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- broke somewhere between bdf48322696290d4e3d00ed12b7c7fe6ca213478 (#2810) and 17b13b161b3ddcd691ea7ed90165cfab6dec3950
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* Removing the nobuild, nolink, and alldeps dependency types in favor of being explicit.
* This will help with maintenance going forward, as adding more dependency types won't affect existing declared dependencies in weird ways.
* default deptype is still `('build', 'link')`
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* GitLab: Tarball Version Test
Upload a test demonstrating #2290
* Add GitLab parsing
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Don't override MODULEPATH with PATH, PATH has no modulefiles
PEP8 compliance
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* Rename packages
* Upcasing depends_on() in packages.
* Downcased extends('r')
* Fixed erroneously changed URL that had slipped through.
* Fixed typo
* Fixed link from documentation into package source code.
* Fixed another doc problem.
* Changed underscores to dashes in package names.
* Added test to enforce lowercase, no-underscore naming convention.
* Fix r-xgboost
* Downcase more instances of 'R' in package auto-creation.
* Fix test.
* Converted unit test packages to use dashes not underscores
* Downcase `r` in the docs.
* Update module_file_support.rst
Fix r->R for class R.
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* Fix issues when a package provides the same vdep twice.
- provides() now adds to a set of provided vdeps instead of a single one.
* flake8
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* Consolidate packages.yaml code to preferred_packages
* Add validation check and a test for packages.py parsing.
* flake8
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Concretization preserves deptypes
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- Remove stale reference to `import nose` from `bin/spack` script.
- Add `py` to externals (missing dependency for `pytest`)
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* Porting: substitute nose with ytest
This huge commit substitutes nose with pytest as a testing system. Things done here:
* deleted external/nose as it is no longer used
* moved mock resources in their own directory 'test/mock/'
* ported two tests (cmd/find, build_system) to pytest native syntax as an example
* build_environment, log: used monkeypatch instead of try/catch
* moved global mocking of fetch_cache to an auto-used fixture
* moved global mocking from test/__init__.py to conftest.py
* made `spack test` a wrapper around pytest
* run-unit-tests: avoid running python 2.6 tests under coverage to speed them up
* use `pytest --cov` instead of coverage run to cut down testing time
* mock/packages_test: moved mock yaml configuration to files instead of leaving it in the code as string literals
* concretize.py: ported tests to native pytest, reverted multiprocessing in pytest.ini as it was creating the wrong report for coveralls
* conftest.py, fixtures: added docstrings
* concretize_preferences.py: uses fixtures instead of subclassing MockPackagesTest
* directory_layout.py: uses fixtures instead of subclassing MockPackagesTest
* install.py: uses fixtures instead of subclassing MockPackagesTest
* optional_deps.py: uses fixtures instead of subclassing MockPackagesTest
optional_deps.py: uses fixtures instead of subclassing MockPackagesTest
* packages.py: uses fixtures instead of subclassing MockPackagesTest
* provider_index.py: uses fixtures instead of subclassing MockPackagesTest
* spec_yaml.py: uses fixtures instead of subclassing MockPackagesTest
* multimethod.py: uses fixtures instead of subclassing MockPackagesTest
* install.py: now uses mock_archive_url
* git_fetch.py: uses fixtures instead of subclassing MockPackagesTest
* hg_fetch.py: uses fixtures instead of subclassing MockPackagesTest
* svn_fetch.py, mirror.py: uses fixtures instead of subclassing MockPackagesTest
repo.py: deleted
* test_compiler_cmd.py: uses fixtures instead of subclassing MockPackagesTest
* cmd/module.py, cmd/uninstall.py: uses fixtures instead of subclassing MockDatabase
* database.py: uses fixtures instead of subclassing MockDatabase, removed mock/database
* pytest: uncluttering fixture implementations
* database: changing the scope to 'module'
* config.py: uses fixtures instead of subclassing MockPackagesTest
* spec_dag.py, spec_semantics.py: uses fixtures instead of subclassing MockPackagesTest
* stage.py: uses fixtures instead of subclassing MockPackagesTest. Removed mock directory
* pytest: added docstrings to all the fixtures
* pytest: final cleanup
* build_system_guess.py: fixed naming and docstrings as suggested by @scheibelp
* spec_syntax.py: added expected failure on parsing multiple specs closes #1976
* Add pytest and pytest-cov to Spack externals.
* Make `spack flake8` ignore externals.
* run-unit-tests runs spack test and not pytest.
* Remove all the special stuff for `spack test`
- Remove `conftest.py` magic and all the special case stuff in `bin/spack`
- Spack commands can optionally take unknown arguments, if they want to
handle them.
- `spack test` is now a command like the others.
- `spack test` now just delegates its arguments to `pytest`, but it does
it by receiving unknown arguments and NOT taking an explicit
help argument.
* Fix error in fixtures.
* Improve `spack test` command a bit.
- Now supports an approximation of the old simple interface
- Also supports full pytest options if you want them.
* Use external coverage instead of pytest-cov
* Make coverage use parallel-mode.
* change __init__.py docs to include pytest
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* Allow exclusion of packages from `spack module loads`
* Comment out excluded packages instead of not showing them at all.
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* inheritance of directives: using meta-classes to inject attributes coming from directives into packages + lazy directives
* _dep_types -> dependency_types
* using a meta-class to inject directives into packages
* directives are lazy
fixes #2466
* directives.py: allows for multiple inheritance. Added blank lines as suggested by @tgamblin
* directives.py: added a test for simple inheritance of directives
* Minor improvement requested by @tgamblin
CMakePackage: importing names from spack.directives
directives: wrap __new__ to respect pep8
* Refactoring requested by @tgamblin
directives: removed global variables in favor of class variables. Simplified the interface for directives (they return a callable on a package or a list of them).
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* Ensure that every package has a license
Also fixes URLs with http://http:// doubled.
This is a continuation of #2656.
* Add license to every file in Spack
* Make sure Todd is the author of all packages
* Fix flake8 tests
* Don't license external Sphinx docs
* Don't display licenses in tutorial example packages
Also fixes typos and converts command-line examples
from tcsh to bash, which is more common
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That's because in set_build_environment_variables()
the funciton filter_system_paths() is actually applied to
package prefixes, and not to prefix/lib or prefix/include.
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- `-t` | `--types` argument now shows deptypes in `spack spec`
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* Remove usernames from paths in docs
* Fix path export
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The primary goal of #2292 was to use the frontend compiler to make
build dependencies like cmake on HPC platforms. It turns out that
while this works in some cases, it did not handle cases where a
package was a link dependency of the root and of a build dependency
(and could produce incorrect concretizations which would not build).
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* Better output for disambiguate_specs()
* Fix wrong exception name.
* Fix satsifies(): concrete specs require matching by hash.
- Fixes uninstall by hash and other places where we need to match a
specific spec.
- Fix an error in provider_index (satisfies() call was backwards)
- Fix an error in satisfies_dependencies(): checks were too shallow.
* Fix default args in Spec.tree()
* Move installed_dependents() to DB to avoid unknown package error.
* Make `spack find` and `sapck.store.db.query()` faster for hashes.
* Add a test to ensure satisfies() respects concrete Specs' hashes.
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AutotoolsPackage (#2464)
* Customization for make targets in build and test phases for AutotoolsPackage
* Updated Blitz++ to use customized make build and test targets
* Removed flake8 error
* Removed make test customization, added make install customization, need to figure out issues with multiple make targets
* Changed build_targets and install_targets to normal attributes
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* MakefilePackage: changed build_args and install_args for consistency with #2464
openblas: derives from MakefilePackage
* MakefilePackage: changed default edit behavior
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Changes any to a string to avoid <built-in function any> being
incorrectly added to target in compilers.yaml.
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Fixes issue #2578
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* Better cxx11/14 flags for GNU/Clang/Intel
- GCC 4.8 only supports -std=c++1y for C++14
- Use CMake's rules for AppleClang to set cxx11 and cxx14 flags based on
Apple Xcode/LLVM version
- Use CMake's rules for Intel to add support for cxx14 flags based on
Intel version.
* Add cxx17_flag property
Implement property in compiler for c++17 as per those for c++11/14.
Add concrete support for GNU/Clang:
- Return -std=c++1z for GCC 5 and above per GCC documentation
- Return -std=c++1z for Clang 3.5 and above per Clang documentation
- Return -std=c++1z for Apple LLVM 6.1 and above per CMake's rules
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refactoring (#2317)
* Update `spack setup` and `spack graph` to be consistent with c557e765 and 9347f869. Fixes #2316.
* Added another "fix" necessary to make `spack setup` work.
* Added another "fix" necessary to make `spack setup` work. (reverted from commit 7f0d3ecb38c97ec00491d7cd66b4266e3018b1ca)
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* Add freetype dependency on bzip2
* Switch package with an install method for the docs
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* Add documentation for repositories and namespaces.
* Update and extend repository documentation per review.
- Also add `-N` argument for `spack spec`
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The advanced [Uninstalling Packages](spack.readthedocs.io/en/latest/tutorial_sc16_spack_basics.html#uninstalling-packages) via hash has a couple missing `.. code-block:: console` directives ;)
I have no idea what branch to direct this to though...
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* clang: do xcode mockup iff requested by a package
* add a note
* add pkg to setup_custom_environment() and decide whether or not to use mockup XCode there based on the package
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* Make targets an attribute of compilers, similar to OS. Allows users to use `spack compiler find` to add compilers for the same platform/os but different targets when spack is installed on a file system mounted on machines with different targets.
* Changed get_compilers() method to treat old compilers with no target as target='any'
* flake8 changes
* Address change requests for comments/code clarity
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* Add support for parsing R-XML URL versions.
* Better url-parse debug output.
- just print the debug stuff all the time.
* fix R-XML versions.
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* fix for bluegene-q platform
* change powerpc to ppc64
* change CNK to cnk
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Fixes #2306
Any dependency explicitly mentioned in a spec string ended up with the
build and link deptypes unconditionally. This fixes dependency
resolution to ensure that packages which are mentioned in the spec
string have their deptypes determined by the dependency information
in the package.py files. For example if a package has cmake as a build
dependency, and cmake is mentioned as a dependency in the spec string
for the package, then it ends up with just the build deptype.
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Packages built targeting a backend may depend on packages like cmake
which can be built against the frontend. With this commit, any build
dependency or child of a build dependency will target the frontend by
default. In compiler concretization when packages copy compilers from
nearby packages, build dependencies use compiler information from
other build dependencies, and link dependencies avoid using compiler
information from build dependencies.
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