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2024-11-06Fix `spack -c <override>` when env active (#47403)Massimiliano Culpo3-45/+40
Set command line scopes last in _main, so they are higher scopes Restore the global configuration in a spawned process by inspecting the result of ctx.get_start_method() Add the ability to pass a mp.context to PackageInstallContext. Add shell-tests to check overriding the configuration: - Using both -c and -C from command line - With and without an environment active
2024-11-06Fix various bootstrap/concretizer import issues (#47467)Harmen Stoppels4-9/+10
2024-11-06llnl.util.filesystem.find: restore old error handling (#47463)Harmen Stoppels1-20/+11
2024-11-06Feature: Allow variants to propagate if not available in source pkg (#42931)Richarda Butler7-35/+332
Variants can now be propagated from a dependent package to (transitive) dependencies, even if the source or transitive dependencies have the propagated variants. For example, here `zlib` doesn't have a `guile` variant, but `gmake` does: ``` $ spack spec zlib++guile - zlib@1.3%gcc@12.2.0+optimize+pic+shared build_system=makefile arch=linux-rhel8-broadwell - ^gcc-runtime@12.2.0%gcc@12.2.0 build_system=generic arch=linux-rhel8-broadwell - ^gmake@4.4.1%gcc@12.2.0+guile build_system=generic arch=linux-rhel8-broadwell ``` Adding this property has some strange ramifications for `satisfies()`. In particular: * The abstract specs `pkg++variant` and `pkg+variant` do not intersect, because `+variant` implies that `pkg` *has* the variant, but `++variant` does not. * This means that `spec.satisfies("++foo")` is `True` if: * for concrete specs: `spec` and its dependencies all have `foo` set if it exists * for abstract specs: no dependency of `spec` has `~foo` (i.e. no dependency contradicts `++foo`). * This also means that `Spec("++foo").satisfies("+foo")` is `False` -- we only know after concretization. The `satisfies()` semantics may be surprising, but this is the cost of introducing non-subset semantics (which are more useful than proper subsets here). - [x] Change checks for variants - [x] Resolve conflicts - [x] Add tests - [x] Add documentation --------- Co-authored-by: Gregory Becker <becker33@llnl.gov> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-11-05libc.py: detect glibc also in chinese locale (#47434)Harmen Stoppels1-6/+18
2024-11-05Revert "Ci generate on change (#47318)" (#47431)Harmen Stoppels2-109/+27
This reverts commit 1462c357619fedf7354bc60f9178b2199258ebd2.
2024-11-05spack.concretize: add type-hints, remove kwargs (#47382)Massimiliano Culpo5-124/+52
Also remove find_spec, which was used by the old concretizer. Currently, it seems to be used only in tests.
2024-11-04filesystem.py: add `max_depth` argument to `find` (#41945)Peter Scheibel3-75/+290
* `find(..., max_depth=...)` can be used to control how many directories at most to descend into below the starting point * `find` now enters every unique (symlinked) directory once at the lowest depth * `find` is now repeatable: it traverses the directory tree in a deterministic order
2024-11-04cc: parse RPATHs when in `ld` modeTodd Gamblin2-21/+85
In the pure `ld` case, we weren't actually parsing `RPATH` arguments separately as we do for `ccld`. Fix this by adding *another* nested case statement for raw `RPATH` parsing. There are now 3 places where we deal with `-rpath` and friends, but I don't see a great way to unify them, as `-Wl,`, `-Xlinker`, and raw `-rpath` arguments are all ever so slightly different. Also, this Fixes ordering of assertions to make `pytest` diffs more intelligible. The meaning of `+` and `-` in diffs changed in `pytest` 6.0 and the "preferred" order for assertions became `assert actual == expected` instead of the other way around. Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-04`cc`: simplify ordered list handlingTodd Gamblin1-114/+65
`cc` divides most paths up into system paths, spack managed paths, and other paths. This gets really repetitive and makes the code hard to read. Simplify the script by adding some functions to do most of the redundant work for us. Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-04Times spec building and timing to public concretizer API (#47310)John Gouwar1-4/+15
This PR has two small contributions: - It adds another phase to the timer for concrectization, "construct_specs", to actually see the time the concretizer spends interpreting the `clingo` output to build the Python object for a concretized spec. - It adds the method `Solver.solve_with_stats` to expose the timers that were already in the concretizer to the public solver API. `Solver.solve` just becomes a special case of `Solver.solve_with_stats` that throws away the timing output (which is what it was already doing). These changes will make it easier to benchmark concretizer performance and provide a more complete picture of the time spent in the concretizer by including the time spent interpreting clingo output.
2024-11-04packaging_guide.rst: explain forward and backward compat before the less ↵Harmen Stoppels1-28/+63
common cases (#47402) The idea is to go from most to least used: backward compat -> forward compat -> pinning on major or major.minor version -> pinning specific, concrete versions. Further, the following ```python # backward compatibility with Python depends_on("python@3.8:") depends_on("python@3.9:", when="@1.2:") depends_on("python@3.10:", when="@1.4:") # forward compatibility with Python depends_on("python@:3.12", when="@:1.10") depends_on("python@:3.13", when="@:1.12") depends_on("python@:3.14") ``` is better than disjoint when ranges causing repetition of the rules on dependencies, and requiring frequent editing of existing lines after new releases are done: ```python depends_on("python@3.8:3.12", when="@:1.1") depends_on("python@3.9:3.12", when="@1.2:1.3") depends_on("python@3.10:3.12", when="@1.4:1.10") depends_on("python@3.10:3.13", when="@1.11:1.12") depends_on("python@3.10:3.14", when="@1.13:")
2024-11-03Specs: propagated variants affect `==` equality (#47376)Massimiliano Culpo3-15/+42
This PR changes the semantic of == for spec so that: hdf5++mpi == hdf5+mpi won't hold true anymore. It also changes the constrain semantic, so that a non-propagating variant always override a propagating variant. This means: (hdf5++mpi).constrain(hdf5+mpi) -> hdf5+mpi Before we had a very weird semantic, that was supposed to be tested by unit-tests: (libelf++debug).constrain(libelf+debug+foo) -> libelf++debug++foo This semantic has been dropped, as it was never really tested due to the == bug.
2024-11-02Remove ignored config:install_missing_compilers from unit tests (#47357)Tamara Dahlgren1-18/+16
2024-11-02Rework the schema for reusing environments (#47364)Massimiliano Culpo3-22/+13
Currently, the schema reads: from: - type: environment: path_or_name but this can't be extended easily to other types, e.g. to buildcaches, without duplicating the extension keys. Use instead: from: - type: environment path: path_or_name
2024-11-01build(deps): bump python-levenshtein in /lib/spack/docs (#47372)dependabot[bot]1-1/+1
Bumps [python-levenshtein](https://github.com/rapidfuzz/python-Levenshtein) from 0.26.0 to 0.26.1. - [Release notes](https://github.com/rapidfuzz/python-Levenshtein/releases) - [Changelog](https://github.com/rapidfuzz/python-Levenshtein/blob/main/HISTORY.md) - [Commits](https://github.com/rapidfuzz/python-Levenshtein/compare/v0.26.0...v0.26.1) --- updated-dependencies: - dependency-name: python-levenshtein dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-11-01parse_specs: unify specs based on concretizer:unify (#44843)Greg Becker9-125/+237
Currently, the `concretizer:unify:` config option only affects environments. With this PR, it now affects any group of specs given to a command using the `parse_specs(*, concretize=True)` interface. - [x] implementation in `parse_specs` - [x] tests - [x] ensure all commands that accept multiple specs and concretize use `parse_specs` interface --------- Co-authored-by: Todd Gamblin <tgamblin@llnl.gov> Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-01Ci generate on change (#47318)kwryankrattiger2-27/+109
* don't concretize in CI if changed packages are not in stacks Signed-off-by: Todd Gamblin <tgamblin@llnl.gov> * Generate noop job when no specs to rebuild due to untouched pruning * Add test to verify skipping generate creates a noop job * Changed debug for early exit --------- Signed-off-by: Todd Gamblin <tgamblin@llnl.gov> Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-11-01Fix pickle round-trip of specs propagating variants (#47351)Massimiliano Culpo3-14/+50
This changes `Spec` serialization to include information about propagation for abstract specs. This was previously not included in the JSON representation for abstract specs, and couldn't be stored. Now, there is a separate `propagate` dictionary alongside the `parameters` dictionary. This isn't beautiful, but when we bump the spec version for Spack `v0.24`, we can clean up this and other aspects of the schema.
2024-11-01build(deps): bump docutils from 0.20.1 to 0.21.2 in /lib/spack/docs (#45592)dependabot[bot]1-1/+1
Bumps [docutils](https://docutils.sourceforge.io) from 0.20.1 to 0.21.2. --- updated-dependencies: - dependency-name: docutils dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-10-31database.py: remove process unsafe update_explicit (#47358)Harmen Stoppels3-24/+7
Fixes an issue reported where `spack env depfile` + `make -j` would non-deterministically refuse to mark all environment roots explicit. `update_explicit` had the pattern ```python rec = self._data[key] with self.write_transaction(): rec.explicit = explicit ``` but `write_transaction` may reinitialize `self._data`, meaning that mutating `rec` won't mutate `self._data`, and the changes won't be persisted. Instead, use `mark` which has a correct implementation. Also avoids the essentially incorrect early return in `update_explicit` which is a pattern I don't think belongs in database.py: it branches on possibly stale data to realize there is nothing to change, but in reality it requires a write transaction to know that for a fact, but that would defeat the purpose. So, leave this optimization to the call site.
2024-10-31Concretize reuse: reuse specs from environment (#45139)kwryankrattiger7-13/+279
The already concrete specs in an environment are now among the reusable specs for the concretizer. This includes concrete specs from all include_concrete environments. In addition to this change to the default reuse, `environment` is added as a reuse type for the concretizer config. This allows users to specify: spack: concretizer: # Reuse from this environment (including included concrete) but not elsewhere reuse: from: - type: environment # or reuse from only my_env included environment reuse: from: - type: environment: my_env # or reuse from everywhere reuse: true If reuse is specified from a specific environment, only specs from that environment will be reused. If the reused environment is not specified via include_concrete, the concrete specs will be retried at concretization time to be reused. Signed-off-by: Ryan Krattiger <ryan.krattiger@kitware.com> Co-authored-by: Gregory Becker <becker33@llnl.gov>
2024-10-31Docs: remove reference to pyspack (#47346)Adam J. Stewart1-4/+0
2024-10-30hooks: run in clear, fixed order (#47329)Harmen Stoppels2-32/+25
Currently the order in which hooks are run is arbitrary. This can be fixed by sorted(list_modules(...)) but I think it is much more clear to just have a static list. Hooks are not extensible other than modifying Spack code, which means it's unlikely people maintain custom hooks since they'd have to fork Spack. And if they fork Spack, they might as well add an entry to the list when they're continuously rebasing.
2024-10-30types: remove singleton union in globals (#47282)Harmen Stoppels4-29/+14
2024-10-30add std_pip_args global to the audit list (#47320)Harmen Stoppels1-1/+1
2024-10-30Spec.__str__: use full hash (#47322)Harmen Stoppels1-1/+1
The idea is that `spack -e env add ./concrete-spec.json` would list the full hash in the specs, so that (a) it's not ambiguous and (b) it could in principle results in constant time lookup instead of linear time substring match in large build caches.
2024-10-30Spec.dependencies: allow to filter on virtuals (#47284)Massimiliano Culpo3-49/+96
Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2024-10-30Fix malformed RST link in documentation (#47309)Alex Hedges1-1/+1
2024-10-29llnl.util.lang: add classes to help with deprecations (#47279)Massimiliano Culpo2-0/+92
* Add a descriptor to have a class level constant This descriptor helps intercept places where we set a value on instances. It does not really behave like "const" in C-like languages, but is the simplest implementation that might still be useful. * Add a descriptor to deprecate properties/attributes of an object This descriptor is used as a base class. Derived classes may implement a factory to return an adaptor to the attribute being deprecated. The descriptor can either warn, or raise an error, when usage of the deprecated attribute is intercepted. --------- Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2024-10-29bootstrap: do not consider source when metadata file missing (#47278)Harmen Stoppels1-3/+6
2024-10-29std_meson_args: deprecate (#47259)Harmen Stoppels1-1/+1
2024-10-29builder.py: builder_cls should be associated to spack.pkg module (#47269)Harmen Stoppels2-5/+14
2024-10-29directives_meta.py: use startswith to test module part of spack.pkg (#47270)Harmen Stoppels1-1/+2
2024-10-28cmd/solve: use interface from cmd/spec (#47182)Greg Becker2-59/+20
Currently, `spack solve` has different spec selection semantics than `spack spec`. `spack solve` currently does not allow specifying a single spec when an environment is active. This PR modifies `spack solve` to inherit the interface from `spack spec`, and to use the same spec selection logic. This will allow for better use of `spack solve --show opt` for debugging. --------- Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-27Remove a few redundant imports (#47250)Harmen Stoppels6-15/+8
* remove self-imports * remove unused imports
2024-10-27explicit splice: do not fail for bad config replacement if target not ↵Greg Becker2-2/+42
matched (#46925) Originally, concretization failed if the splice config points to an invalid replacement. This PR defers the check until we know the splice is needed, so that irrelevant splices with bad config cannot stop concretization. While I was at it, I improved an error message from an assert to a ValueError.
2024-10-26Add `-t` short option for `spack --backtrace` (#47227)Todd Gamblin1-0/+1
Signed-off-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-25Normalize Spack Win entry points (#38648)John W. Parent1-2/+0
* Normalize Spack Win entrypoints Currently Spack has multiple entrypoints on Windows that in addition to differing from *nix implementations, differ from shell to shell on Windows. This is a bit confusing for new users and in general unnecessary. This PR adds a normal setup script for the batch shell while preserving the previous "click from file explorer for spack shell" behavior. Additionally adds a shell title to both powershell and cmd letting users know this is a Spack shell * remove doskeys
2024-10-25Intel/Oneapi compilers: suppress warnings when using Cray wrappers (#47046)Dom Heinzeller2-6/+8
#44588 we added logic to suppress deprecation warnings for the Intel classic compilers. This depended on matching against * The compiler names (looking for icc, icpc, ifort) * The compiler version When using an Intel compiler with fortran wrappers, the first check always fails. To support using the fortran wrappers (in combination with the classic Intel compilers), we remove the first check and suppress if just the version matches. This works because: * The newer compilers like icx can handle (ignore) the flags that suppress deprecation warnings * The Cray wrappers pass the underlying compiler version (e.g. they report what icc would report)
2024-10-25ensure write_fd.close() isn't called when sys.std* cannot be redirectedHarmen Stoppels1-6/+7
2024-10-25Avoid a socket to communicate effectively a bitHarmen Stoppels1-3/+3
2024-10-25Replace MultiProcessFd with Connection objectsHarmen Stoppels2-134/+68
Connection objects are Python version, platform and multiprocessing start method independent, so better to use those than a mix of plain file descriptors and inadequate guesses in the child process whether it was forked or not. This also allows us to delete the now redundant MultiProcessFd class, hopefully making things a bit easier to follow.
2024-10-25file_cache.py: allow read transaction on uninitialized cache (#47212)Harmen Stoppels2-40/+58
This allows the following ```python cache.init_entry("my/cache") with cache.read_transaction("my/cache") as f: data = f.read() if f is not None else None ``` mirroring `write_transaction`, which returns a tuple `(old, new)` where `old` is `None` if the cache file did not exist yet. The alternative that requires less defensive programming on the call site would be to create the "old" file upon first read, but I did not want to think about how to safely atomically create the file, and it's not unthinkable that an empty file is an invalid format (for instance the call site may expect a json file, which requires at least {} bytes).
2024-10-25Add spack short version in config variables (#47016)Jordan Galby4-14/+35
2024-10-24Env help: expand and refine subcommand help and descriptions (#47089)Tamara Dahlgren1-62/+97
This PR is in response to a question in the `environments` slack channel (https://spackpm.slack.com/archives/CMHK7MF51/p1729200068557219) about inadequate CLI help/documentation for one specific subcommand. This PR uses the approach I took for the descriptions and help for `spack test` subcommands. Namely, I use the first line of the relevant docstring as the description, which is shown per subcommand in `spack env -h`, and the entire docstring as the help. I then added, where it seemed appropriate, help. I also tweaked argument docstrings to tighten them up, make consistent with similar arguments elsewhere in the command, and elaborate when it seemed important. (The only subcommand I didn't touch is `loads`.) For example, before: ``` $ spack env update -h usage: spack env update [-hy] env positional arguments: env name or directory of the environment to activate optional arguments: -h, --help show this help message and exit -y, --yes-to-all assume "yes" is the answer to every confirmation request ``` After the changes in this PR: ``` $ spack env update -h usage: spack env update [-hy] env update the environment manifest to the latest schema format update the environment to the latest schema format, which may not be readable by older versions of spack a backup copy of the manifest is retained in case there is a need to revert this operation positional arguments: env name or directory of the environment optional arguments: -h, --help show this help message and exit -y, --yes-to-all assume "yes" is the answer to every confirmation request ``` --------- Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-24compilers.yaml: require list of strings for modules (#47197)Harmen Stoppels2-2/+5
2024-10-24Restore bold uncolored font face (#47108)Kyle Knoepfel1-1/+3
Commit aa0825d642cfa285f5f62761a0e23dc1e511d056 accidentally added a semicolon to the ANSI escape sequence even if the color code was `None` or unknown, breaking the bold, uncolored font-face. This PR restores the old behavior. --------- Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
2024-10-24bootstrap: add clingo 3.13 binaries and more (#47126)Harmen Stoppels3-8/+4
2024-10-24Improve `Database.query*` methods (#47116)Massimiliano Culpo8-128/+181
* Add type hints to all query* methods * Inline docstrings * Change defaults from `any` to `None` so they can be type hinted in old Python * Pre-filter on given hashes instead of iterating over all db specs * Fix a bug where the `--origin` option of uninstall had no effect * Fix a bug where query args were not applied when searching by concrete spec Signed-off-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>