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2023-08-10build(deps): bump flake8 from 6.0.0 to 6.1.0 in /lib/spack/docs (#39366)dependabot[bot]1-1/+1
Bumps [flake8](https://github.com/pycqa/flake8) from 6.0.0 to 6.1.0. - [Commits](https://github.com/pycqa/flake8/compare/6.0.0...6.1.0) --- updated-dependencies: - dependency-name: flake8 dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-10build(deps): bump sphinx-design from 0.4.1 to 0.5.0 in /lib/spack/docs (#39367)dependabot[bot]1-1/+1
Bumps [sphinx-design](https://github.com/executablebooks/sphinx-design) from 0.4.1 to 0.5.0. - [Release notes](https://github.com/executablebooks/sphinx-design/releases) - [Changelog](https://github.com/executablebooks/sphinx-design/blob/main/CHANGELOG.md) - [Commits](https://github.com/executablebooks/sphinx-design/compare/v0.4.1...v0.5.0) --- updated-dependencies: - dependency-name: sphinx-design dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-10Prefix conflict messages with package name (#39106)Aiden Grossman2-4/+6
* Prefix conflict messages with package name This patch prefixes all conflict messages with the package name to alleviate what was otherwise a very manual process. Note that this patch is a one line change but has a fairly outsized impact. * same for requires directive --------- Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-10Fixed broken calls to _if_ninja_target_execute (#38992)Ricard Zarco Badia1-2/+2
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-08-10Revert "Spec versions: allow `git.` references for branches with `/` ↵Harmen Stoppels3-36/+3
(#38239)" (#39354) This reverts commit 3453259c98c7d39655b8495ca2e3677c51284b43.
2023-08-10build(deps): bump urllib3 from 2.0.3 to 2.0.4 in /lib/spack/docs (#39002)dependabot[bot]1-1/+1
Bumps [urllib3](https://github.com/urllib3/urllib3) from 2.0.3 to 2.0.4. - [Release notes](https://github.com/urllib3/urllib3/releases) - [Changelog](https://github.com/urllib3/urllib3/blob/main/CHANGES.rst) - [Commits](https://github.com/urllib3/urllib3/compare/2.0.3...2.0.4) --- updated-dependencies: - dependency-name: urllib3 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-09Windows: enable more stage tests (#36834)markus-ferrell1-8/+9
Enable some already-supported tests (no changes to staging logic).
2023-08-09add info about devito and qe for intel env (#39357)Andrey Parfenov1-0/+2
Signed-off-by: Andrey Parfenov <andrey.parfenov@intel.com>
2023-08-09Fix package.py error handling bug (#39017)Jordan Galby1-3/+2
2023-08-09build(deps): bump black from 23.1.0 to 23.7.0 in /lib/spack/docs (#38982)dependabot[bot]1-1/+1
Bumps [black](https://github.com/psf/black) from 23.1.0 to 23.7.0. - [Release notes](https://github.com/psf/black/releases) - [Changelog](https://github.com/psf/black/blob/main/CHANGES.md) - [Commits](https://github.com/psf/black/compare/23.1.0...23.7.0) --- updated-dependencies: - dependency-name: black dependency-type: direct:production update-type: version-update:semver-minor ... Signed-off-by: dependabot[bot] <support@github.com> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-08-09package import: remove magic import line (#39183)Harmen Stoppels5-43/+46
2023-08-09Fix suffix of tab completion scripts (#39154)Adam J. Stewart2-4/+5
2023-08-09zlib-api: new virtual with zlib/zlib-ng as providers (#37372)Harmen Stoppels2-2/+2
Introduces a new virtual zlib-api, which replaces zlib in most packages. This allows users to switch to zlib-ng by default for better performance.
2023-08-09containerize: ensure bootstrap images contain all system dependencies (#36818)Jonathon Anderson2-2/+9
This also makes `spack bootstrap status` exit 1 if some dependency is missing
2023-08-09Spec versions: allow `git.` references for branches with `/` (#38239)Peter Scheibel3-3/+36
2023-08-09Push conflict between rocm and blt down to packages that actually use blt ↵Massimiliano Culpo1-2/+0
(#39339)
2023-08-08Ensure that all variants have a description (#39025)Adam J. Stewart2-30/+41
* Ensure that all variants have a description * Update mock packages too * Fix test invocations * Black fix * mgard: update variant descriptions * flake8 fix * black fix * Add to audit tests * Relax type hints * Older Python support * Undo all changes to mock packages * Flake8 fix
2023-08-08Name clash error message include hash of clashing packages (#39234)simonLeary421-1/+2
Co-authored-by: Simon <simonleary@umass.edu>
2023-08-08Fix broken inode assertion (#39188)Harmen Stoppels1-1/+1
2023-08-07use {%compiler.name}{@compiler.version} in matching_specs (#39247)Harmen Stoppels1-1/+1
2023-08-07Extract prefix locks and failure markers from Database (#39024)Massimiliano Culpo12-383/+357
This PR extracts two responsibilities from the `Database` class: 1. Managing locks for prefixes during an installation 2. Marking installation failures and pushes them into their own class (`SpecLocker` and `FailureMarker`). These responsibilities are also pushed up into the `Store`, leaving to `Database` only the duty to manage `index.json` files. `SpecLocker` classes no longer share a global list of locks, but locks are per instance. Their identifier is simply `(dag hash, package name)`, and not the spec prefix path, to avoid circular dependencies across Store / Database / Spec.
2023-08-07Picklable HTTPError (#39285)Harmen Stoppels2-2/+36
2023-08-05Add a more detailed HTTPError (#39187)Harmen Stoppels1-3/+26
2023-08-04py-pyqt6: add new package (#32696)Adam J. Stewart2-61/+35
2023-08-03repo cache: use -inf default instead of 0 (#39214)Harmen Stoppels2-28/+24
FastPackageChecker.modified_since should use a default number < 0 When the repo cache does not exist, Spack uses mtime 0. This causes the repo cache not to be generated when the repo has mtime 0. Some popular package managers such as spack use 0 mtime normalization for reproducible tarballs. So when installing spack with spack from a buildcache, the repo cache doesn't generate Also add some typehints
2023-08-03Buildcache commands cleanup, again... (#39203)Harmen Stoppels6-158/+114
* Inform mypy that tty.die is noreturn * avoid temporary allocation in env * update spack buildcache save-specfile * fix spack buildcache check/download/get-buildcache-name - ensure that required args and mutually exclusive ones are marked as such in argparse for better error messages - deprecate --spec-file everywhere - use disambiguate for better error messages
2023-08-02Add qmake virtual provider (#38848)Adam J. Stewart1-1/+1
2023-08-02CI: Refactor ci reproducer (#37088)kwryankrattiger3-93/+184
* CI: Refactor ci reproducer * Autostart container * Reproducer paths match CI paths * Generate start scripts for docker and reproducer * CI: Add interactive and gpg options to reproduce-build * Interactive will determine if the docker container persists after running reproduction. * GPG path/url allow downloading GPG keys needed for binary cache download validation. This is important for running reproducer for protected CI jobs. * Add exit_on_failure option to CI scripts * CI: Add runtime option for reproducer
2023-08-02version: move to module, avoid circular imports (#39077)Harmen Stoppels8-268/+358
2023-08-02buildcache extractall: extract directly into spec.prefix (#37441)Harmen Stoppels5-60/+159
- Run `mkdirp` on `spec.prefix` - Extract directly into `spec.prefix` 1. No need for `$store/tmp.xxx` where we extract the tarball directly, pray that it has one subdir `<name>-<version>-<hash>`, and then `rm -rf` the package prefix followed by `mv`. 2. No need to clean up this temp dir in `spack clean`. 3. Instead figure out package directory prefix from the tarball contents, and strip the tarinfo entries accordingly (kinda like tar --strip-components but more strict) - Set package dir permissions - Don't error during error handling when files cannot removed - No need to "enrich" spec.json with this tarball-toplevel-path After this PR, we can in fact tarball packages relative to `/` instead of `spec.prefix/..`, which makes it possible to use Spack tarballs as container layers, where relocation is impossible, and rootfs tarballs are expected.
2023-08-02feat: move -N/--namespace(s) to common args, allow in `buildcache list` (#36719)Wouter Deconinck7-31/+25
`spack buildcache list` did not have a way to display the namespace of packages in the buildcache. This PR adds that functionality. For consistency's sake, it moves the `-N/--namespace` arg definition to the `common/arguments.py` and modifies `find`, `solve`, `spec` to use the common definition. Previously, `find` was using `--namespace` (singular) to control whether to display the namespace (it doesn't restrict the search to that namespace). The other commands were using `--namespaces` (plural). For backwards compatibility and for consistency with `--deps`, `--tags`, etc, the plural `--namespaces` was chosen. The argument parser ensures that `find --namespace` will continue to behave as before. Co-authored-by: Harmen Stoppels <me@harmenstoppels.nl>
2023-08-01remove CMAKE_GENERATOR from the host-config because it cannot be overwritten ↵Chris White1-11/+0
on the command line (#39044)
2023-07-31Add `spack checksum --verify`, fix `--add` (#38458)Alec Scott6-113/+266
* Add rewrite of spack checksum to include --verify and better add versions to package.py files * Fix formatting and remove unused import * Update checksum unit-tests to correctly test multiple versions and add to package * Remove references to latest in stage.py * Update bash-completion scripts to fix unit tests failures * Fix docs generation * Remove unused url_dict argument from methods * Reduce chance of redundant remote_versions work * Add print() before tty.die() to increase error readablity * Update version regular expression to allow for multi-line versions * Add a few unit tests to improve test coverage * Update command completion * Add type hints to added functions and fix a few py-lint suggestions * Add @no_type_check to prevent mypy from failing on pkg.versions * Add type hints to format.py and fix unit test * Black format lib/spack/spack/package_base.py * Attempt ignoring type errors * Add optional dict type hint and declare versions in PackageBase * Refactor util/format.py to allow for url_dict as an optional parameter * Directly reference PackageBase class instead of using TypeVar * Fix comment typo --------- Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
2023-07-31Remove Xcode mock-up (#39020)Adam J. Stewart3-227/+0
* Remove Xcode mock-up * Remove unused imports
2023-07-26ci: Make signing requirement explicit (#38995)Scott Wittenburg4-9/+50
Instead of inferring whether to sign binaries, make it explicit, and fail rebuild jobs early if signing is required but cannot be accomplished.
2023-07-24Always set workflow:rules in spack ci pipelines (#38921)Jonathon Anderson2-13/+20
2023-07-24Fix typo: binary_caches.rst (#39064)Ashwin Kumar Karnad1-1/+1
2023-07-24Don't add `.spack/binary_distribution` twice to the tarball when ↵Harmen Stoppels2-2/+44
re-distributing (#39042) Previously, spack would list the ./spack/binary_distribution file twice when pushing a package that was installed from a binary tarball itself.
2023-07-24Fix broken `sanitize_file_path` (#38926)Harmen Stoppels6-35/+52
The sanitization function is completely bogus as it tries to replace / on unix after ... splitting on it. The way it's implemented is very questionable: the input is a file name, not a path. It doesn't make sense to interpret the input as a path and then make the components valid -- you'll interpret / in a filename as a dir separator. It also fails to deal with path components that contain just unsupported characters (resulting in empty component). The correct way to deal with this is to have a function that takes a potential file name and replaces unsupported characters. I'm not going to fix the other issues on Windows, such as reserved file names, but left a note, and hope that @johnwparent can fix that separately. (Obviously we wouldn't have this problem at all if we just fixed the filename in a safe way instead of trying to derive something from the url; we could use the content digest when available for example)
2023-07-22Implement fish completion (#29549)百地 希留耶5-165/+563
* commands: provide more information to Command * fish: Add script to generate fish completion * fish: auto prepend `spack` command to avoid duplication * fish: impove completion generation code readability * commands: replace match-case with if-else * fish: fix optspec variable name prefix * fish: fix return value in get_optspecs * fish: fix return value in get_optspecs * format: split long line and trim trailing space * bugfix: replace f-string with interpolation * fish: compete more specs and some fixes * fish: complete hash spec starts with / * fish: improve compatibility * style: trim trailing whitespace * commands: add fish to update args and update tests * commands: add fish completion file * style: merge imports * fish: source completion in setup-env * fish: caret only completes dependencies * fish: make sure we always get same order of output * fish: spack activate only show installed packages that have extensions * fish: update completion file * fish: make dict keys sorted * Blacken code * Fix bad merge * Undo style changes to setup-env.fish * Fix unit tests * Style fix * Compatible with fish_indent * Use list for stability of order * Sort one more place * Sort more things * Sorting unneeded * Unsort * Print difference * Style fix * Help messages need quotes * Arguments to -a must be quoted * Update types * Update types * Update types * Add type hints * Change order of positionals * Always expand help * Remove shared base class * Fix type hints * Remove platform-specific choices * First line of help only * Remove unused maps * Remove suppress * Remove debugging comments * Better quoting * Fish completions have no double dash * Remove test for deleted class * Fix grammar in header file * Use single quotes in most places * Better support for remainder nargs * No magic strings * * and + can also complete multiple * lower case, no period --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-21Remove spack.repo.IndexError (#39029)Massimiliano Culpo1-4/+0
This exception is never used and overrides a built-in.
2023-07-21binary_caches.rst: fix typo (#39030)Ashwin Kumar Karnad1-1/+1
2023-07-20nag: update the versioning scheme (#35457)Sergey Kosukhin2-2/+11
* nag: append build number to the version * nag: add version 7.1.7125 * nag: deprecate unavailable versions
2023-07-20spack.util.lock: add type-hints, remove **kwargs in method signatures (#39011)Massimiliano Culpo4-23/+37
2023-07-19Respect custom user store when bootstrapping (#39001)Massimiliano Culpo3-1/+26
The user store is lazily evaluated. The change in #38975 made it such that the first evaluation was happening in the middle of swapping to user configuration. Ensure we construct the user store before that.
2023-07-19modules: use curly braces to enclose value in Tcl modulefile (#38375)Xavier Delaruelle3-33/+65
Use curly braces instead of quotes to enclose value or text in Tcl modulefile. Within curly braces Tcl special characters like [, ] or $ are treated verbatim whereas they are evaluated within quotes. Curly braces is Tcl recommended way to enclose verbatim content [1]. Note: if curly braces charaters are used within content, they must be balanced. This point has been checked against current repository and no unbalanced curly braces has been spotted. Fixes #24243 [1] https://wiki.tcl-lang.org/page/Tcl+Minimal+Escaping+Style
2023-07-19Fetch & patch: actually acquire stage lock, and many more issues (#38903)Harmen Stoppels17-219/+210
* Fetching patches wouldn't result in acquiring a stage lock during install * The installer would acquire a stage lock *after* fetching instead of before, leading to races * The name of the stage for patches was random, so on build failure (where stage dirs are not removed), these directories would continue to exist after a second successful install. * There was this redundant "composite fetch" object -- there's already a composite stage. Remove this. * For some reason we do *double* shasum validation of patches, before and after compression -- that's just too much? I removed it.
2023-07-19drop redundant rpaths post install (#38976)Harmen Stoppels2-0/+152
Spack heuristically adds `<install prefix>/lib` and `<install prefix>/lib64` as rpath entries, as it doesn't know what the install dir is going to be ahead of the build. This PR cleans up non-existing, absolute paths[^1], which 1. avoids redundant stat calls at runtime 2. drops redundant rpaths in `patchelf`, making it relocatable -- you don't need patchelf recursively then. [^1]: It also removes relative paths not starting with `$` (so, `$ORIGIN/../lib` is retained -- we _could_ interpolate `$ORIGIN`, but that's hard to get right when symlinks have to be taken into account). Relative paths _are_ supported in glibc, but are relative to _the current working directory_, which is madness, and it would be better to drop those paths.
2023-07-19llnl.util.lock: add type-hints (#38977)Massimiliano Culpo3-71/+114
Also uppercase global variables in the module
2023-07-19Remove `LazyReference` from code (#38944)Massimiliano Culpo72-425/+376
A LazyReference object is a reference to an attribute of a lazily evaluated singleton. Its only purpose is to let developers use shorter names to refer to such attribute. This class does more harm than good, as it obfuscates the fact that we are using the attribute of a global object. Also, it can easily go out of sync with the singleton it refers to if, for instance, the singleton is updated but the references are not. This commit removes the LazyReference class entirely, and access the attributes explicitly passing through the global value to which they are attached.