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2021-12-23Fix execution of style testsv0.17.1Massimiliano Culpo1-0/+2
2021-12-23Add setdefault option to tcl module (#14686)victorusu1-1/+10
This commit introduces the command spack module tcl setdefault <package> similar to the one already available for lmod Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-23Added opensuse/leap:15 to spack containerize (#27837)Christian Goll2-5/+37
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-12-23Add option to minimize full debug cores. include warning message about ↵Greg Becker1-1/+1
performance (#27970) Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-12-23ci: run style unit tests only if we target develop (#27472)Harmen Stoppels1-5/+5
Some tests assume the base branch is develop, but this branch may not have been checked out.
2021-12-23Fix overloaded argparse keys (#27379)Harmen Stoppels1-6/+1
Commands should not reuse option names defined in main.
2021-11-05commands: `spack load --list` alias for `spack find --loaded` (#27184)Todd Gamblin6-1/+14
See #25249 and https://github.com/spack/spack/pull/27159#issuecomment-958163679. This adds `spack load --list` as an alias for `spack find --loaded`. The new command is not as powerful as `spack find --loaded`, as you can't combine it with all the queries or formats that `spack find` provides. However, it is more intuitively located in the command structure in that it appears in the output of `spack load --help`. The idea here is that people can use `spack load --list` for simple stuff but fall back to `spack find --loaded` if they need more. - add help to `spack load --list` that references `spack find` - factor some parts of `spack find` out to be called from `spack load` - add shell tests - update docs Co-authored-by: Peter Josef Scheibel <scheibel1@llnl.gov> Co-authored-by: Richarda Butler <39577672+RikkiButler20@users.noreply.github.com>
2021-11-05spack install: add --reuse argumentMassimiliano Culpo1-1/+1
2021-11-05spack concretize: add --reuse argumentMassimiliano Culpo1-1/+1
2021-11-05spack spec: add --reuse argumentMassimiliano Culpo1-2/+2
2021-11-05Update command completionMassimiliano Culpo1-1/+1
2021-11-04Add the spack tutorial environment as a cloud pipeline stack (#27137)Tamara Dahlgren2-0/+128
2021-11-02Bootstrap GnuPG (#24003)Massimiliano Culpo2-1/+205
* GnuPG: allow bootstrapping from buildcache and sources * Add a test to bootstrap GnuPG from binaries * Disable bootstrapping in tests * Add e2e test to bootstrap GnuPG from sources on Ubuntu * Add e2e test to bootstrap GnuPG on macOS
2021-11-02spack arch: add --generic argument (#27061)Michael Kuhn1-1/+1
The `--generic` argument allows printing the best generic target for the current machine. This can be quite handy when wanting to find the generic architecture to use when building a shared software stack for multiple machines.
2021-11-02Add tag filters to `spack test list` (#26842)Tamara Dahlgren1-1/+6
2021-11-01feature: add "spack tags" command (#26136)Tamara Dahlgren1-2/+11
This PR adds a "spack tags" command to output package tags or (available) packages with those tags. It also ensures each package is listed in the tag cache ONLY ONCE per tag.
2021-11-01ci: Enable more packages in the DVSDK CI pipeline (#27025)Chuck Atkins1-1/+10
* ci: Enable more packages in the DVSDK CI pipeline * doxygen: Add conflicts for gcc bugs * dray: Add version constraints for api breakage with newer deps
2021-10-29pipelines: llvm kills the xlarge, use huge (#27079)Scott Wittenburg2-3/+10
2021-10-29Fix exit codes posix shell wrapper (#27012)Harmen Stoppels2-6/+21
* Correct exit code in sh wrapper * Fix tests * SC2069
2021-10-29Fix exit codes in fish (#27028)Harmen Stoppels2-13/+29
2021-10-28bugfix: config edit should work with a malformed `spack.yaml`Todd Gamblin2-0/+75
If you don't format `spack.yaml` correctly, `spack config edit` still fails and you have to edit your `spack.yaml` manually. - [x] Add some code to `_main()` to defer `ConfigFormatError` when loading the environment, until we know what command is being run. - [x] Make `spack config edit` use `SPACK_ENV` instead of the config scope object to find `spack.yaml`, so it can work even if the environment is bad. Co-authored-by: scheibelp <scheibel1@llnl.gov>
2021-10-28Deactivate previous env before activating new one (#25409)Harmen Stoppels3-7/+85
* Deactivate previous env before activating new one Currently on develop you can run `spack env activate` multiple times to switch between environments, but they leave traces, even though Spack only supports one active environment at a time. Currently: ```console $ spack env create a $ spack env create b $ spack env activate -p a [a] $ spack env activate -p b [b] [a] $ spack env activate -p b [a] [b] [a] $ spack env activate -p a [a] [b] [c] $ echo $MANPATH | tr ":" "\n" /path/to/environments/a/.spack-env/view/share/man /path/to/environments/a/.spack-env/view/man /path/to/environments/b/.spack-env/view/share/man /path/to/environments/b/.spack-env/view/man ``` This PR fixes that: ```console $ spack env activate -p a [a] $ spack env activate -p b [b] $ spack env activate -p a [a] $ echo $MANPATH | tr ":" "\n" /path/to/environments/a/.spack-env/view/share/man /path/to/environments/a/.spack-env/view/man ```
2021-10-28spack setup-env.sh: make zsh loading async compatible, and ~10x faster (in ↵Tom Scogland3-10/+23
some cases) (#26120) Currently spack is a bit of a bad actor as a zsh plugin, and it was my fault. The autoload and compinit should really be handled by the user, as was made abundantly clear when I found spack was doing completion initialization for *all* of my plugins due to a deferred setup that was getting messed up by it. Making this conditional took spack load time from 1.5 seconds (with module loading disabled) to 0.029 seconds. I can actually afford to load spack by default with this change in. Hopefully someday we'll do proper zsh completion support, but for now this helps a lot. * use zsh hist expansion in place of dirname * only run (bash)compinit if compdef/complete missing * add zsh compiled files to .gitignore * move changes to .in file, because spack
2021-10-27Remove documentation tests from GitHub Actions (#26981)Massimiliano Culpo1-26/+0
We moved documentation tests to readthedocs since a while, so remove the one on GitHub.
2021-10-25containerize: pin the Spack version used in a container (#21910)Massimiliano Culpo11-4/+181
This PR permits to specify the `url` and `ref` of the Spack instance used in a container recipe simply by expanding the YAML schema as outlined in #20442: ```yaml container: images: os: amazonlinux:2 spack: ref: develop resolve_sha: true ``` The `resolve_sha` option, if true, verifies the `ref` by cloning the Spack repository in a temporary directory and transforming any tag or branch name to a commit sha. When this new ability is leveraged an additional "bootstrap" stage is added, which builds an image with Spack setup and ready to install software. The Spack repository to be used can be customized with the `url` keyword under `spack`. Modifications: - [x] Permit to pin the version of Spack, either by branch or tag or sha - [x] Added a few new OSes (centos:8, amazonlinux:2, ubuntu:20.04, alpine:3, cuda:11.2.1) - [x] Permit to print the bootstrap image as a standalone - [x] Add documentation on the new part of the schema - [x] Add unit tests for different use cases
2021-10-22E4S amd64 CI: add parsec (#26906)eugeneswalker1-0/+1
2021-10-21update E4S CI environments in preparation for 21.11 release (#26826)eugeneswalker2-283/+34
* update E4S CI environments in preparation for 21.11 release * e4s ci env: use clingo
2021-10-20Add --preferred and --latest to`spack checksum` (#25830)Tamara Dahlgren1-1/+1
2021-10-19Relax os constraints in e4s pipelines (#26547)Massimiliano Culpo3-3/+3
2021-10-19Gitlab pipelines: use images from the Spack organization (#26796)Massimiliano Culpo6-16/+13
2021-10-11Add `spack env activate --temp` (#25388)Harmen Stoppels3-3/+15
Creates an environment in a temporary directory and activates it, which is useful for a quick ephemeral environment: ``` $ spack env activate -p --temp [spack-1a203lyg] $ spack add zlib ==> Adding zlib to environment /tmp/spack-1a203lyg ==> Updating view at /tmp/spack-1a203lyg/.spack-env/view ```
2021-10-11Remove unused --dependencies flag (#25731)Harmen Stoppels1-1/+1
2021-10-01Retry pipeline generation jobs in certain casesScott Wittenburg1-0/+5
2021-10-01Add DAG scheduling to child pipelinesScott Wittenburg1-0/+30
2021-10-01Service jobs do not need an active environmentScott Wittenburg5-10/+0
2021-10-01Activate concrete env dir in all service jobsScott Wittenburg5-10/+6
2021-10-01Use same image to build e4s as to generate itScott Wittenburg1-3/+3
2021-10-01Use same image to build dvsdk as to generate itScott Wittenburg1-2/+2
2021-10-01Use default runner image for radiussScott Wittenburg1-6/+2
2021-09-30Build container images on Github Actions and push to multiple registries ↵Massimiliano Culpo5-28/+23
(#26247) Modifications: - Modify the workflow to build container images without pushing when the workflow file itself is modified - Strip the leading ghcr.io/spack/ from env.container env.versioned to prepare pushing to multiple registries - Fixed CentOS 7 and Amazon Linux builds - Login and push to Docker Hub as well as Github Action - Add a badge to README.md with the status of docker images
2021-09-24Pipelines: Disable ppc builds until we have resources or make it smaller ↵Scott Wittenburg1-24/+24
(#26238)
2021-09-24Remove centos:6 image references (#26095)Harmen Stoppels1-74/+0
This was EOL November 30th, 2020. I believe the "builds" are failing on develop because of it.
2021-09-14Make clingo the default solver (#25502)Massimiliano Culpo1-1/+1
Modifications: - [x] Change `defaults/config.yaml` - [x] Add a fix for bootstrapping patchelf from sources if `compilers.yaml` is empty - [x] Make `SPACK_TEST_SOLVER=clingo` the default for unit-tests - [x] Fix package failures in the e4s pipeline Caveats: 1. CentOS 6 still uses the original concretizer as it can't connect to the buildcache due to issues with `ssl` (bootstrapping from sources requires a C++14 capable compiler) 1. I had to update the image tag for GitlabCI in e699f14. 1. libtool v2.4.2 has been deprecated and other packages received some update
2021-09-14Pipelines: (Re)enable E4S on Power stack (#25921)Scott Wittenburg2-21/+21
Pipelines: (Re)enable E4S on Power stack
2021-09-13ci: Add ecp-data-vis-sdk CI pipeline (#22179)Chuck Atkins2-0/+92
* ci: Add a minimal subset of the ECP Data & Vis SDK CI pipeline * ci: Expand the ECP Data & Vis SDK pipeline with more variants
2021-09-10Pipelines: build kokkos-kernels on bigger instance (#25845)Scott Wittenburg1-0/+1
2021-09-09specs: move to new spec.json format with build provenance (#22845)Nathan Hanford1-8/+8
This is a major rework of Spack's core core `spec.yaml` metadata format. It moves from `spec.yaml` to `spec.json` for speed, and it changes the format in several ways. Specifically: 1. The spec format now has a `_meta` section with a version (now set to version `2`). This will simplify major changes like this one in the future. 2. The node list in spec dictionaries is no longer keyed by name. Instead, it is a list of records with no required key. The name, hash, etc. are fields in the dictionary records like any other. 3. Dependencies can be keyed by any hash (`hash`, `full_hash`, `build_hash`). 4. `build_spec` provenance from #20262 is included in the spec format. This means that, for spliced specs, we preserve the *full* provenance of how to build, and we can reproduce a spliced spec from the original builds that produced it. **NOTE**: Because we have switched the spec format, this PR changes Spack's hashing algorithm. This means that after this commit, Spack will think a lot of things need rebuilds. There are two major benefits this PR provides: * The switch to JSON format speeds up Spack significantly, as Python's builtin JSON implementation is orders of magnitude faster than YAML. * The new Spec format will soon allow us to represent DAGs with potentially multiple versions of the same dependency -- e.g., for build dependencies or for compilers-as-dependencies. This PR lays the necessary groundwork for those features. The old `spec.yaml` format continues to be supported, but is now considered a legacy format, and Spack will opportunistically convert these to the new `spec.json` format.
2021-09-08url stats: add `--show-issues` option (#25792)Todd Gamblin1-1/+1
* tests: make `spack url [stats|summary]` work on mock packages Mock packages have historically had mock hashes, but this means they're also invalid as far as Spack's hash detection is concerned. - [x] convert all hashes in mock package to md5 or sha256 - [x] ensure that all mock packages have a URL - [x] ignore some special cases with multiple VCS fetchers * url stats: add `--show-issues` option `spack url stats` tells us how many URLs are using what protocol, type of checksum, etc., but it previously did not tell us which packages and URLs had the issues. This adds a `--show-issues` option to show URLs with insecure (`http`) URLs or `md5` hashes (which are now deprecated by NIST).
2021-09-06Update pinned OpenSSL version to 1.1.1l (#25787)Scott Wittenburg2-2/+2
Update to the latest version of openssl, as the previous one (1.1.1k) is now deprecated, so spack can no longer rebuild it from source.
2021-09-02start of work to add spack audit packages-https checker (#25670)Vanessasaurus1-1/+10
This PR will add a new audit, specifically for spack package homepage urls (and eventually other kinds I suspect) to see if there is an http address that can be changed to https. Usage is as follows: ```bash $ spack audit packages-https <package> ``` And in list view: ```bash $ spack audit list generic: Generic checks relying on global variables configs: Sanity checks on compilers.yaml Sanity checks on packages.yaml packages: Sanity checks on specs used in directives packages-https: Sanity checks on https checks of package urls, etc. ``` I think it would be unwise to include with packages, because when run for all, since we do requests it takes a long time. I also like the idea of more well scoped checks - likely there will be other addresses for http/https within a package that we eventually check. For now, there are two error cases - one is when an https url is tried but there is some SSL error (or other error that means we cannot update to https): ```bash $ spack audit packages-https zoltan PKG-HTTPS-DIRECTIVES: 1 issue found 1. Error with attempting https for "zoltan": <urlopen error [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: Hostname mismatch, certificate is not valid for 'www.cs.sandia.gov'. (_ssl.c:1125)> ``` This is either not fixable, or could be fixed with a change to the url or (better) contacting the site owners to ask about some certificate or similar. The second case is when there is an http that needs to be https, which is a huge issue now, but hopefully not after this spack PR. ```bash $ spack audit packages-https xman Package "xman" uses http but has a valid https endpoint. ``` And then when a package is fixed: ```bash $ spack audit packages-https zlib PKG-HTTPS-DIRECTIVES: 0 issues found. ``` And that's mostly it. :) Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
generated by cgit v1.2.3-70-g09d2 (git 2.46.0) at 2024-11-24 21:06:30 +0000