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2017-05-03bash completion: fixed invalid identifier (#4079)Massimiliano Culpo1-1/+4
* bash completion: fixed `_spack_create-db-tarball': not a valid identifier * bash completion: dashes are translated to underscores This also fixes the name of the subfunction to be called, as apparently it was not updated after moving the command `create-db-tarball`.
2017-05-01Allow user to specify profile sort column on the command line. (#4056)Todd Gamblin1-0/+3
- Add -P <STAT> argument so that caller can specify a sort column for cProfile. Can specify multiple columns with commas. e.g.: spack -P cumtime,module - Add --lines option to Spack spec to control number of profile lines displayed - Sort by time by default (because it works in all Python versions) - Show sort column options in command help. - Do a short profile run in the unit tests.
2017-04-27Separate integration tests; simplify test scripts (#4006)Todd Gamblin6-174/+161
* Separate build integration tests; simplify test scripts - Move build tests out of the regular Travis unit tests, add more smoke test packages to build. - Run all test scripts with bash -e, which fails on error. - Factor coverage out into a Travis environment variable, so it's more obvious from .travis.yml which tests contribute to coverage and which don't. - Factor dependency checking and much of the front-matter in tests scripts into a setup.sh script, which is sourced by all the test scripts. Extra cruft in each tests script now reduced to 2 lines at the beginning.
2017-04-21Coverage for multiple Python versions. (#3951)Todd Gamblin1-1/+3
Update tests to use codecov for multiple python versions.
2017-04-20Revert "Override partial installs by default" (#3918)Todd Gamblin1-1/+1
* Revert "Override partial installs by default (#3530)" This reverts commit a65c37f15dff4b4d60784fd4fcc55874ce9d6d11.
2017-04-20Revert "Add lmod files to MODULEPATH" (#3917)Todd Gamblin1-2/+0
* Revert "Add lmod files to MODULEPATH (#3912)" This reverts commit 186d1f4511c8aa3bc5ce661b1e883db10e20958a.
2017-04-19Override partial installs by default (#3530)scheibelp1-1/+1
* Package install remove prior unfinished installs Depending on how spack is terminated in the middle of building a package it may leave a partially installed package in the install prefix. Originally Spack treated the package as being installed if the prefix was present, in which case the user would have to manually remove the installation prefix before restarting an install. This commit adds a more thorough check to ensure that a package is actually installed. If the installation prefix is present but Spack determines that the install did not complete, it removes the installation prefix and starts a new install; if the user has enabled --keep-prefix, then Spack reverts to its old behavior. * Added test for partial install handling * Added test for restoring DB * Style fixes * Restoring 2.6 compatibility * Relocated repair logic to separate function * If --keep-prefix is set, package installs will continue an install from an existing prefix if one is present * check metadata consistency when continuing partial install * Added --force option to make spack reinstall a package (and all dependencies) from scratch * Updated bash completion; removed '-f' shorthand for '--force' for install command * dont use multiple write modes for completion file
2017-04-19Add lmod files to MODULEPATH (#3912)Adam J. Stewart1-0/+2
2017-04-03Overhaul Spack's URL parsing (#2972)Adam J. Stewart1-4/+5
* Remove fake URLs from Spack * Ignore long lines for URLs that start with ftp: * Preliminary changes to version regexes * New redesign of version regexes * Allow letters in version-only * Fix detection of versions that end in Final * Rearrange a few regexes and add examples * Add tests for common download repositories * Add test cases for common tarball naming schemes * Finalize version regexes * spack url test -> spack url summary * Clean up comments * Rearrange suffix checks * Use query strings for name detection * Remove no longer necessary url_for_version functions * Strip off extraneous information after package name * Add one more test * Dot in square brackets does not need to be escaped * Move renaming outside of parse_name_offset * Fix versions for a couple more packages * Fix flake8 and doc tests * Correctly parse Python, Lua, and Bio++ package names * Use effective URLs for mfem * Add checksummed version to mitos * Remove url_for_version from STAR-CCM+ package * Revert changes to version numbers with underscores and dashes * Fix name detection for tbb * Correctly parse Ruby gems * Reverted mfem back to shortened URLs. * Updated instructions for better security * Remove preferred=True from newest version * Add tests for new `spack url list` flags * Add tests for strip_name_suffixes * Add unit tests for version separators * Fix bugs related to parseable name but in parseable version * Remove dead code, update docstring * Ignore 'binary' at end of version string * Remove platform from version * Flip libedit version numbers * Re-support weird NCO alpha/beta versions * Rebase and remove one new fake URL * Add / to beginning of regex to avoid picking up similarly named packages * Ignore weird tar versions * Fix bug in url parse --spider when no versions found * Less strict version matching for spack versions * Don't rename Python packages * Be a little more selective, version must begin with a digit * Re-add fake URLs * Fix up several other packages * Ignore more file endings * Add parsing support for Miniconda * Update tab completion * XFAILS are now PASSES for 2 web tests
2017-04-02Set default providers for all virtual dependencies (#3634)Adam J. Stewart1-2/+2
* Set default providers for everything * Add default OpenFOAM provider
2017-03-30support OpenFOAM package(s) (#3528)Mark Olesen1-1/+1
* ENH: add package for building OpenFOAM (1612) from www.openfoam.com - provide 'openfoam' as virtual package. - package as openfoam-com to reflect the distribution point. This initial spack packaging for OpenFOAM supports a number of possible variants and should handle 64-bit labels properly now that the scotch package has been updated accordingly. * ENH: update package for foam-extend (extend-project.de) - provide 'openfoam' as virtual package. - much of the build is now aligned with how the openfoam-com package looks, with the aim of future refactoring. - avoid installing intermediate targets. - contains its own environment sourcing script for the build, for more flexibility and robustness (doesn't touch the python build environ) * ENH: added package for building from openfoam.org - provide 'openfoam' as a virtual package. - this is largely a direct copy of the openfoam-com package. It has been supplied as a courtesy for users and to ensure maximum consistency in quality and naming between the foam-extend, openfoam-com and openfoam-org packages. * CONFIG: add openfoam into bash completion providers list * ENH: have openfoam-com use spack as USERMPI - also simplify the generation of mplib/compiler rules * ENH: have openfoam-org use spack as SYSTEMMPI - this setup requires more environment settings than USERMPI (openfoam-com), but is currently the only means of integration for openfoam-org - simplify generation of mplib/compiler rules * ENH: simplify generation of mplib/compiler rules (foam-extend) - rename mpi rules from SPACK,SPACKMPI to USER,USERMPI for consistency with openfoam-com and to generalize for any build system. * STYLE: record spack tree as a log file (openfoam) - can be useful for future diagnostics and general record keeping
2017-02-20Fix tab completion of directories and filenames (#3184)Adam J. Stewart1-35/+11
2017-02-18Fix tab completion after change to uninstall flag (#3175)Adam J. Stewart1-1/+1
2017-02-06Bash Programmable Completion for Spack (#3026)Adam J. Stewart2-0/+939
2017-01-23Export spack function so it works in subshells (#2908)Michael Kuhn1-0/+5
2017-01-01tests: `coverage combine` run only if tests succeeded (#2712)Massimiliano Culpo1-2/+1
2016-12-30Run coverage for the `spack install` command as well as `spack test`.Todd Gamblin1-1/+2
- Also don't run coverage on OSX.
2016-12-29unit tests: replace nose with pytest (#2502)Massimiliano Culpo2-32/+6
* Porting: substitute nose with ytest This huge commit substitutes nose with pytest as a testing system. Things done here: * deleted external/nose as it is no longer used * moved mock resources in their own directory 'test/mock/' * ported two tests (cmd/find, build_system) to pytest native syntax as an example * build_environment, log: used monkeypatch instead of try/catch * moved global mocking of fetch_cache to an auto-used fixture * moved global mocking from test/__init__.py to conftest.py * made `spack test` a wrapper around pytest * run-unit-tests: avoid running python 2.6 tests under coverage to speed them up * use `pytest --cov` instead of coverage run to cut down testing time * mock/packages_test: moved mock yaml configuration to files instead of leaving it in the code as string literals * concretize.py: ported tests to native pytest, reverted multiprocessing in pytest.ini as it was creating the wrong report for coveralls * conftest.py, fixtures: added docstrings * concretize_preferences.py: uses fixtures instead of subclassing MockPackagesTest * directory_layout.py: uses fixtures instead of subclassing MockPackagesTest * install.py: uses fixtures instead of subclassing MockPackagesTest * optional_deps.py: uses fixtures instead of subclassing MockPackagesTest optional_deps.py: uses fixtures instead of subclassing MockPackagesTest * packages.py: uses fixtures instead of subclassing MockPackagesTest * provider_index.py: uses fixtures instead of subclassing MockPackagesTest * spec_yaml.py: uses fixtures instead of subclassing MockPackagesTest * multimethod.py: uses fixtures instead of subclassing MockPackagesTest * install.py: now uses mock_archive_url * git_fetch.py: uses fixtures instead of subclassing MockPackagesTest * hg_fetch.py: uses fixtures instead of subclassing MockPackagesTest * svn_fetch.py, mirror.py: uses fixtures instead of subclassing MockPackagesTest repo.py: deleted * test_compiler_cmd.py: uses fixtures instead of subclassing MockPackagesTest * cmd/module.py, cmd/uninstall.py: uses fixtures instead of subclassing MockDatabase * database.py: uses fixtures instead of subclassing MockDatabase, removed mock/database * pytest: uncluttering fixture implementations * database: changing the scope to 'module' * config.py: uses fixtures instead of subclassing MockPackagesTest * spec_dag.py, spec_semantics.py: uses fixtures instead of subclassing MockPackagesTest * stage.py: uses fixtures instead of subclassing MockPackagesTest. Removed mock directory * pytest: added docstrings to all the fixtures * pytest: final cleanup * build_system_guess.py: fixed naming and docstrings as suggested by @scheibelp * spec_syntax.py: added expected failure on parsing multiple specs closes #1976 * Add pytest and pytest-cov to Spack externals. * Make `spack flake8` ignore externals. * run-unit-tests runs spack test and not pytest. * Remove all the special stuff for `spack test` - Remove `conftest.py` magic and all the special case stuff in `bin/spack` - Spack commands can optionally take unknown arguments, if they want to handle them. - `spack test` is now a command like the others. - `spack test` now just delegates its arguments to `pytest`, but it does it by receiving unknown arguments and NOT taking an explicit help argument. * Fix error in fixtures. * Improve `spack test` command a bit. - Now supports an approximation of the old simple interface - Also supports full pytest options if you want them. * Use external coverage instead of pytest-cov * Make coverage use parallel-mode. * change __init__.py docs to include pytest
2016-11-29Allow shell support to work when set -u is set (#2418)Adam J. Stewart1-1/+1
2016-11-12Basic usage step-by-step tutorialGregory Becker1-2/+1
2016-11-04setup script for bash : fixes #2209 for sh setup (#2212)Massimiliano Culpo1-2/+4
2016-10-31Add `spack flake8` command. (#2186)Todd Gamblin1-63/+3
- Ported old run-flake8-tests qa script to `spack flake8` command. - New command does not modify files in the source tree - Copies files to a temp stage modifies them there, and runs tests. - Updated docs and `run-flake8-tests` script to call `spack flake8`.
2016-10-06Feature Proposal : Make All Python Extensions User Configuration Independent ↵Joseph Ciurej1-5/+0
(#1435) * Updated all Python extension packages to use 'setup_py' on install. * Fixed a few minor style issues with the updated Python packages.
2016-10-05Add missing dependencies for Flake8 (#1883)Adam J. Stewart2-4/+30
* Warn user if flake8 can't find setuptools * Add missing dependencies of flake8 * Updates to py-autopep8, make packages activateable * Check for presence of setuptools for Sphinx too * Fix bug in order of commands
2016-10-02Run make clean to prevent warning messages (#1742)Adam J. Stewart1-4/+2
* Run make clean to prevent warning messages * Don't delete temporary files after completion
2016-09-23Remove duplicate ICU package (#1837)Adam J. Stewart1-3/+3
* Remove duplicate ICU package * Ignore deleted files during flake8 tests * Rename Boost ICU variant
2016-09-08Add missing dependency for run-doc-tests (#1691)Adam J. Stewart2-0/+4
2016-08-30Always run spack unit testsAdam J. Stewart1-21/+0
2016-08-30Add spack to the PATH for doc testsAdam J. Stewart1-0/+3
2016-08-30Remove py-mercurial, going with mercurial package insteadAdam J. Stewart1-1/+1
2016-08-30Always run Documentation testsAdam J. Stewart1-10/+2
2016-08-30Added more missing dependenciesAdam J. Stewart3-10/+28
2016-08-30Add mercurial package, used as test dependencyAdam J. Stewart3-6/+33
2016-08-30Only run unit tests when core Spack framework is modifiedAdam J. Stewart4-53/+127
2016-08-30Run documentation tests when documentation is modifiedAdam J. Stewart2-3/+38
2016-08-30Add generic changed_files scriptAdam J. Stewart2-16/+54
2016-08-30Overhaul Spack's CI InfrastructureAdam J. Stewart2-1/+5
2016-08-28Run flake8 checks on new untracked files (#1510)Adam J. Stewart1-0/+2
2016-08-11Always clean up tmp files, even if killedAdam J. Stewart1-10/+14
2016-08-11Allow run-flake8 to be run from anywhereAdam J. Stewart1-5/+3
2016-08-11Run flake8 checks on changed uncommitted filesAdam J. Stewart1-7/+14
2016-08-10Make Spack core PEP8 compliant.Todd Gamblin1-4/+13
2016-07-30qa : fixes #1370 (no flake8 on python 2.6, coveralls only python 2.7)alalazo1-0/+20
2016-07-22Adding temporary script that fixes all Python extensions w/ 'setup_py'.Joseph Ciurej1-0/+5
2016-07-21Fix recursive module loading.Michael Kuhn1-4/+4
2016-07-18Merge branch 'develop' of https://github.com/LLNL/spack into ↵alalazo2-9/+22
features/module_refresh Conflicts: share/spack/setup-env.sh
2016-07-15Merge pull request #1246 from suraia/improve-shell-integrationbecker331-8/+20
Improve shell integration.
2016-07-15Updates to run-flake8 testAdam J. Stewart1-1/+2
2016-07-14Support --dependencies for recursively loading modules.Michael Kuhn1-1/+1
2016-07-13Improve shell integration.Michael Kuhn1-8/+20
Enable sh emulation for Zsh and allow loading modules recursively.
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