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Co-authored-by: wspear <wjspear@gmail.com>
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* e4s ci: add exago +cuda, +rocm builds
* exago: rename 5-18-2022-snapshot to snapshot.5-18-2022
* disable exago +rocm for non-external rocm ci install
* note that hiop +rocm fails to find hip libraries when they are spack-installed
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Credits to @ChristianKniep for advocating the idea of OCI image layers
being identical to spack buildcache tarballs.
With this you can configure an OCI registry as a buildcache:
```console
$ spack mirror add my_registry oci://user/image # Dockerhub
$ spack mirror add my_registry oci://ghcr.io/haampie/spack-test # GHCR
$ spack mirror set --push --oci-username ... --oci-password ... my_registry # set login credentials
```
which should result in this config:
```yaml
mirrors:
my_registry:
url: oci://ghcr.io/haampie/spack-test
push:
access_pair: [<username>, <password>]
```
It can be used like any other registry
```
spack buildcache push my_registry [specs...]
```
It will upload the Spack tarballs in parallel, as well as manifest + config
files s.t. the binaries are compatible with `docker pull` or `skopeo copy`.
In fact, a base image can be added to get a _runnable_ image:
```console
$ spack buildcache push --base-image ubuntu:23.04 my_registry python
Pushed ... as [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
$ docker run --rm -it [image]:python-3.11.2-65txfcpqbmpawclvtasuog4yzmxwaoia.spack
```
which should really be a game changer for sharing binaries.
Further, all content-addressable blobs that are downloaded and verified
will be cached in Spack's download cache. This should make repeated
`push` commands faster, as well as `push` followed by a separate
`update-index` command.
An end to end example of how to use this in Github Actions is here:
**https://github.com/haampie/spack-oci-buildcache-example**
TODO:
- [x] Generate environment modifications in config so PATH is set up
- [x] Enrich config with Spack's `spec` json (this is allowed in the OCI specification)
- [x] When ^ is done, add logic to create an index in say `<image>:index` by fetching all config files (using OCI distribution discovery API)
- [x] Add logic to use object storage in an OCI registry in `spack install`.
- [x] Make the user pick the base image for generated OCI images.
- [x] Update buildcache install logic to deal with absolute paths in tarballs
- [x] Merge with `spack buildcache` command
- [x] Merge #37441 (included here)
- [x] Merge #39077 (included here)
- [x] #39187 + #39285
- [x] #39341
- [x] Not a blocker: #35737 fixes correctness run env for the generated container images
NOTE:
1. `oci://` is unfortunately taken, so it's being abused in this PR to mean "oci type mirror". `skopeo` uses `docker://` which I'd like to avoid, given that classical docker v1 registries are not supported.
2. this is currently `https`-only, given that basic auth is used to login. I _could_ be convinced to allow http, but I'd prefer not to, given that for a `spack buildcache push` command multiple domains can be involved (auth server, source of base image, destination registry). Right now, no urllib http handler is added, so redirects to https and auth servers with http urls will simply result in a hard failure.
CAVEATS:
1. Signing is not implemented in this PR. `gpg --clearsign` is not the nicest solution, since (a) the spec.json is merged into the image config, which must be valid json, and (b) it would be better to sign the manifest (referencing both config/spec file and tarball) using more conventional image signing tools
2. `spack.binary_distribution.push` is not yet implemented for the OCI buildcache, only `spack buildcache push` is. This is because I'd like to always push images + deps to the registry, so that it's `docker pull`-able, whereas in `spack ci` we really wanna push an individual package without its deps to say `pr-xyz`, while its deps reside in some `develop` buildcache.
3. The `push -j ...` flag only works for OCI buildcache, not for others
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otherwise it detected pre-configured compilers in an potentially different way.
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Update Tcl modulefile template to simplify generated `append-path`,
`prepend-path` and `remove-path` commands and improve their readability.
If path element delimiter is colon character, do not set the `--delim`
option as it is the default delimiter value.
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* ci: don't register detectable compilers
Cause they go out of sync...
* remove intel compiler, it can be detected too
* Do not run spack compiler find since compilers are registered in concretize job already
* trilinos: work around +stokhos +cuda +superlu-dist bug due to EMPTY macro
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* adios2: update variants and dependencies
* adios2: add kokkos rocm|cuda|sycl variant
* e4s oneapi ci stack: add adios2 +sycl
* e4s ci stack: add adios2 +rocm
* [@spackbot] updating style on behalf of vicentebolea
* Apply suggestions from code review
* adios2: fixed cuda variant
* update ecp-data-vis-sdk
* Update share/spack/gitlab/cloud_pipelines/stacks/e4s-power/spack.yaml
---------
Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
Co-authored-by: vicentebolea <vicentebolea@users.noreply.github.com>
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when verbose (#40634)
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* gromacs +cp2k: build in CI
* libxsmm: x86 only
* attempt to fix dbcsr + new mpich
* use c11 standard
* gromacs: does not depend on dbcsr
* cp2k: build with cmake in CI, s.t. dbcsr is a separate package
* cp2k: cmake patches for config files and C/C++ std
* cp2k: remove unnecessary constraints due to patch
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This adds a `SetupContext` class which is responsible for setting
package.py module globals, and computing the changes to environment
variables for the build, test or run context.
The class uses `effective_deptypes` which takes a list of specs (e.g. single
item of a spec to build, or a list of environment roots) and a context
(build, run, test), and outputs a flat list of specs that affect the
environment together with a flag in what way they do so. This list is
topologically ordered from root to leaf, so that one can be assured that
dependents override variables set by dependencies, not the other way
around.
This is used to replace the logic in `modifications_from_dependencies`,
which has several issues: missing calls to `setup_run_environment`, and
the order in which operations are applied.
Further, it should improve performance a bit in certain cases, since
`effective_deptypes` run in O(v + e) time, whereas `spack env activate`
currently can take up to O(v^2 + e) time due to loops over roots. Each
edge in the DAG is visited once by calling `effective_deptypes` with
`env.concrete_roots()`.
By marking and propagating flags through the DAG, this commit also fixes
a bug where Spack wouldn't call `setup_run_environment` for runtime
dependencies of link dependencies. And this PR ensures that Spack
correctly sets up the runtime environment of direct build dependencies.
Regarding test dependencies: in a build context they are are build-time
test deps, whereas in a test context they are install-time test deps.
Since there are no means to distinguish the build/install type test deps,
they're both.
Further changes:
- all `package.py` module globals are guaranteed to be set before any of the
`setup_(dependent)_(run|build)_env` functions is called
- traversal order during setup: first the group of externals, then the group
of non-externals, with specs in each group traversed topological (dependencies
are setup before dependents)
- modules: only ever call `setup_dependent_run_environment` of *direct* link/run
type deps
- the marker in `set_module_variables_for_package` is dropped, since we should
call the method once per spec. This allows us to set only a cheap subset of
globals on the module: for example it's not necessary to compute the expensive
`cmake_args` and w/e if the spec under consideration is not the root node to be
built.
- `spack load`'s `--only` is deprecated (it has no effect now), and `spack load x`
now means: do everything that's required for `x` to work at runtime, which
requires runtime deps to be setup -- just like `spack env activate`.
- `spack load` no longer loads build deps (of build deps) ...
- `spack env activate` on partially installed or broken environments: this is all
or nothing now. If some spec errors during setup of its runtime env, you'll only
get the unconditional variables + a warning that says the runtime changes for
specs couldn't be applied.
- Remove traversal in upward direction from `setup_dependent_*` in packages.
Upward traversal may iterate to specs that aren't children of the roots
(e.g. zlib / python have hundreds of dependents, only a small fraction is
reachable from the roots. Packages should only modify the direct dependent
they receive as an argument)
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Improve how mirrors are used in gitlab ci, where we have until now thought
of them as only a string.
By configuring ci mirrors ahead of time using the proposed mirror templates,
and by taking advantage of the expressiveness that spack now has for mirrors,
this PR will allow us to easily switch the protocol/url we use for fetching
binary dependencies.
This change also deprecates some gitlab functionality and marks it for
removal in Spack 0.23:
- arguments to "spack ci generate":
* --buildcache-destination
* --copy-to
- gitlab configuration options:
* enable-artifacts-buildcache
* temporary-storage-url-prefix
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Currently `spack env activate --with-view` exists, but is a no-op.
So, it is not too much of a breaking change to make this redundant flag
accept a value `spack env activate --with-view <name>` which activates
a particular view by name.
The view name is stored in `SPACK_ENV_VIEW`.
This also fixes an issue where deactivating a view that was activated
with `--without-view` possibly removes entries from PATH, since now we
keep track of whether the default view was "enabled" or not.
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* Add support for Python 3.12
* Use optimized build of clingo
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* e4s arm stack: duplicate and target both neoverse n1, v1
* remove neoverse_n1 target until issue #40397 is resolved
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* Change 'exit' to 'return' in `setup-env.sh` to avoid losing shell in some cases when sourcing twice.
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* Allow branching out of the "generic build" unification set
For cases like the one in https://github.com/spack/spack/pull/39661
we need to relax rules on unification sets.
The issue is that, right now, nodes in the "generic build" unification
set are unified together with their build dependencies. This was done
out of caution to avoid the risk of circular dependencies, which would
ultimately cause a very slow solve.
For build-tools like Cython, however, the build dependencies is masked
by a long chain of "build, run" dependencies that belong in the
"generic build" unification space.
To allow splitting on cases like this, we relax the rule disallowing
branching out of the "generic build" unification set.
* Fix issue with pure build virtual dependencies
Pure build virtual dependencies were not accounted properly in the
list of possible virtuals. This caused some facts connecting virtuals
to the corresponding providers to not be emitted, and in the end
lead to unsat problems.
* Fixed a few issues in packages
py-gevent: restore dependency on py-cython@3
jsoncpp: fix typo in build dependency
ecp-data-vis-sdk: update spack.yaml and cmake recipe
py-statsmodels: add v0.13.5
* Make dependency on "blt" of type "build"
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This reverts commit bf7f54449ba8ed157c9ee258007e0a7a509600cf.
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* e4s amd64 gcc ci stack: sync with e4s-23.08
* e4s amd64 oneapi ci stack: sync with e4s-23.08
* e4s ppc64 gcc ci stack: sync with e4s-23.08
* add new ci stack: e4s amd64 gcc w/ external rocm
* add new ci stack: e4s arm gcc ci
* updates
* py-scipy: -fvisibility issue is resolved in 2023.1.0: #39464
* paraview oneapi fails
* comment out pkgs that fail to build on power
* fix arm stack name
* fix cabana +cuda specification
* comment out failing spces
* visit fails build on arm
* comment out slepc arm builds due to make issue
* comment out failing dealii arm builds
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This reverts commit 027409120408eb4d41d8bdd82a13c34b3ac7fea9.
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* Implemented +sycl for slate
* style
* style
* add slate +sycl to ci
* slate +sycl: explicitly specify +mpi
* comment out slate+sycl+mpi in e4s oneapi stack
* removing requirement of intel-oneapi-mpi
* Added slate+sycl to e4s oneapi stack
* Removing obsolete comment
---------
Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
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* py-scipy: -fvisibility issue is resolved in 2023.1.0:
* e4s oneapi ci: add py-scipy
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* e4s cray sles stack: expand spec list
* remove unnecessary packages:trilinos:one_of
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* e4s ci: add packages: drishti, dxt-explorer
* e4s oneapi ci: comment out dxt-explorer until r%oneapi issue #40257 is resolved
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This PR adds a new audit sub-command to check that detection of relevant packages
is performed correctly in a few scenarios mocking real use-cases. The data for each
package being tested is in a YAML file called detection_test.yaml alongside the
corresponding package.py file.
This is to allow encoding detection tests for compilers and other widely used tools,
in preparation for compilers as dependencies.
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(#40238)
This reverts commit 5165524ca6eb9cb0b8c2e225352e4729b5a04062.
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* trilinos +shylu: patch to resolve trilinos issue #12048
* e4s ci: build xyce ^trilinos+shylu
---------
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
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* e4s cray rhel stack: expand to full spec list
* comment out gasnet; require %gcc for unzip
* require openblas@0.3.20 to get around %cce error; follow up with issue report
* comment out failing specs;
* comment out axom and xyce due to errors
* improve clarity of failing specs
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This reverts commit bd8d0324a9a06c7acd81485b265ec2a48b579cec.
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Fix a race condition when searching urls, and updating a shared
set '_visited'.
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This reverts commit 2c13361b09c552427623f9e8a728fad94e3de4e9.
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