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It was time to run `spack license update-copyright-year` again.
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This patch adds license information for about 5,300 packages from automated sources.
The license information was obtained from Alpine Linux and PyPI and processed
using tooling available in https://github.com/boomanaiden154/spack-license-utils.
The license field was added in after all other directives in an automated fashion.
Note that while this license information is probably fairly accurate, it is not
guaranteed to be accurate. In addition some of the license strings from Alpine Linux
might not be valid SPDX license strings. Invalid SPDX identifiers can be picked up
and fixed once we have validation/parsing infrastructure in place for the solver,
and issues can be fixed as they come up.
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* adios2: update variants and dependencies
* adios2: add kokkos rocm|cuda|sycl variant
* e4s oneapi ci stack: add adios2 +sycl
* e4s ci stack: add adios2 +rocm
* [@spackbot] updating style on behalf of vicentebolea
* Apply suggestions from code review
* adios2: fixed cuda variant
* update ecp-data-vis-sdk
* Update share/spack/gitlab/cloud_pipelines/stacks/e4s-power/spack.yaml
---------
Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
Co-authored-by: vicentebolea <vicentebolea@users.noreply.github.com>
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* adios2: correct c-blosc dependency
* c-blosc2: disable oneapi spec
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This switches the default Make build type to `build_type=Release`.
This offers:
- higher optimization level, including loop vectorization on older GCC
- adds NDEBUG define, which disables assertions, which could cause speedups if assertions are in loops etc
- no `-g` means smaller install size
Downsides are:
- worse backtraces (though this does NOT strip symbols)
- perf reports may be useless
- no function arguments / local variables in debugger (could be of course)
- no file path / line numbers in debugger
The downsides can be mitigated by overriding to `build_type=RelWithDebInfo` in `packages.yaml`,
if needed. The upside is that builds will be MUCH smaller (and faster) with this change.
---------
Co-authored-by: Gregory Becker <becker33@llnl.gov>
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* license bump year
* fix black issues of modified files
* mypy
* fix 2021 -> 2023
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See https://community.intel.com/t5/Intel-Fortran-Compiler/version-node-not-found-for-symbol/m-p/1443784/thread-id/164290
Fixes https://github.com/spack/spack/issues/31817
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
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* E4S: Conservatively add ecp-data-vis-sdk
* Remove ascent from CUDA SDK stack to stop hanging on Dray
* Adios2: Newer FindPython uses Python_EXECUTABLE
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* Add libpressio and dependencies; some of these packages are
maintained as forks of the original repositories and in those
cases the docstring mentions this.
* Add optional dependency in adios2 on libpressio
* cub package: set CUB_DIR environment variable for dependent
installations
* Clear R_HOME/R_ENVIRON before Spack installation (avoid sources
outside of Spack from affecting the installation in Spack)
* Rename dlib to dorian3d-dlib and update dependents; add new dlib
implementation. Pending an official policy on how to handle
packages with short names, reviewer unilaterally decided that
the rename was acceptable given that the new Spack dlib package
is referenced more widely (by orders of magnitude) than the
original
Co-authored-by: Samuel Li <shaomeng@users.noreply.github.com>
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* ADIOS2: ZFP<1.0
The tagged ADIOS2 releases in Spack (and develop) do not yet
work with ZFP 1.0. Express valid depedency range before someone
updates the ZFP package and triggers the incompatibility.
* Use semver
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Add the latest ADIOS2 release.
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Explicitly import package utilities in all packages, and corresponding fallout.
This includes:
* rename `spack.package` to `spack.package_base`
* rename `spack.pkgkit` to `spack.package`
* update all packages in builtin, builtin_mock and tutorials to include `from spack.package import *`
* update spack style
* ensure packages include the import
* automatically add the new import and remove any/all imports of `spack` and `spack.pkgkit`
from packages when using `--fix`
* add support for type-checking packages with mypy when SPACK_MYPY_CHECK_PACKAGES
is set in the environment
* fix all type checking errors in packages in spack upstream
* update spack create to include the new imports
* update spack repo to inject the new import, injection persists to allow for a deprecation period
Original message below:
As requested @adamjstewart, update all packages to use pkgkit. I ended up using isort to do this,
so repro is easy:
```console
$ isort -a 'from spack.pkgkit import *' --rm 'spack' ./var/spack/repos/builtin/packages/*/package.py
$ spack style --fix
```
There were several line spacing fixups caused either by space manipulation in isort or by packages
that haven't been touched since we added requirements, but there are no functional changes in here.
* [x] add config to isort to make sure this is maintained going forward
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The number of commit characters in patch files fetched from GitHub can change,
so we should use `full_index=1` to enforce full commit hashes (and a stable
patch `sha256`).
Similarly, URLs for branches like `master` don't give us stable patch files,
because branches are moving targets. Use specific tags or commits for those.
- [x] update all github patch URLs to use `full_index=1`
- [x] don't use `master` or other branches for patches
- [x] add an audit check and a test for `?full_index=1`
Co-authored-by: Todd Gamblin <tgamblin@llnl.gov>
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* ECP-SDK: Require HDF5 1.12
* ECP-SDK: Require SDK spec for SDK packages
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* adios2: Fix compile errors for gcc 11
* unifyfs: Suppress bogus warnings for gcc 11
* conduit: Fix compile errors for gcc 11
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Add 'e4s' tags for all packages according to https://github.com/E4S-Project/e4s/blob/master/E4S_Products.md
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* fix remaining flake8 errors
* imports: sort imports everywhere in Spack
We enabled import order checking in #23947, but fixing things manually drives
people crazy. This used `spack style --fix --all` from #24071 to automatically
sort everything in Spack so PR submitters won't have to deal with it.
This should go in after #24071, as it assumes we're using `isort`, not
`flake8-import-order` to order things. `isort` seems to be more flexible and
allows `llnl` mports to be in their own group before `spack` ones, so this
seems like a good switch.
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Example replacement:
```
'-D(\w+)(:BOOL)?=\{0\}'\.\s*format\s*\(\s*'(ON|YES|true|TRUE)' if '\+(\w+)' in (self\.)?spec else '(OFF|NO|false|FALSE)'\)
```
with
```
self.define_from_variant('\1', '\4')
```
This will cause failures if any variants were misspelled: I have already caught two packages with nonexistent variants.
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Add the latest release of ADIOS2.
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- Typo in the SZ version (:ver should have been ver:)
- Patch to fix python dependency when testing is disabled
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This release also includes the HDF5 VOL plugin so I've added an additional
funciton to ensure the HDF5_PLUGIN_PATH env var gets updated with the adios
install prefix
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- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
`spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
for oneapi.py
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Disable dataman by default. It pulls heavy dependencies that are
often not needed for HPC (ZMQ) and it currently does not link
with popular compilers.
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Control new options/dependencies in ADIOS2 to avoid pick-up of system
packages.
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* ADIOS2: Version `master`
Rename branch version to supported, real development branch `master`.
The old name is legacy Spack when alternative development branch
names were not yet supported.
* ADIOS: Simplify via spec Variable
use the already defined local variable `spec` to shorten
lines
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Add the python dependency and CMake hints when build with tests.
`spack install --tests=root adios2`
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