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Initial spackage for Hypar proxy app
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* damask3.0.0-alpha7
* [@spackbot] updating style on behalf of MarDiehl
Co-authored-by: MarDiehl <MarDiehl@users.noreply.github.com>
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* Add new python package
* Fix isort style issues
* Add additional dependencies
* Add additional dependencies
* Remove comments
* Add additional explicit dependencies
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* package_qgis_fix_pythonpath
* check if bindings enabled also
Co-authored-by: sbulut <sbulut@3vgeomatics.com>
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The base project name for the SEACAS project has changed from
"SEACASProj" to "SEACAS" as of @2022-10-14, so the package
needed to be updated to use the new project name when needed.
The refactor also changes several:
"-DSome_CMAKE_Option:BOOL=ON"
to
define("Some_CMAKE_Option", True)
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* v1503
* v1504
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Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
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* sundials: add v6.4.1, new ginkgo and kokkos variants, plus some fixes
* add missing kokkos/kokkos-kernels variant
* add v6.4.0
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* superlu-dist: fix rocm variant for the master branch
* simplify superlu-dist
* add mpi include to HIP_HIPCC_FLAGS
Co-authored-by: liuyangzhuan <liuyangzhuan@users.noreply.github.com>
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* Add tracy 0.9
* Add conflict for pika and tracy@0.9:
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* py-ilmbase: add dependency to py-numpy
* fix style
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Co-authored-by: sbulut <sbulut@3vgeomatics.com>
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Drop the link dependency type for the rocm packages. We don't
actually link, and that adds rpaths that conflict with the app.
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When building ParaView with a newer HDf5 than 1.10, it needs to select the 1.10 API using flags.
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* added polypolish package, comfirmed builds
* added bwa dep
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* julia: don't look for the openlibm libraries when unneeded
Cause spack to *not* check for the existence of the openlibm libraries (by adding it to the pkgs list) when ~openlibm is specified.
* [@spackbot] updating style on behalf of downloadico
Co-authored-by: downloadico <downloadico@users.noreply.github.com>
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Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
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Packages should depend on the virtual provider, pkgconfig, not on its implementations pkg-config or pkgconf.
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- the updated OpenFOAM wmake rules now allow multiple locations for
compiler flags:
* wmake/General/common/c++Opt [central]
* wmake/linux64Gcc/c++Opt [traditional]
- match both '=' and ':=' make rule lines
Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
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Changes to improve locating shared libraries on Windows, which in
turn enables the use of Clingo. This PR attempts to establish a
proper distinction between linking on Windows vs. Linux/Mac: on
Windows, linking is always done with .lib files (never .dll files).
This somewhat complicates the model since the Spec.lib method could
return libraries that were used for both linking and loading, but
since these are not always the same on Windows, it was decided to
treat Spec.libs as being for link-time libraries. Additional functions
are added to help dependents locate run-time libraries.
* Clingo is now the default concretizer on Windows
* Clingo is now the concretizer used for unit tests on Windows
* Fix a permissions issue that can occur while moving Git files during
fetching/staging
* Packages can now implement "win_add_library_dependent" to register
files/directories that include libraries that would need to link
to dependency dlls
* Packages can now implement "win_add_rpath" to register the locations
of dlls that dependents would want to load
* "Spec.libs" on Windows is updated to return link-time libraries
(i.e. .lib files, rather than .dll files)
* PackageBase.rpath on Windows is now updated to return the most-likely
locations where .dlls will be found (which is generally in the bin/
directory)
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* Enable Cuda for AMReX smoke test.
* style fix
* more style fixes
* change /... to join_path
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* Nalu-Wind: Allow for standard versions of trilinos
This will allow us to utilize custom numeric versions for trilinos in `spack-manager` while we continue to develop `nalu-wind`.
Pinging @eugeneswalker @jrood-nrel @tasmith4
* Update var/spack/repos/builtin/packages/nalu-wind/package.py
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* exago: query and use MPI compilers from spack
* exago: requires explicit location of mpi.h for nvcc
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* New MFEM version: 4.5
Add new MFEM variants: ginkgo, hiop
* mfem: small tweaks
* mfem: tweak testing script
* mfem: try to resolve issue #30483
* mfem: fix style
* mfem: tweak for Spack-built hipsparse
Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
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Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
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(#33587)
* phist: add/update conflicts with cray-libsci and/or python@3.11: for versions <1.11.2
* phist: style fix
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(#33586)
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Update `warpx` & `py-warpx` to the latest release, `22.10`.
Update `py-picmistandard` accordingly.
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py-pyspoa) and updates to others (py-scikit-build, py-ont-fast5-api) (#33541)
* Added py-medaka and dependencies
* fixed py-parasail build error
* medaka still doesn't have correct linked libdeflate
* fixed pyspoa deps
* added htslib.patch, confirmed builds and runs
* fixed style
* Update var/spack/repos/builtin/packages/py-auditwheel/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* made requested changes
* added targets for pyspoa dep
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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/home/xsdk/spack.x/lib/spack/env/oneapi/icx -DAdd_ -Dscalapack_EXPORTS -I/opt/intel/oneapi/mpi/2021.7.0/include -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o -MF CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o.d -o CMakeFiles/scalapack.dir/BLACS/SRC/dgamx2d_.c.o -c /home/xsdk/spack.x/spack-stage/spack-stage-netlib-scalapack-2.2.0-uj3jepiowz5is4hmdmjrzjltetgdr3lx/spack-src/BLACS/SRC/dgamx2d_.c
/home/xsdk/spack.x/spack-stage/spack-stage-netlib-scalapack-2.2.0-uj3jepiowz5is4hmdmjrzjltetgdr3lx/spack-src/BLACS/SRC/igsum2d_.c:154:7: error: call to undeclared function 'BI_imvcopy'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
BI_imvcopy(Mpval(m), Mpval(n), A, tlda, bp->Buff);
^
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