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2022-05-25py-numpy: add v1.22.4 (#30827)Adam J. Stewart2-1/+4
2022-05-25py-pythran: add v0.11.0 (#30829)Adam J. Stewart1-0/+4
2022-05-25openmpi: fixes for slurm and #29449 (#30299)Seth R. Johnson1-44/+19
2022-05-25Add nextflow 22.04.3 (#30855)Diego Alvarez1-0/+1
2022-05-25eagle: updating to version 1.1.3 (#30852)snehring1-3/+4
2022-05-25sed: fix recursive symlink (#30849)Seth R. Johnson1-0/+3
Use `spack build` as build dir to avoid recursive link error. ``` config.status: linking /var/folders/fy/x2xtwh1n7fn0_0q2kk29xkv9vvmbqb/T/s3j/spack-stage/spack-stage-sed-4.8-wraqsot6ofzvr3vrgusx4mj4mya5xfux/spack-src/GNUmakefile to GNUmakefile config.status: executing depfiles commands config.status: executing po-directories commands config.status: creating po/POTFILES config.status: creating po/Makefile ==> sed: Executing phase: 'build' ==> [2022-05-25-14:15:51.310333] 'make' '-j8' 'V=1' make: GNUmakefile: Too many levels of symbolic links make: stat: GNUmakefile: Too many levels of symbolic links make: *** No rule to make target `GNUmakefile'. Stop. ```
2022-05-25py-scikit-learn: add v1.1.1 (#30830)Adam J. Stewart1-0/+1
2022-05-25Pastix: new package (#30533)fpruvost1-0/+88
2022-05-25[mochi-margo] added version 0.9.10 (#30844)Matthieu Dorier1-0/+1
2022-05-25geant4: new version v11.0.2 (#30847)Ben Morgan1-0/+1
2022-05-25ccache: add missing pkgconfig dep (#30846)Harmen Stoppels1-3/+5
2022-05-25py-scipy: add v1.8.1 (#30831)Adam J. Stewart1-1/+2
2022-05-25reprimand: update homepage (#30840)Erik Schnetter1-1/+1
2022-05-25p7zip: fix %clang (#30843)Harmen Stoppels1-5/+16
2022-05-25dsfmt: set CC=cc (#30842)Harmen Stoppels1-1/+1
2022-05-25tau: add v2.31.1 (#30820)eugeneswalker1-0/+1
2022-05-25julia: support clang, set llvm NDEBUG correctly (#30800)Harmen Stoppels3-0/+64
2022-05-25mbedtls: add conflicts over inline asm trouble with clang@12: (#30801)Harmen Stoppels1-0/+4
2022-05-25[lcms] Added version 2.13.1 and URL version (#30811)Jen Herting1-0/+5
Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-05-25py-pillow-simd: mark conflicts with aarch64 (#30828)Adam J. Stewart1-0/+2
2022-05-24silo: Fix HDF5 1.13 API breakage (#30786)Chuck Atkins2-2/+44
2022-05-24Add aria2 1.36.0 (#30822)Derek Ryan Strong1-1/+2
2022-05-25Add rsync 3.2.4 (#30821)Derek Ryan Strong1-1/+2
2022-05-24[leveldb] add patch to fix check for -Wthread-safety (#30810)Matthieu Dorier2-0/+27
2022-05-24[libwebp] Added version 1.2.2 (#30814)Jen Herting1-0/+1
Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-05-24[libdeflate] Added version 1.10 (#30813)Jen Herting1-0/+1
Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-05-24[libaec] Added version 1.0.6 (#30812)Jen Herting1-0/+1
Co-authored-by: James A Zilberman <jazrc@rit.edu>
2022-05-24Allow Kokkos with OpenMPTarget backend (#30724)Daniel Arndt1-0/+9
* Allow Kokkos with OpenMPTarget backend * Restrict SYCL and OpenMPTarget to C++17 or higher * Improve C++ standard check for SYCL and OpenMPTarget * Fix indentation
2022-05-24mpich: re-enable building of the older versions (#30766)Sergey Kosukhin1-1/+7
* mpich: enable building @3.4:3.4.3 ~cuda * mpich: add dependency on mxm
2022-05-24tbl2asn: adding currently available version (#30774)snehring1-6/+9
2022-05-24New package: py-x21 (#30225)Jen Herting1-0/+66
* Py-x21 now works, needs dependencies Conflicts: var/spack/repos/rit-rc/packages/py-x21/package.py * Added dependencies to py-x21 * Making flake style check happy * [py-x21] flake8 * [py-x21] - added homepage - added placeholder description - added comment about checksums * [py-x21] added darwin support and fixed issue with python 3.7 wheel name * [py-x21] adding checksum hash * [py-x21] removed duplicate py-pynacl * [py-x21] - updated description - updated version listing to have a different version for each version of python. Also, versions dependent on sys.platform - updated url_for_version to not require post concretized information so that spack checksum works * [py-x21] isort Co-authored-by: vehrc <vehrc@rit.edu>
2022-05-24apptainer: new package (#30745)Matthias Wolf3-14/+77
2022-05-24vdt: add preload variant (#30030)iarspider1-0/+5
2022-05-24libfabric has needed rdma-core for efa since 1.10.0 (#30798)Evan Bollig1-0/+1
2022-05-24petsc: update rocrand location wrt rocm@5.1.0 (#30790)Satish Balay1-1/+5
rocm-5.1.0 removed librocrand.so from ROCM_DIR/rocrand/lib location (but includes are still at this location) /opt/rocm-5.0.2/lib/librocrand.so /opt/rocm-5.0.2/rocrand/lib/librocrand.so /opt/rocm-5.1.0/lib/librocrand.so drwxr-xr-x 2 root root 617 Mar 8 08:20 /opt/rocm-5.0.2/rocrand/include drwxr-xr-x 2 root root 617 Mar 31 09:48 /opt/rocm-5.1.0/rocrand/include
2022-05-24su2: add v7.3.1 (#30794)Mr-Timn1-0/+3
2022-05-24trilinos: add adelus, aprepro and teuchos variants (#28935)Paul Wolfenbarger1-0/+4
2022-05-24gplates: add v2.3.0 (#30676)Adam J. Stewart1-30/+38
2022-05-23Revert "Added cloud_pipline for E4S on Amazon Linux (#29522)" (#30796)Scott Wittenburg1-7/+6
This reverts commit 07e9c0695af09bbf5d1ebe51bb6f2b34eb88a3df.
2022-05-23Bugfix hwloc find cuda (#30788)Brian Van Essen1-0/+10
* Added autotools configure flags to ensure that hwloc finds the correct version of CUDA that it was concretized against, rather than the first one that package config finds. * Added support for finding the correct version of ROCm libraries. Fixed Flake8. * Fixed guard on finding ROCm library
2022-05-23[py-h2] added version 3.2.0 and 4.1.0 (#29804)Jen Herting1-4/+9
* [py-h2] py-wheel is implied by PythonPackage * [py-h2] python dependencies should be type=('build', 'run') * [py-h2] fixed dependencies for py-h2@4.0.0 * [py-h2] added version 3.2.0 * [py-h2] added version 4.1.0 * [py-h2] Older version requires py-enum34 for older versions of python
2022-05-23Added cloud_pipline for E4S on Amazon Linux (#29522)Evan Bollig1-6/+7
Add two new cloud pipelines for E4S on Amazon Linux, include arm and x86 (v3 + v4) stacks. Notes: - Updated mpark-variant to remove conflict that no longer exists in Amazon Linux - Which command on Amazon Linux prefixes on all results when padded_length is too high. In this case, padded_length<=503 works as expected. Chose conservative length of 384.
2022-05-23usearch: adding in new version, updating checksums (#30776)snehring1-4/+6
2022-05-23genemark-et: updating to 4.69 (#30793)snehring1-0/+1
2022-05-23plumed: add versions up to v2.8.0 (#30787)Maciej Wójcik2-21/+42
2022-05-23abseil-cpp: add v20211102 (#30785)marcus-elia1-1/+2
2022-05-23xsdk-examples: add v0.3.0 (#30770)Cody Balos3-30/+89
Co-authored-by: Satish Balay <balay@mcs.anl.gov> Co-authored-by: Veselin Dobrev <dobrev@llnl.gov>
2022-05-23py-rnc2rng: fix 2.6.5 and add 2.6.6 (#30784)Manuela Kuhn1-0/+3
2022-05-23hdf5-vol-async: update new version, tests, and runtime envs (#30713)Jean Luca Bez1-5/+21
* Update h5bench maintainers and versions * Include version 1.1 for h5bench * Correct release hash and set default version * Update .tar.gz version * Include new version and update runtime * Update year * Update package.py * Update package.py
2022-05-23llvm: make "omp_as_runtime" variant conditional (#30782)Massimiliano Culpo1-4/+1
fixes #30700 To avoid clingo adding penalties for not using the default value for a variant, it's better to model the variant as conditional where possible.