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2016-12-01Merge pull request #2364 from davydden/ips_mklGregory Lee1-1/+1
intel-parallel-studio: fix location of MKL libs
2016-11-30Update R&friends to use our X11 libs (#2053)George Hartzell3-0/+17
* Update R&friends to use our X11 libs Add `depends_on()`'s for R, Cairo, and Tk so that they use the Spack X bits. * Conditionalize X stuff on variant Another step towards hooking up the X stuff. There's still discussion happening on the issue, but this is better than the 'everything must build with X' state that it was in.
2016-11-29New package - r-irkernel (#2434)Javier2-0/+102
* New package - r-irkernel * New package - r-pbdzmq, dependency of r-irkernel * Adding blank line expected by flake8 tests
2016-11-29Added the '+debug' and '+except' variants to the 'tetgen' package. (#2370)Joseph Ciurej2-5/+78
Fixed a bug that was causing memory errors after asserts in 'tetgen@1.5.0'.
2016-11-29New package - r-rbokeh (#2436)Javier1-0/+55
2016-11-29jemalloc: Update to 4.3.1 (#2435)Erik Schnetter1-0/+1
This corrects a severe problem (segfault) on macos Sierra.
2016-11-29add support for installing the development (master) version of PETSc (#2431)Barry Smith2-0/+47
Funded-by: IDEAS Project: IDEAS/xSDK Time: .3 hours x
2016-11-28Fix building latest version of flex (#2401)Adam J. Stewart7-57/+96
* Fix building latest version of flex * Don't need when clause * Remove perl deps, shebang too long
2016-11-28add missing zeromq dependency to r-rzmq (#2425)hegner1-0/+2
2016-11-28New package - r-pryr (#2424)Javier1-0/+46
2016-11-28New package - r-uuid (#2423)Javier1-0/+43
2016-11-28New package - r-rmarkdown (#2422)Javier1-0/+50
2016-11-28New package - r-repr (#2421)Javier1-0/+43
2016-11-28hdf5: fix for lib64 installation (#2349)Denis Davydov1-1/+3
2016-11-26scotch: fix compilation on macOS (#2326)Denis Davydov1-9/+26
2016-11-26New package - r-rinside (#2416)Javier1-0/+57
* New package - r-rinside * Changes to pass flake8 test
2016-11-26New package - r-rsnns (#2415)Javier1-0/+50
2016-11-26New package - r-rzmq (#2414)Javier1-0/+42
* New package - r-rzmq * Adding homepage
2016-11-26New package - r-irdisplay (#2413)Javier1-0/+45
2016-11-26New package - r-hexbin (#2412)Javier1-0/+45
2016-11-24netcdf: multiple improvements (#2377)Andrey Prokopenko1-15/+43
- Added 'dap' and 'cdmremote' variants This is based on work in #2324 with the following motivation: Turn off DAP support by deafult. DAP requires curl, which has issues with circular dependencies. For 95% of NetCDF users that do not need DAP, turning it off avoides this rats nest of problems. - Added 'parallel-netcdf' variant To support work with parallel-netcdf - Added 'shared' and 'static' build separation
2016-11-24Bugfix/update go packages (#2369)George Hartzell4-8/+49
* Update go-bootstrap package The last C based Go src tree was the 1.4 series. For a while they were cutting new releases so that people could bootstrap from a C only system. Now they're recommending that you either use the release-1.4 branch or that you use a date-stamped tarball that they'll produce on an as-needed basis. There are several issues that keep 1.4.2 from building on a CentOS 7 system. I've switched to the date based tarball. The cgo bits were also mis-behaving, but they're not needed for the bootstrapping task so I've set an environment variable that disables them. Details [on the install-from-source page](https://golang.org/doc/install/source#go14) and these issues: - https://github.com/golang/go/issues/17545 - https://github.com/golang/go/issues/16352. * Update go package Switched from pulling from the git repository to using the source tarballs and added digest values. Added support for 1.7.3, continued supporting 1.6.2, including patches for a couple of problems (details in [17545](https://github.com/golang/go/issues/17545) and [17986](https://github.com/golang/go/issues/17986). Dropped support for 1.5.4 and 1.4.2 because they no longer pass their tests and the patches above to not apply.
2016-11-24Updated version - r-lattice (#2410)Javier1-2/+2
2016-11-24New package - r-testit (#2409)Javier1-0/+43
2016-11-24New package - r-highr (#2408)Javier1-0/+44
2016-11-24New package - r-knitr (#2407)Javier1-0/+52
2016-11-24New package - r-gistr (#2406)Javier1-0/+55
2016-11-24New package - r-formatr (#2405)Javier1-0/+51
* New package - r-formatr * Block comment should start with '# '
2016-11-24New package - r-evaluate (#2404)Javier1-0/+46
2016-11-23added qt variants for pyqt to build (#2389)Gregory Lee2-2/+3
2016-11-23Updating SuperLU package file with ability to build version 4.3. (#2390)Jon Rood1-3/+74
* Updating SuperLU package file with ability to build version 4.3 (before they added cmake) with external blas or internal blas, and added capability to build the latest version 5.2.1 (with cmake) with internal blas. * Updating SuperLU package file with suggested changes, i.e. reorganizing installation methods based on version, adding cmake dependency when necessary, removing any use of internal blas, and also adding fpic variant. * Fixing flake8 failures.
2016-11-23New package - r-catools (#2394)Javier1-0/+47
* New package - r-catools * Splitting lines to pass flake8 travis test
2016-11-23New package - r-partykit (#2395)Javier1-0/+52
* New package - r-partykit * Splitting lines to pass flake8 travis test
2016-11-23New package - r-formula (#2396)Javier1-0/+43
2016-11-23New package - r-deoptim (#2397)Javier1-0/+43
2016-11-23New package - r-c50 (#2393)Javier2-0/+86
* Adding R library r-bitops * New package - r-c50
2016-11-23New package yaml-cpp (#2399)Jon Rood1-0/+49
* Adding new package for yaml-cpp. * Removing gcc specific c++11 flag. Adding fpic variant. Fixing formatting.
2016-11-22Update flex package url's and versions (#2384)Matthew Scott Krafczyk1-12/+21
* Update flex package url's and versions The old sourceforge page for flex is now defunct. While version 2.6.0 still downloads fine, later versions are no longer hosted there. Development continues on github. I've adjusted urls to point to this new location. In addition, from 2.6.0 onwards, a new naming scheme for releases seems to have been adopted. I've created a url_for_version function to sort this out. * Change flex to an AutotoolsPackage Also move the url_for_version function to the end of the package definition. * Implement the autoreconf function for flex
2016-11-21Merge pull request #2291 from ax3l/topic-icetbecker331-0/+47
Packages: Add IceT
2016-11-21llvm-lld: minor misprint fixAndrey Prokopenko1-1/+1
2016-11-18intel-parallel-studio: fix location of MKL libsGlenn Johnson1-1/+1
2016-11-16python: symlink lib64/python2.7/lib-dynload/ to lib/python2.7/lib-dynload/ ↵Denis Davydov1-0/+19
(#2295)
2016-11-14Merge pull request #1547 from citibeth/efischer/160816-PyPathspecbecker331-0/+41
py-pathspec: New package
2016-11-13Add Package: IceTAxel Huebl1-0/+47
Adds the IceT compositing library from Sandia/Kitware. Most default functionality needed for image compositing is added, OpenGL acceleration for very large displays is disabled. Downstream usage: most VTK based software which supports parallel image compositing, such as VisIt, Paraview and in our use-case [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac).
2016-11-12Force the recipe for Lua to use the spack compiler. (#2299)Kelly Thompson1-2/+4
* Force the recipe for Lua to use the spack compiler. I'm not sure how the old recipe worked for anyone. The Lua Makefiles set `CC=gcc` and for my spack environment the first `gcc` found in my `PATH` is `$SPACK_ROOT/lib/spack/env/gcc`, which is a directory. This caused the build to fail. My change drops the `-std=gnu99`, but this option doesn't appear to be required for a sucessful build. * Preserve the '-std=gnu99' compile option.
2016-11-12Simplify the CMake build to make it more robust. (#2325)Elizabeth Fischer1-1/+1
* Simplify the CMake build to make it more robust. * ncurses on by default.
2016-11-12Remove automake dep in libelf. (#2328)Todd Gamblin1-1/+0
2016-11-10Add VizGlow package (#2298)Adam J. Stewart1-0/+58
2016-11-10Packages: Add Jansson (#2287)Axel Huebl1-0/+37
This adds the built recipe for [Jansson](http://www.digip.org/jansson/), *a C library for encoding, decoding and manipulating JSON data.* GitHub Repo: https://github.com/akheron/jansson Downstream Usage: In [ISAAC](https://github.com/ComputationalRadiationPhysics/isaac) which is an *in situ visualization library* based on [alpaka](https://github.com/ComputationalRadiationPhysics/alpaka) and/or CUDA which is used in [PIConGPU](https://github.com/ComputationalRadiationPhysics/picongpu).
2016-11-10tree: use Spack's compiler and fix installation on macOS (#2293)Denis Davydov1-5/+22
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