Age | Commit message (Collapse) | Author | Files | Lines |
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Ref espressopp/espressopp#161
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* added albacore package as well as dependency py-ont-fast5-api
* added py-cutadapt and dependency py-xopen
* made more changes to albacore and cutadapt as well as dependencies
* made changes again per @adamjstewart
* fixed by python n00b errors i think
* fixed?
* tw=79
* made changes to py-ont-fast5-api ont-albacore
* removed bad characters
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* Included LIBXSMM 1.8 into the list of available versions.
* LIBXSMM 1.8.1
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* py-cdat-lite: a python package for managing and analysing climate science data
* py-cdat-lite: depends on py-numpy
* py-cdat-lite: flake8 compliance
* py-cdat-lite: provide a generic URL where multiple versions are listed
* py-cdat-lite: restrict python versions; python required at run-time
* py-cdat-lite: use URL under pypi.io for consistency with other packages
* py-cdat-lite: add run-time dependency on py-numpy
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Add pdt dependency to scorep
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* Initial attempt at flann packaging.
Python2 somehow works. Python3 does not. Still debugging their
obscure setup.py configuration.
* Flann good enough. Python3 broken but close.
Flake8 checks in place. Unsure about CMAKE_BUILD_TYPE and default
spack behavior.
* spack uses RelWithDebInfo as default build type.
* builds py2/3, but direct site-packages install
* prefix working, empty python install dir
* flann package +python installs correctly
* str format {0} instead of {}
* potential doctest fix
* consistency of build env with PythonPackage
* fix python again, test deptype todo, build type
* potentially enable matlab, untested
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Signed-off-by: Howard Pritchard <howardp@lanl.gov>
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* cosmomc: Enable Python bindings
* cosmomc: Make python dependency optional
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* hdf5: Correct spelling
* hdf5: avoid trailing spaces
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* highfive: New package; this is a C++ wrapper for the HDF5 library
The C++ wrapper that is shipped with the HDF5 library has several shortcomings. The highfive library seems to avoid these.
* highfive: Make MPI variant default to true
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* Add latest version of PGI compilers
* Prepend, don't overwrite
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* version updates, remote switch
* trim versions to original and most recent
* proper url discovered and tested
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* enable cuda support for suite-sparse
* do not use spec.satisfies
* cuda restructure, give clearer comment of why
* str format compatibility
* flake8 checks
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* Fix newline character in GCC package
* Remove the newline completely
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* adding 0.5.1 and variant for uint8 bit stream word type
* Revisions as per davydden
* fixing style (flake8) issues
* - switched to derive from MakefilePackage
- fixed typo in variant check
- Confirmed installs correctly with bswtuint8 variant
* added build method; changed zfp_incdir to incdir
* * Adding uber fastmath package to support 'spack install fastmath'
* Adding dims variant boxlib to control compile-time spatial dimension count
* Explicitly disabling many parts of moab to get lib to build. Don't need tools yet.
* Add logic to spack/setup-env to not refer to $SYS_TYPE if its not defined.
* adding mesquite package
* * Added Chombo (still working on Fortran name mangling)
* Made mesquite depend on mpi
* Fixed use of boxlib's dims numerical variant
* adding PUMI
* flake8 compliance
* adding phasta
* fixing flake8 issues
* undue $SYS_TYPE protection change
* fixing install step for fastmath uber package; resolve issues requested by adamjstewart in PR
* revisions as per adamjstewart
* re-enabling trilinos and phasta dependencies
* all changes requested modulu values= and assert statement
* fixing cmake_args usage in pumi; fixing lib installs for chombo
* first pass at numerical variant
* fixing dims variant as per @adamjstewart
* fixing func/var name collision
* fixing means of disabling -Werror
* fix name collision for cmake_args var/func
* fixing chombo homepage/url; make FASTMath use chombo#3.2; remove extraneous comment about boxlib dim
* remove dummy fastmath package; switch to @BarrySmith soln for install of dummy bundle
* fix flake8 import os issue
* remove extraneous comment
* adding url for fastmath scidac site
* final fixes as per @adamjstewart
* adding 1 dims option for boxlib
* switching make(all) to gmake(all)
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Make openmpi handle bad ibv_devices return statuses without bailing out completely.
See #4162 for background.
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Otherwise, the install can fail if the system-provided `tic` binary is too old.
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Also use a Spack-provided GoogleTest.
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Added DFLAGS to the `make.inc` file being written.
These macros are also added to the language specific variables
like CFLAGS, CXXFLAGS and FCFLAGS. Changed `spec.satisfies('foo')`
with `'foo' in spec` in `intel-mkl`, see #4135. Added a basic
build interface to `intel-mpi`.
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* Add GCC 7
* Allow users to build subset of GCC compilers with multi-value variant.
* Add comment explaining what 'all' actually means
* More specific golang support
* Only require Zip when building Java
* Comment out provide directives that don't currently work
* Add Ada support
* Use conflicts directive
* Fix joining of languages
* Need special flag to build jit
* Explicitly declare GNAT download extension
* Import tty, update lib64 to lib
* BRIG and Go are not supported on macOS
* Simplify formatting and imports
* JIT patch required for newer versions as well
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* qt: add 5.8.0 which builds on Sierra with clang 8.1.0
* enable parallel build, add freetype dependency
* minor
* minor
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Remove python dependency for libxcb and xcbproto
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* adding paramiko and missing dependencies, setup to work with #2548
* adding other deps for paramiko
* fix flake8 errors
* removed spurious add
* address suggestion for proper dependencies
* fix cryptography deps
* remove FIXME comments and commented depends lines
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* Add list_url to mpfr
* Switch to download directly from GNU
* http -> https
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* Updating bamtools to include a dependency for zlib.
In a standard compile, bamtools will fail if zlib headers are not installed on the target machine. In order to maintain compatibility with all systems -- and since zlib is included already as a dependency for cmake -- this patch adds zlib as a link dependency for the bamtools package.
* Modified cmake rpath include.
Bamtools has a non-standard library location, so we need to append $prefix/lib/bamtools to the rpath. Not sure there's a better way to do this...
* Fixing syntax error in package.py
Fixed a non-terminated parenthesis on line 46.
* Updated bamtools to be a CMakePackage
Removed extraneous code, and altered the package to extend cmake_args
including the non-standard library location.
* UpRemoving cmake dependency and removing blank line from end of file
* Updates to cmake_args.
Removed the duplicate definition of std_cmake_args in favor of simply overriding the CMAKE_INSTALL_RPATH variable that is provided. This should allow the package to be linked correctly to itself.
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* Fix -include issue with intel and pgi in zlib
MERGE CANDIDATE
* Patch zlib to compiler with the cray compiler suite.
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What the user wants, the user gets....
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python+tk will not build because it depends (indirectly) on python~tk
via libxcb. There are efforts to allow multiple instances of a package
to concretize together but they are ongoing so in the meantime this
comments out the dependencies and adds TODOs
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* Fix ordering of versions (proper!)
* Add url/digest for jdk@8u73
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