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2021-04-07lbann: remove the specification of the high performance linkers (#22818)Brian Van Essen1-9/+0
Allow the user to put them on the command line.
2021-04-07py-scikit-image: add new version (#22363)archxlith1-3/+7
* [py-scikit-image] Added py-setuptools back into depends_on. Otherwise it is putting skimage in scikit_image-version-pyX.Y-arch.egg dir under site-packages * [py-scikit-image] Added latest version * [py-scikit-image] Added py-numpy version dependency when package version greater than 0.18 * [py-scikit-image] Updates to python dependency * Fix typo Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-04-06py-statsmodels: add v0.12.2 (#22620)Adam J. Stewart1-6/+8
2021-04-06valgrind: add version 3.17.0 (#22752)Robert Mijakovic1-0/+1
2021-04-06New package: Oracle instant client (#22797)iarspider1-0/+94
2021-04-06tcpdump: add version 4.99.0 (#22803)darmac1-3/+5
2021-04-06environment-modules: add version 4.7.1 (#22811)Xavier Delaruelle1-1/+2
2021-04-06salmon: New patch (#22686)Desmond Orton1-1/+6
2021-04-06new package: py-python-box (#22814)Glenn Johnson1-0/+31
2021-04-06Squashfuse: Enable or disable static and shared libs, and allow min size ↵Harmen Stoppels1-4/+20
builds too, useful for appimages (#22669) * Enable or disable static and shared libs, and allow min size builds too, useful for appimages * Fix master version
2021-04-06New package: py-ilmbase (#22783)Jen Herting1-0/+31
* [py-ilmbase] created template * [py-ilmbase] added dependencies and configuration options as necessary * [py-ilmbase] added homepage and description removed fixmes * [py-ilmbase] shortened lines for flake8
2021-04-06paraview: adds new cuda target, ampere (#22750)Robert Mijakovic1-1/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-04-06m4: force path where to look for autoconf (#22765)Seth R. Johnson1-0/+9
Uses the M4 environment variable
2021-04-06xfsprogs: add 5.11.0 and fix build with newer versions of gcc (#22665)Michael Kuhn1-3/+11
xfsdump depends on an older version of xfsprogs that does not build with recent versions of gcc.
2021-04-06hipsycl: add v0.9.1 which partially implements SYCL 2020 standard (#22770)ravil-mobile1-1/+11
Co-authored-by: ravil <ravil.dorozhinskii@tum.de>
2021-04-06stat: deprecate versions prior to 4.0 (#22650)Gregory Lee1-6/+11
2021-04-06cdo: help libtool to find the correct paths to libraries (#22670)Sergey Kosukhin1-24/+61
- Add a maintainer - Help libtool to find the correct paths to libraries - Handle externals from system directories - Enable eccodes for older versions
2021-04-06dotnet-core-sdk: add v5.0.4 and v3.1.13. (#22217)Gilles Grospellier1-0/+8
2021-04-06itk: add v5.1.2 (#22655)Glenn Johnson1-0/+1
2021-04-06libtree: add v1.2.1 (#22795)Harmen Stoppels1-0/+1
2021-04-06likwid: add v5.1.1 (#22672)Thomas Gruber1-0/+1
2021-04-06qwt: add v6.1.6 (#22713)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-04-06rdma-core: add v34.0 (#22710)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-04-06libpcap: add v1.10.0, v1.9.1 (#22741)darmac1-1/+3
2021-04-06capnproto: add v0.8.0 (#22743)darmac1-0/+1
2021-04-06spark: add v3.1.1, v3.0.2, v3.0.2, v2.4.7 (#22753)Robert Mijakovic1-0/+4
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-04-06anaconda3: add v2020.11 (#22576)Tiziano Müller1-0/+1
2021-04-06r-assertive-base: new package (#22780)Jen Herting1-0/+24
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-06fltk: add explicit dependency on gl and a variant to activate it (#22761)Amiya Maji1-0/+9
* The fltk package can build libraries with opengl support. By default, the configure script looks for opengl headers in the sytem include paths. If 'devel' packages have not been installed on the system it omits the 'ftlk_gl.so' library. This can break packages like 'octave' which expects 'fltk' to have opengl support and looks for the library 'fltk_gl'. Make opengl support explicit in fltk by adding a dependency on 'gl' and adding a new variant of the same name 'gl' (default On). With these modifications 'fltk_gl' and 'octave' build successfully on CentOS8. The default behavior is to always enable opengl. https://www.fltk.org/doc-1.3/intro.html
2021-04-06seacas: add v2021-04-05 (#22784)Greg Sjaardema1-0/+1
2021-04-06openmpi: allow to build with ^slurm ~pmi for >3.0.0 with PMIx (#22086)Andrew W Elble1-2/+6
2021-04-06hydrogen, lbann: forward the CXXFLAGS to the HIP_HIPCC_FLAGS variable. (#22744)Brian Van Essen2-2/+5
2021-04-06zstd: add v1.4.9, switch to cmake to configure more easily (#22668)Harmen Stoppels1-37/+33
Also: - Add variants to control the build - Add a maintainer - Add master version
2021-04-06hdf5: patch for BOZ literal constant error when compiled with GCC 10. (#22509)Robert Mijakovic2-0/+17
2021-04-06doxygen: add version restriction (#22773)Seth R. Johnson1-1/+2
This triggered on my mac because clingo seems to have bootstrapped a very old version distributed by apple.
2021-04-06stress-ng: new package (#22777)Andrew W Elble1-0/+46
2021-04-06Add patch for latest hwloc@:1 to locate ncurses (#22776)Harmen Stoppels2-2/+36
* Add patch for latest hwloc@:1 to locate ncurses This way we don't have to depend on ncurses~termlib, which may run into issues when another package explicitly depends on ncurses+termlib * Move termcap to the back, cause it's a system symlink on macos and isn't set by spack
2021-04-06gpu-burn: add v1.1 and "master" (#22778)Andrew W Elble2-43/+18
2021-04-06rnaquast: add new package (#22648)Desmond Orton1-0/+37
2021-04-06trf: add v4.09.1 and other updates (#22782)Glenn Johnson1-5/+26
- add new version, 4.09.1 - use github url - convert to autotools package - deprecate version 4.07b: This version requires manual download and is a binary only installation.
2021-04-06repeatmasker: update and fix package (#22785)Glenn Johnson1-12/+23
- version 4.0.7 was not building - version 4.0.9 was not setting search correctly due to an extra "return" in config - added version 4.1.2-p1 - new version needs py-h5py - new version does not need utf8 patch - url format changed
2021-04-06hmmer: add v3.3.2 (#22787)Glenn Johnson1-1/+2
2021-04-06exabayes: add v1.5.1 (#22789)Andrew W Elble1-3/+2
2021-04-06libfabric: add v1.12.1 (#22790)Axel Huebl1-0/+1
Add latest patch release to fix build issues with unconditional usage of `infiniband/ib.h`
2021-04-04qt: backport build issue fix on 5.14 due to isystem (#22772)Valentin Volkl2-0/+108
2021-04-03rankstr: add v0.0.3 (#22763)Cameron Stanavige1-1/+2
2021-04-02New package: r-anytime (#22624)Jen Herting1-0/+25
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-02New package: r-pheatmap (#22617)Jen Herting1-0/+24
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-02New package: r-amelia (#22623)Jen Herting1-0/+27
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-02New package py-gffutils (#22552)Desmond Orton1-0/+30
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