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2016-10-06Feature Proposal : Make All Python Extensions User Configuration Independent ↵Joseph Ciurej86-94/+90
(#1435) * Updated all Python extension packages to use 'setup_py' on install. * Fixed a few minor style issues with the updated Python packages.
2016-10-06Update gmp: fixed an issue with intel compiler. (#1898)Sergey Kosukhin1-2/+8
2016-10-06Updated nettle to have m4 as an immediate dependency (#1946)Jay1-0/+1
* Updated nettle to have m4 as an immediate dependency to match new PATH construction logic which only includes immediate dependencies. * Update package.py
2016-10-06Sqlite ppc64le configure build guess fix (#1684)James Wynne III1-1/+10
* Added check for ppc64le because configure cant guess the build type for rhel on ppc64le Expand/clarify description of dependency types Refactored getting the arch so that its less verbose * Fixed flake8 issues
2016-10-06Update pixman: mmx is disabled only for MacOS. (#1896)Sergey Kosukhin1-3/+9
2016-10-06Update libtiff: updated homepage and fetch urls. (#1895)Sergey Kosukhin1-2/+3
* Update libtiff: updated homepage and fetch urls. * Update libtiff: new version 4.0.6.
2016-10-06cgal: build out of source. (#1918)Elizabeth Fischer1-4/+4
* cgal: build out of source. * Simplify cmake out-of-source.
2016-10-06add python options to vtk package (#1931)Jeffrey Salmond1-1/+5
2016-10-05mumps: Add alternate download location (in comments) (#1919)Elizabeth Fischer1-0/+2
2016-10-05Add package for CONVERGE CFD (#1905)Adam J. Stewart1-0/+69
2016-10-05Add latest versions, resolve variant resolution bug (#1909)Adam J. Stewart3-8/+14
2016-10-05everytrace: New package (#1543)Elizabeth Fischer2-0/+98
* everytrace: New package Everytrace ensures that stack trace is obtained every time a program exits, for whatever reason. * everytrace: Change CMake to build dependency * Renamed to everytrace-example, flake8 and copyright issues. * flake8 * Missing type=build
2016-10-05Add missing dependencies for Flake8 (#1883)Adam J. Stewart9-26/+364
* Warn user if flake8 can't find setuptools * Add missing dependencies of flake8 * Updates to py-autopep8, make packages activateable * Check for presence of setuptools for Sphinx too * Fix bug in order of commands
2016-10-05PNGwriter, libSplash: Add `master` version (#1744)Axel Huebl2-0/+8
* PNGwriter, libSplash: Add `master` version * PNGwriter, libSplash: Add `dev` versions Can be used for now, `develop` is currently discouraged.
2016-10-05boost: set 1.61 as preffered until 1.62 is fixed (#1908)Denis Davydov1-2/+2
2016-10-04Packages for Darshan I/O performance characterization tool from ANL (#1900)Pramod Kumbhar2-0/+106
2016-10-04Update documentation URL after switch to readthedocs (#1901)Adam J. Stewart8-15/+15
2016-10-04A set of tools used in climate modeling and numerical weather prediction. ↵Sergey Kosukhin8-19/+367
(#1317) * Update grib-api: switched to cmake building system. * Update harfbuzz: added pkg-config dependency. * Update pango: added pkg-config dependency. * Add libemos package. * Add Magics (from ECMWF) package. * Revert "Variant for building cdo without mpi (#1638)": CDO does not use MPI. This reverts commit 079d063c6d94be84974f1ddd6eb880e902c95b4a. * Update CDO package: full featured implementation. * Update magics: added python as build dependency. * Update cdo: added disabling configuration options.
2016-10-04Adds mpip package (#1886)Ivo Jimenez1-0/+44
2016-10-04Adds lulesh package (#1887)Ivo Jimenez2-0/+115
2016-10-04Spack package for HPCToolkit (#1892)Pramod Kumbhar2-0/+94
* Spack package for HPCToolkit (performance analysis tool) * Correction for PR comments, make flake8 happy * update note / comments
2016-10-03cp2k : added support for libint, fixed compilation issues on elpa (#1889)Massimiliano Culpo3-5/+22
2016-10-02gcc: fix darwin dispatch/object.h header issue (#1518)Geoffrey Oxberry1-0/+14
Fixes #1203. Apple ships headers in Yosemite (and possibly earlier) that are gcc-incompatible, but compile fine with clang. The fix is to copy the offending system header from /usr/include/${REST_OF_HEADER_PATH} to ${GCC_PREFIX}/include/${REST_OF_HEADER_PATH} and replace the non-gcc- compatible features with gcc-compatible equivalents. See https://github.com/hashdist/hashstack/pull/771/files for inspiration, and http://hamelot.io/programming/osx-gcc-dispatch_block_t-has-not-been-declared-invalid-typedef/ for a description of the header issue.
2016-10-02Adding latest version of fenics (#1528)Nicolas Richart3-11/+44
* Adding last version of fenics and making trilinos not ambiguous on hdf5 * forcing fenics to ignore hdf5 cxx * Adding deptypes and correcting the hdf5 patch * flake8 corrections * cleaning some useless code
2016-10-02Provide newer versions of llvm (3.8.1, 3.9.0) (#1765)Kelly Thompson1-61/+91
* Provide new versions of llvm. + Provide file list and md5 hashes for 3.8.1 and 3.9.0. + Clean up indentation for the 'releases' data structure to improve consistency. * Adding a block of code to the 'resources' structure for cfe. * Merge cfe and clang resources into single entity.
2016-10-02Added hadoop, spark, and variant spark+hadoop (#1833)Alfredo Adolfo Gimenez2-0/+128
* Added hadoop, spark, and variant spark+hadoop * Docstrings, dependency types, urls, copyright * Flake8 fixes, link dependency for hadoop * Build type for spark, env problem setting JAVA_HOME
2016-10-02git: Don't link against -lrt on Darwin (#1877)Erik Schnetter1-0/+4
There is no librt on Darwin, and it's not necessary either.
2016-10-02Update PAPI to 5.5.0 (#1878)Erik Schnetter1-0/+1
2016-10-02Update tmux to 2.3.0 (#1879)Erik Schnetter1-2/+3
2016-10-02New package: libquo (#1880)Kelly Thompson1-0/+68
* New package: libquo libquo is a high-level, easy to use programming interface tailored specifically for MPI/MPI+X codes that may benefit from evolving process binding policies during their execution. QUO allows for arbitrary process binding policies to be enacted and reverted during the execution of an MPI/MPI+X application as different computational phases are entered and exited, respectively. https://github.com/losalamos/libquo * Remove use of 'which' and fix style non-conformance.
2016-10-02Add boost 1.62.0 (#1882)Bruno Turcksin1-0/+1
2016-10-02Added bash-completion package (#951)Jean-Paul Pelteret1-0/+64
2016-09-30pdt url change to download full installer tarball (#1881)Pramod Kumbhar1-6/+7
2016-09-29Add cube variant for building GUI component with qt, parallel built ↵Pramod Kumbhar1-4/+9
supported (#1525)
2016-09-29updated to latest available package and fixed installation issue (old ↵Pramod Kumbhar1-2/+8
packages are no longer available for download) (#1523)
2016-09-29added libxstream (#1454)Mitchell Devlin1-0/+50
2016-09-29Add libint package (#1264)Adam J. Stewart3-5/+127
* Add libint package * Add Intel optimization flags recommended by CP2K * Add new version and Intel compiler optimization flags for libxc * Add older version of libint * Libint depends on GMP C++ library
2016-09-28Library for manipulating grib1 and grib2 files (#1736)Robert D. French1-0/+50
Pro tips from @adamjstewart: * line too long in package description * name it grib-api instead of grib_api * depend on netcdf without reference to unnecessary constraints
2016-09-28py-pil: Protect against building with Python3. (#1868)Elizabeth Fischer1-0/+3
* py-pil: Does not build with Python3. * Set py-pillow to be the default pil provider * Update package.py * Change to comments requested by adamjstewart * Remove version constraint from extends(), avoid a Spack bug.
2016-09-28Update Qthreads to 1.11 (#1863)Erik Schnetter1-2/+3
2016-09-28Fixes #1860. Subversion builds sequentially due to race.Todd Gamblin1-0/+3
2016-09-28vim8 is out! (#1753)Robert D. French1-0/+3
* depends on ncurses for 8.0 or higher
2016-09-28Tell Mercurial where to find CA certs (#1873)Adam J. Stewart1-5/+30
2016-09-27Various updates to scipy and numpy (#1856)Adam J. Stewart2-4/+14
2016-09-27Update cdo to 1.7.2 (#1858)Michael Kuhn1-2/+2
2016-09-26Make PETSc build on Darwin (#1835)Erik Schnetter1-4/+7
Don't set cpp when building on Darwin.
2016-09-26Update OpenSSL (#1853)Erik Schnetter1-0/+1
2016-09-26some fixes to blas/lapack usage in packages (#1852)Denis Davydov12-43/+29
* atlas: fix unit test * openblas: remove symlinks; use lapack_libs.ld_flags in the test * mkl: fix openmp variant of blas/lapack libs * intel-parallel-studio: fix openmp variant of blas/lapack libs * netlib-scalapack: fix blas/lapack for multilib case (e.g. mkl) * arpack-ng: fix blas/lapack for multilib case (e.g. mkl) * petsc: explicitly specify blas/lapack * minor * cantera: fix blas/lapack usage * ipopt: fix blas/lapack usage * netlib-lapack: fix external blas usage * mfem: fix lapack/blas usage * superlu-mt: fix blas usage * flake8 fixes
2016-09-23Fix doc bugs, widen columns in the package listTodd Gamblin1-1/+1
2016-09-23a few package used in HEP including ROOT6Patrick Gartung10-0/+607
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