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2018-08-27dyninst: add dependency on libiberty (#8806)Sasha Nícolas1-0/+1
* Adding dependency of libiberty to Dyninst package configuration. * Now it depends on libiberty package and not binutils.
2018-08-26Add line in trilinos/stk configuration to enable stk_ngp package. (#9082)Alan Williams1-0/+1
The Trilinos/stk configuration is pretty Nalu specific right now (and is acknowledged as such in a comment in package.py), and this commit enables a module that Nalu will be needing.
2018-08-26r-goseq: new package (#8939)Levi Baber1-0/+43
* r-goseq: new package * r-goseq: git not url * r-goseq: adding packages needed at runtime * r-goseq: package type * r-goseq: dep types * r-goseq: one more
2018-08-26braker: add new version 2.1.0 (#8946)lingnanyuan1-3/+5
* braker: add new version 2.1.0 * Set verison in descending order. * Update URL. * url * braker: change url format.
2018-08-26patch for OF.com@18.06 to correctly find KAHIP (#8982)TZ2-0/+18
- OpenFOAM-v1806/wmake/scripts/have_kahip must check $KAHIP_ARCH_PATH instead of $METIS_ARCH_PATH to detect the KAHIB library - use a local patch file until the issue is hopefully fixed upstream
2018-08-25Update to latest version of pytest and dependencies (#9087)Adam J. Stewart13-35/+110
* Update to latest version of pytest and dependencies * Fix bug in installation tests
2018-08-25bugfix: 'submodules' attribute should imply git fetchTodd Gamblin1-0/+1
- 'submodules' wasn't properly declared as an optional attribute for git fetcher - add it and add a test.
2018-08-24new package: GSL - C++ Guideline Support Library (#9091)Hadrien G1-0/+51
Since "GSL" is a highly overloaded acronym, the package name is "cppgsl".
2018-08-24Update the pocl package (#9090)Hadrien G1-7/+20
* Update the pocl package * Use url_for_version * Clarify hwloc version requirements * Apply hwloc dependency suggestion
2018-08-24Add new CLHEP releases and move to sha256 hashes (#9089)Hadrien G1-19/+20
2018-08-24range-v3 package (#9093)Hadrien G1-0/+59
* Add first version of a Range-v3 package * Add C++ standard variant to range-v3 package
2018-08-23htop: add version 2.2.0 (#9086)Matthias Diener1-0/+1
2018-08-23bison: add new version (#9085)Matthias Diener1-0/+1
2018-08-23lammps: add v20180822 (#9081)Christoph Junghans1-0/+1
2018-08-23add cdo releases 1.9.4 and 1.9.5 (#9079)Brian Spilner1-0/+2
2018-08-23mvapich2: Use rdma-core for mrail and nemesis*ib* fabrics (#9072)Michael Kuhn1-1/+6
2018-08-22Open mpi add v3.1.2 (#9078)Daniel Topa1-1/+2
* Add latest release 3.0.2 https://www.open-mpi.org/software/ompi/v3.0/:x Signed-off-by: Daniel Topa <dantopa@lanl.gov> * 1. Added correct md5 sum for Open MPI v3.1.1 (https://www.open-mpi.org//software/ompi/v3.1/) 2. Made v3.1.1 the default version 3. Added libmpiso versions for v3.1.1 and 3.0.2 Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Added Open MPI v2.14 to version list; Tested build; Added libmpi.so version Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Open MPI 3.1.2 built and tested Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-22libquo: Packaging updates. (#9076)Sam Gutiérrez1-6/+13
* libquo: Packaging updates. This commit accomplishes a few things: * Changes distribution fetch source * Removes a deprecated version (1.2.9) * Changes dependencies based on version type * Adds a custom autoreconf stage when using the 'develop' version, omitting this step when building from a distribution * Reintroduce v1.2.9.
2018-08-22glib: Add 2.56.2 (#9071)Michael Kuhn1-3/+4
This should finally fix build failures on RHEL6-based distributions. Also fix the patch to apply to the correct versions and distributions.
2018-08-22libfabric: Add develop version option. (#9074)Sam Gutiérrez1-0/+12
Add develop version option to libfabric, conditionally bringing in additional build dependencies: m4, autoconf, automake, libtool.
2018-08-22leveldb: Fix header installation (#9069)Michael Kuhn1-1/+1
leveldb headers are typically included via <leveldb/c.h>. The migration to install_tree in 73c978ddd99973e29f2ba42078b10455c1de5ca8 caused the headers to end up in prefix.include, which breaks existing applications.
2018-08-22r-genefilter: new version (#9063)Levi Baber1-1/+3
* r-genefilter: new version * r-genefilter: fix version in dep
2018-08-22r-annotate: new version (#9061)Levi Baber1-1/+3
2018-08-22r-geneplotter: new version (#9060)Levi Baber1-1/+3
2018-08-22r-qvalue: new version (#9059)Levi Baber1-1/+3
2018-08-22r-rtracklayer: new version (#9056)Levi Baber1-1/+13
2018-08-22r-genomicfeatures: new version (#9057)Levi Baber1-2/+14
2018-08-22r-delayedarray: new version (#9053)Levi Baber1-4/+8
2018-08-22r-genomicranges: new version (#9052)Levi Baber1-5/+12
2018-08-22r-genomeinfodb: new version (#9051)Levi Baber1-1/+6
2018-08-22r-genomeinfodbdata: new version (#9050)Levi Baber1-1/+4
2018-08-22r-rsamtools: new version (#9049)Levi Baber1-1/+10
2018-08-22intel-parallel-studio: add version 2018.3 (#9047)Matthias Diener2-0/+8
* intel-parallel-studio: add version 2018.3 * update intel package too
2018-08-22dealii: patch boost 1.68.0 (#9070)Denis Davydov2-8/+152
* dealii: patch boost 1.68.0 * indent for readability
2018-08-22r-biostrings: new version (#9048)Levi Baber1-1/+7
2018-08-21tests: add tests for warnings in build outputTodd Gamblin1-0/+47
- add tests for build warnings and error messages - simplify some code in build environment with plural() function
2018-08-21r-iranges: new version (#9041)Levi Baber1-1/+5
* r-iranges: new version * r-iranges: typo
2018-08-21r-biobase: new version (#9038)Levi Baber1-1/+3
* r-biobase: new version * r-biobase: reordering versions
2018-08-21r-biocgenerics: new version (#9039)Levi Baber1-1/+3
* r-biocgenerics: new version * r-biocgenerics: reordering versions
2018-08-21r-annotationdbi : new version (#9040)Levi Baber1-1/+3
* r-annotationdbi: new version * r-annotationdbi: dep type * r-annotationdbi: reordering versions
2018-08-21Add 1.6.1 release. (#9042)Sam Gutiérrez1-1/+2
2018-08-21r-s4vectors: new version (#9043)Levi Baber1-2/+4
2018-08-21r-zlibbioc: new version (#9044)Levi Baber1-2/+4
2018-08-21r-xvector: new version (#9045)Levi Baber1-1/+6
2018-08-21r-biocparallel: new version (#9046)Levi Baber1-1/+3
2018-08-20dealii: add constraint on suite-sparse for old gcc (#9026)Denis Davydov1-0/+1
2018-08-20dealii: blacklist boost 1.68.0 due to segmentation fault in serialization ↵Denis Davydov1-2/+3
lib (#9023)
2018-08-20update Intel packages (2018.u5 for TBB and 2018.u3 for the others) (#8928)Denis Davydov5-0/+9
2018-08-18Open MPI: add v2.1.5 (#9021)Daniel Topa1-0/+1
Final fix for v2.1 (hopefully) Test build on LANL CCSCS4, Desktop Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-08-18Openmpi add v2.1.4 (#9006)Daniel Topa1-1/+2
* Add latest release 3.0.2 https://www.open-mpi.org/software/ompi/v3.0/:x Signed-off-by: Daniel Topa <dantopa@lanl.gov> * 1. Added correct md5 sum for Open MPI v3.1.1 (https://www.open-mpi.org//software/ompi/v3.1/) 2. Made v3.1.1 the default version 3. Added libmpiso versions for v3.1.1 and 3.0.2 Signed-off-by: Daniel Topa <dantopa@lanl.gov> * Added Open MPI v2.14 to version list; Tested build; Added libmpi.so version Signed-off-by: Daniel Topa <dantopa@lanl.gov>
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