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2016-10-30python: PYTHONHOME may not be the same as the prefix of the python ↵Barry Smith1-2/+21
executable (#2173) On MacOS, brew installs /usr/local/bin/python but the Python prefix is not /usr/local/bin Use the python command sys.exec to get the correct directory, instead of the ad hoc self.prefix previously used This was a bear to debug; been driving me nuts since I started using spack. Since spack passes PYTHONHOME down to package builds in the environment it was passing PYTHONHOME of /usr/local/bin to the PETSc build that uses Python so the PETSc Python ./configure errored immediately with ImportError: No module named site since python could find no python modules. Todd Gamblin pointed out that my first try to fix this was wrong since it assumed the spack python was the same python used to run spack. Elizabeth Fischer suggested how to get it to work also with python3 Funded-by: IDEAS Project: IDEAS/xSDK Time: 7 hours Thanks-to: Todd Gamblin, Elizabeth Fischer
2016-10-30updated gtk and gobject dependences (#2126)Gregory Lee2-0/+3
2016-10-29Update license directory for intel-paralel-studio (#2163)Adam J. Stewart1-6/+15
2016-10-28Update and Clean Up the Visit and VTK Packages (#2167)Joseph Ciurej2-62/+69
* Made some refactoring improvements to the 'visit' and 'vtk' packages. * Added a small fix for the 'vtk' package when building with 'qt+webkit'.
2016-10-27Add latest version of Intel Parallel Studio XE (#2151)Adam J. Stewart1-15/+47
2016-10-26Get Trilinos 12.6.2 to build with Intel compilers and spack (#2102)Barry Smith1-8/+17
Funded-by: IDEAS Project: IDEAS/xSDK Time: 2 hours
2016-10-26libSplash: Add 1.5.0 Release (#2137)Axel Huebl1-0/+1
Add the latest release of libSplash, version 1.5.0.
2016-10-26require fortran for MPI providers to avoid delayed compiler errors (#1937)Denis Davydov3-18/+21
* openmpi: require fortran for now * mpich: requre fortran for now * mvapich2: require fortran for now * openmpi: flake8 fixes
2016-10-26Develop: Resolve issue 2070 with new depends_on clause in the openspeedshop ↵Jim Galarowicz1-1/+1
package file. (#2136) * Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies. * Add libxml2+python depends on to get around issues with the libxml2 package file.
2016-10-26add a unit test for conretization with develop version (#2064)Denis Davydov1-0/+37
2016-10-26veclibfort: add new package (#2080)Denis Davydov1-0/+70
* veclibfort: add new package * veclibfort: add a small test
2016-10-25Add package for ant (#2133)George Hartzell1-0/+44
Add a package for ant, a java build tool.
2016-10-25Add package for maven (#2132)George Hartzell1-0/+41
Add a package that installed the pre-built maven distribution. I've given up, for now, on building maven from source. That processed stumbled on two points before I gave up: 1. It downloaded several hundred .{pop,jar} files and I despaired of figuring out some way of mirroring and checksumming them; and 2. It exploded complaining about too many unacceptable license files, which seems odd in its own source tree. Perhaps someone with more Java fu that I admit to can figure it out. In the meantime, this is useful.
2016-10-25openblas: Fixes to get OpenBLAS to install with Intel compilers (#2101)Barry Smith2-0/+258
Funded-by: IDEAS Project: IDEAS/xSDK Time: 1 hour
2016-10-25Add latest versions of Flux prerequisites (#2108)Stephen Herbein2-1/+11
* libsodium: add latest versions, fix old versions older versions of libsodium were added to an "old" subdirectory * zeromq: add 4.1.4 prerequiste for the latest develop version of flux
2016-10-25pkg-config variant to use internal glib (#2104)Mayeul d'Avezac2-8/+12
Pkg-config depends on glib which depends on pkg-config. As a result, pkg-config used to build glib internally. However, this fails on Mac. Building pkg-config with an internal glib is now a variant, turned on by default, and required to build glib.
2016-10-25Allow newer versions of GCC to compile older versions of GCC (#2107)Adam J. Stewart2-0/+139
* Add patch allowing GCC 6 to compile GCC 5 * Expand patch version range
2016-10-25Update cask to v0.8.1 (#2125)George Hartzell1-0/+2
2016-10-25Rename xpyb to py-xpyb (#2120)Adam J. Stewart1-1/+1
2016-10-25Tells boost explictly about python libraries and headers (#2106)Mayeul d'Avezac1-3/+22
* Tells boost explictly about libraries and headers Ideally, bjam would determine the libraries and headers from the executable. But it doesn't. This rigs a best guess for python libraries and headers. * Move glob import to top of file * variable name change: alllibs --> all_libs * Use dso suffix rather than hard-coded string * Use only MAJOR.MINOR when setting up python in bjam
2016-10-25spack setup : fixed regression after #1186 (#2117)Massimiliano Culpo1-13/+7
2016-10-25gmp: fix a bug (#2114)Denis Davydov1-1/+1
2016-10-24Merge pull request #1186 from epfl-scitas/features/install_with_phasesTodd Gamblin11-131/+75
do_install : allow for an arbitrary number of phases
2016-10-24Rename EditableMakefile to MakefilePackageTodd Gamblin1-1/+1
2016-10-24Get netlib-lapack to compile with Intel and add deprecated routines (#2103)Barry Smith1-1/+11
Funded-by: IDEAS Project: IDEAS/xSDK Time: .4 hours
2016-10-24Adds new versions to eigen (#2105)Mayeul d'Avezac1-3/+5
* Adds new versions to eigen * Reorder versions from oldest to newest
2016-10-23package.py : moved each specialized package to its own module filealalazo1-2/+2
2016-10-23CMakePackage, AutotoolsPackage : added default behavior on checkalalazo3-8/+2
2016-10-23Merge branch 'develop' of https://github.com/LLNL/spack into ↵alalazo36-8385/+423
features/install_with_phases_rebase
2016-10-22mumps: Add support for Intel compiler and insure both lapack and blas… (#2076)Barry Smith1-3/+11
* mumps: Add support for Intel compiler and insure both lapack and blas libraries are passed to the examples Likely it was not discoverged before that the examples require both lapack and blas libraries because it was tested with Openblas which is one large library containing everything. Funded-by: IDEAS Project: IDEAS/xSDK Time: .3 hours * flake8 fix.
2016-10-22Add Package : OpenSceneGraph (#2075)Joseph Ciurej1-0/+77
* Created the initial version of the 'OpenSceneGraph' package. * Added 'zlib' as a dependency and linked it during the build step. * Fixed a few minor PEP8 style violations in the 'OpenSceneGraph' package. * Added cmake as a build dependency and improved the build procedure. * Made a few important argument updates to improve package compatibility. * Fixed up a few remaining style issues in the 'openscenegraph' package. * Added a description for the 'openscenegraph' package. * Fixed a bug that was causing some 'openscenegraph@3.2.3%gcc' installs to fail. * Fixed a number of small issues with the 'openscenegraph' package. * Removed a number of superfluous flags from the 'openscenegraph' install.
2016-10-22Add new package "gource" and dependencies "glew, sdl, sdl-image". (#2084)Jean-Paul Pelteret4-0/+202
2016-10-21Updated the texlive digest value (#2073)George Hartzell1-1/+1
The texlive tarball, install-tl-unx.tar.gz is unversioned and changes periodically. When it does, the digest needs to change too. This does that.
2016-10-22packages : moved decorators into AutotoolsPackage and CMakePackagealalazo4-16/+3
2016-10-21Update Package : Qt (Add 'WebKit' Support) (#1455)Joseph Ciurej1-29/+43
* Added the '+webkit' variant to the 'qt' package. * Made 'qmake' an available executable to 'qt' depdendents.
2016-10-21Extend concretization test to excercise bug in concretize's provider sortingMatthew LeGendre2-1/+40
2016-10-21Add new Version property to handle joined version numbers (#2062)Adam J. Stewart6-22/+21
* Add new version property to handle joined version numbers * Add unit test for new joined property * Add documentation on version.up_to() and version.joined
2016-10-21Add latest version of Armadillo (#2061)Adam J. Stewart1-0/+1
2016-10-21patch directive : fixed retrieval from urls ( fixes #1584 ) (#2039)Massimiliano Culpo19-8329/+27
* patch directive : fixed retrieval from urls fixes #1584 - add support for 'gz' archives - fixed bugs with URL patches - updated nwchem * patch directive : added checksum to UrlPatch - refactored classes in patch.py - updated nwchem * patch directive : added caching
2016-10-21Merge branch 'develop' of https://github.com/LLNL/spack into ↵alalazo306-648/+14771
features/install_with_phases_rebase Conflicts: lib/spack/spack/cmd/install.py lib/spack/spack/cmd/setup.py
2016-10-19Fixes needed to build gcc on Linux/ppc64le (#2057)Matthew LeGendre3-1/+1191
* Fixes needed to build gcc on Linux/ppc64le * flake8 fix.
2016-10-19Fix cdd package definition, dotted is a property (#2054)George Hartzell1-1/+1
Things that accessed the cdd package, such as `spack info cdd run tripped over a buglet in the *cdd* package, causing them to exit with something like this: ``` Caused by: TypeError: 'str' object is not callable File "/rss/spack/lib/spack/spack/repository.py", line 584, in get self._instances[key] = package_class(copy) File "/rss/spack/lib/spack/spack/package.py", line 398, in __init__ f = fs.for_package_version(self, self.version) File "/rss/spack/lib/spack/spack/fetch_strategy.py", line 852, in for_package_version attrs['url'] = pkg.url_for_version(version) File "/rss/spack/var/spack/repos/builtin/packages/cdd/package.py", line 40, in url_for_version str(version.dotted()).replace('.', '')) ``` @tgamblin pointed out that `dotted` is a property, not a functin call and that the parentheses are therefor inappropriate. This deletes the parentheses. `spack info cdd` now works for me.
2016-10-19Add package for htop (#2051)George Hartzell1-0/+41
Add package for htop, an interactive text-mode process viewer for Unix systems. Think top, with pretty colors and dyanmic bar graphs. More info [here](https://github.com/hishamhm/htop).
2016-10-18petsc: minor fixes... (#2036)Denis Davydov1-2/+4
* petsc: require boost for :3.5 only * petsc: turn off download for c2html and hwloc
2016-10-18Support for bazel (#2023)Eric4-0/+369
* Add package bazel * Add support for bazel-based builds
2016-10-18superlu-dist: add 5.1.0 and 5.1.1 (#2038)Denis Davydov1-0/+2
2016-10-18mumps: add 5.0.2 (#2041)Denis Davydov1-0/+1
2016-10-18hypre: add 2.11.1 (#2040)Denis Davydov1-0/+1
2016-10-17Update the Krell Institute products to use the latest features of spa… (#1984)Jim Galarowicz6-316/+253
* Update the krell institute products to use the latest features of spack for building on cluster platforms. * Address travis error messages and resubmit the pull request. * Update the contents of openspeedshop package.py so it passes the flake8 tests. * Fix flake8 error-whitespack issue in mrnet package.py file. * Add updates based on spack reviewer feedback. * More fixes based on comments from reviewers. Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH. * More review related changes. Update MPIOption.append lines and take out xercesc references. * Create a base options function for common openspeedshop base cmake options to reduce redundencies.
2016-10-17fix download url for paraver (#2033)Pramod Kumbhar1-2/+4
* fix download url for paraver * added note to remove older version
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