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2017-10-13trilinos / oce : add missing if before calling macOS_version (#5743)Denis Davydov2-2/+3
* trilinos: add missing if before calling macOS_version * oce: add missing if before calling macOS_version
2017-10-13r-readr: created new package (#5741)Yifan Zhu1-0/+43
2017-10-13r-dorng: created new package (#5740)Yifan Zhu1-0/+46
2017-10-13r-stringr: added list_url and version 1.2.0 (#5738)Yifan Zhu1-0/+2
2017-10-13r-stringi: added list_url and version 1.1.5 and 1.1.3 (#5737)Yifan Zhu1-0/+3
2017-10-13r-summarizedexperiment: created new package (#5734)Yifan Zhu1-0/+47
2017-10-13r-yaqcaffy: added list_url and versioned dependency on r (#5730)Yifan Zhu1-0/+2
2017-10-13slepc: refine version constraints for petsc 3.8 (#5752)Denis Davydov1-4/+8
2017-10-13openblas: remove extra develop version (#5750)Denis Davydov1-2/+0
2017-10-13gettext: fix prefix (#5749)Denis Davydov1-1/+1
2017-10-12Lbann flags (#5747)Brian Van Essen2-3/+2
* Fixed the datatype flag in the LBANN package. Also added develop version to OpenBLAS. * Fixed where the datatype flag should be set.
2017-10-12r-gcrma: added versioned dependency on r (#5670)Yifan Zhu1-0/+1
2017-10-12r-simpleaffy: added versioned dependency on r (#5673)Yifan Zhu1-0/+1
2017-10-12petsc: add in maintainers (#5729)Satish Balay1-0/+2
2017-10-12Add the option for a versioned layout to boost (#5709)David Hows1-0/+6
2017-10-12kaks-calculator: new package (#5725)Audrey Thoma1-0/+59
* kaks-calculator: new package * kaks-calculator: new package * fixing homepage
2017-10-12petsc: update to latest 3.8 version [and include 3.7.7] (#5723)Satish Balay1-1/+3
Also fix flake8 warning "import os should be before import sys"
2017-10-12Add OpenFAST package (wind turbine simulation tool). (#5662)Jon Rood1-0/+93
* Add OpenFAST package (wind turbine simulator). * Adding maintainer to openfast package. * Fixing copyright date.
2017-10-12various fixes for macOS high sierra (#5647)Denis Davydov6-4/+42
* various fixes for macOS high sierra * add macOS_version() helper function * flake8 fixes * update oce and trilinos * fix bison
2017-10-12samtools: add version 1.6 + some fixes (#5715)Carlos Bederián3-9/+11
* htslib: add version 1.6 * samtools: add version 1.6, remove zlib dependency * bcftools: add version 1.6, switch to using standalone htslib
2017-10-12minimap2: new package (#5722)Audrey Thoma2-0/+77
2017-10-12Initial version of libpcap (#5710)David Hows1-0/+34
Add a package script for libpcap with the current version (1.8.1)
2017-10-11r-affy: added versioned dependency on r (#5660)Yifan Zhu1-0/+1
2017-10-11r-affyio: added versioned dependency on r (#5661)Yifan Zhu1-0/+1
2017-10-11r-biocinstaller: added versioned dependency on r (#5663)Yifan Zhu1-1/+1
2017-10-11r-matrixstats: created new package (#5682)Yifan Zhu1-0/+40
2017-10-11r-biocgenerics: added version 0.22.1 and added versioned dependency on r (#5683)Yifan Zhu1-0/+4
2017-10-11r-genomeinfodbdata: added versioned dependency on r (#5685)Yifan Zhu1-0/+1
2017-10-11r-genomeinfodb: created new package (#5695)Yifan Zhu1-0/+46
2017-10-11r-genomicranges: added new package (#5697)Yifan Zhu1-0/+52
2017-10-11r-futile-options: created new package (#5699)Yifan Zhu1-0/+34
2017-10-11r-lambda-r: created new package (#5700)Yifan Zhu1-0/+36
2017-10-11r-futile-logger: created new package (#5701)Yifan Zhu1-0/+40
2017-10-11r-rsamtools: created new package (#5702)Yifan Zhu1-0/+50
2017-10-11r-biocparallel: created new package (#5703)Yifan Zhu1-0/+41
2017-10-11r-delayedarray: created new package (#5704)Yifan Zhu1-0/+54
2017-10-11r-biomart: added versioned dependency on r (#5666)Yifan Zhu1-0/+1
2017-10-11Strelka depends on boost 1.56.0 *or newer* (#5690)George Hartzell1-1/+1
Relax/correct the constraint on the version of boost used by Strelka to match the docs.
2017-10-11dealii: minor fixes (#5687)Denis Davydov1-3/+3
* dealii: fix minor bug in Assimp config * dealii: request sundials without pthreads
2017-10-11Add a bundle package for the ECP proxy applications suite (#5689)Christoph Junghans3-2/+57
* Add a bundle package for the ECP proxy applications suite * Update package.py
2017-10-10Add a package: dmlc/mxnet. (#3579)健美猫11-0/+573
* Add dmlc/mxnet packags. * Build mxnet+cuda+opencv with GCC-4.8.5 and GCC-5.4.0. * Build mxnet version 0.10.0, 0.10.0.post1 and 0.10.0.post2. * Add component version constrain for mxnet 0.10.0.x . * Go through flake8. * Replace commit hash with commit date as package version. * Go throught Travis-CI. * Update submodule version for 0.10.0.post2. * Add openmp variant for dmlc-core and mxnet. * Refine variant handling. * Fix filter_file for dmlc-core. * Cut long strings into multiple lies due to PEP8 requirements. * Fix for PEP8. * Add CUB_INCLUDE. * Add py-mxnet: Python binding for MXNet. * Remove distutils.dir_util. * Add the profiler variant for mxnet. * Add a shared variant for nnvm. * Set USE_OPENMP to OFF by default. * Fix flake8 errors. * Fix flake8 issues. * flake8 issues again.
2017-10-10Adding flang - a llvm based Fortran compiler (#5459)Christoph Junghans1-0/+80
* flang: initial commit * flang: added symlink to clang's flang * add flang wrapper * flang wrapper: inject rpath as well * flang wrapper: PATH -> -B
2017-10-10ninja: add v1.8.2 (#5625)Christoph Junghans1-0/+1
2017-10-10plumed: reworked patching applications, added new version (#5680)Massimiliano Culpo1-47/+31
closes #5506 The application of patches to upstream executables has been reworked according to the suggestions of the main developer in #5506. In particular we are not maintaining a dictionary that maps plumed versions to the versions of patchable executables, and we are using a non-interactive command to patch applications. All the comments on substituting plumed at run-time do not apply here, since we use RPATH and we want to maintain a 1:1 relationship between the DAG hash and the plumed library used.
2017-10-10snap-korf: new package (#5589)Audrey Thoma1-0/+62
2017-10-09Adding openfast variant to nalu. (#5675)Jon Rood1-0/+9
2017-10-09r-adsplit: Create new package and update version for its dependencies. (#5640)lingnanyuan3-0/+47
* r-adsplit: Create new package. * r-rlang: Update version. * r-s4vectors: Update version.
2017-10-09switching downloads to git (#5659)Audrey Thoma1-7/+6
2017-10-09r-affycompatible: Create new package. (#5664)lingnanyuan1-0/+44
2017-10-09r-affydata: Create new package. (#5665)lingnanyuan1-0/+39