| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2021-09-20 | Allow setting variant name in AutotoolsPackage._activate_or_not (#26054) | iarspider | 1 | -0/+2 | |
| 2021-09-20 | Fix R version (#26061) | jacorvar | 1 | -1/+1 | |
| R version should be `3.0.0` instead of `3.00`. | |||||
| 2021-09-19 | added NOAA software team to maintainers list (#26057) | Edward Hartnett | 1 | -4/+8 | |
| 2021-09-19 | updating OmegaH to 9.34.1 (#26015) | Vanessasaurus | 1 | -1/+1 | |
| 2021-09-19 | updating kokkos to 3.4.01 (#26013) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-19 | updating singularity to 3.8.3 (#26020) | Vanessasaurus | 1 | -3/+3 | |
| Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com> | |||||
| 2021-09-19 | Fix R version (#26047) | jacorvar | 1 | -1/+1 | |
| R version should be `3.0.0`, in contrast to `3.00`. | |||||
| 2021-09-18 | Add v1.6.0 to Benchmark (#25996) | Alec Scott | 1 | -1/+2 | |
| 2021-09-18 | omegah: add version 9.34.1 (#25828) | Cameron Smith | 1 | -0/+1 | |
| 2021-09-18 | Add v0.935 to Angsd (#25995) | Alec Scott | 1 | -1/+2 | |
| 2021-09-19 | Python: use platform-specific site packages dir (#25998) | Adam J. Stewart | 1 | -1/+1 | |
| 2021-09-18 | cmake: allow gcc on macOS for newer versions (#25994) | Seth R. Johnson | 1 | -5/+4 | |
| 2021-09-18 | librsb: add v1.2.0.10 (#26044) | Michele Martone | 1 | -1/+2 | |
| 2021-09-18 | FFTW: Fix OpenMP Build on macOS (#26039) | Axel Huebl | 1 | -0/+11 | |
| 2021-09-18 | updating siesta to 4.0.2 (#26021) | Vanessasaurus | 1 | -2/+5 | |
| 2021-09-18 | updating universal ctags to 5.2.0.xxxx (#26024) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating sparsehash to 2.0.4 (#26023) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating htslib to 1.13 (#26012) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating nco to 5.0.1 (#26014) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating graphviz to 2.49.0 (#26011) | Vanessasaurus | 1 | -0/+1 | |
| 2021-09-18 | updating veloc to 1.5 and cleaning up spacing (#26025) | Vanessasaurus | 1 | -7/+7 | |
| 2021-09-18 | updating cloc to 1.9.0 (#26009) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating poppler (#26016) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating raxml to 8.2.12 (#26018) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating protobuf (Gooooogle!) to 3.18.0 (#26017) | Vanessasaurus | 1 | -39/+40 | |
| 2021-09-18 | updating samtools to 1.13 (#26019) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating spades to 3.15.3 (#26022) | Vanessasaurus | 1 | -1/+2 | |
| 2021-09-18 | updating gatk to 4.2.2.0 (#26010) | Vanessasaurus | 1 | -73/+21 | |
| 2021-09-17 | Convert RAJA, CHAI and Umpire to CachedCMakePackages (#25788) | David Beckingsale | 3 | -105/+191 | |
| * Switch Umpire to CMakeCachedPackage * Fix missing import * Correct tests option in Umpire * Switch RAJA to CachedCMakePackage * Convert CHAI to CachedCMakePackage * Corrections in RAJA * Patches in Umpire & RAJA for BLT target export * Fixup style * Fixup incorrect use of cmake_cache_string | |||||
| 2021-09-17 | update tutorial version of hdf5 (#25368) | Chris White | 5 | -117/+417 | |
| 2021-09-17 | Bump reframe (#25970) | Harmen Stoppels | 1 | -0/+1 | |
| 2021-09-17 | Add ccache v4.4.1. (#25957) | Olli Lupton | 1 | -0/+1 | |
| 2021-09-17 | improve ascent package to use stages and cmake base (#25720) | Cyrus Harrison | 1 | -73/+70 | |
| * improve ascent package to use stages and cmake base * style * more style | |||||
| 2021-09-17 | fmt: add variant for shared library (#25969) | iarspider | 1 | -1/+5 | |
| 2021-09-17 | variant build: openmp_ref should be openmp (#26006) | eugeneswalker | 1 | -1/+1 | |
| 2021-09-17 | gosam: new version 2.1.1 (#25985) | iarspider | 1 | -4/+8 | |
| 2021-09-16 | GCC: patch for gcc 10.3.0 ICE when using nvcc (#25980) | Kurt Sansom | 1 | -0/+3 | |
| * fix: patch for gcc 10.3.0 ICE when using nvcc * fix: use URL reference instead * fix: add missing sha256sum | |||||
| 2021-09-16 | added package.py for GPTL (#25993) | Edward Hartnett | 1 | -0/+47 | |
| 2021-09-16 | workaround a cmake/rocm bug in heffte (#25948) | Miroslav Stoyanov | 1 | -0/+4 | |
| 2021-09-16 | Add v7.0.2 to Admixtools (#25997) | Alec Scott | 1 | -6/+7 | |
| 2021-09-16 | Fix for problem with cmake@3.21 (#25989) | G-Ragghianti | 1 | -0/+3 | |
| 2021-09-16 | New package: ROMS (#25990) | AMD Toolchain Support | 1 | -0/+141 | |
| Co-authored-by: Mohan Babu <mohbabul@amd.com> | |||||
| 2021-09-16 | Bump sirius 7.2.x (#25939) | Harmen Stoppels | 1 | -0/+2 | |
| 2021-09-16 | Update HPX package (#25775) | Mikael Simberg | 2 | -40/+82 | |
| * Add support for C++20 to HPX package * Enable unity builds in HPX package when available * Add support for HIP/ROCm to HPX package * Rearrange and update required versions for HPX package * Add C++20 option to asio package | |||||
| 2021-09-15 | bedops: Fix checksum for 2.4.40 (#25958) | jacorvar | 1 | -1/+1 | |
| Fixes #25951 | |||||
| 2021-09-15 | py-pybind11: use PythonPackage install method (#25650) | Adam J. Stewart | 1 | -6/+5 | |
| 2021-09-15 | Added LvArray 0.2.2 (#25950) | Ben Corbett | 1 | -0/+1 | |
| 2021-09-14 | Make clingo the default solver (#25502) | Massimiliano Culpo | 2 | -10/+21 | |
| Modifications: - [x] Change `defaults/config.yaml` - [x] Add a fix for bootstrapping patchelf from sources if `compilers.yaml` is empty - [x] Make `SPACK_TEST_SOLVER=clingo` the default for unit-tests - [x] Fix package failures in the e4s pipeline Caveats: 1. CentOS 6 still uses the original concretizer as it can't connect to the buildcache due to issues with `ssl` (bootstrapping from sources requires a C++14 capable compiler) 1. I had to update the image tag for GitlabCI in e699f14. 1. libtool v2.4.2 has been deprecated and other packages received some update | |||||
| 2021-09-14 | Adding ability to compare git references to spack install (#24639) | Vanessasaurus | 1 | -0/+24 | |
| This will allow a user to (from anywhere a Spec is parsed including both name and version) refer to a git commit in lieu of a package version, and be able to make comparisons with releases in the history based on commits (or with other commits). We do this by way of: - Adding a property, is_commit, to a version, meaning I can always check if a version is a commit and then change some action. - Adding an attribute to the Version object which can lookup commits from a git repo and find the last known version before that commit, and the distance - Construct new Version comparators, which are tuples. For normal versions, they are unchanged. For commits with a previous version x.y.z, d commits away, the comparator is (x, y, z, '', d). For commits with no previous version, the comparator is ('', d) where d is the distance from the first commit in the repo. - Metadata on git commits is cached in the misc_cache, for quick lookup later. - Git repos are cached as bare repos in `~/.spack/git_repos` - In both caches, git repo urls are turned into file paths within the cache If a commit cannot be found in the cached git repo, we fetch from the repo. If a commit is found in the cached metadata, we do not recompare to newly downloaded tags (assuming repo structure does not change). The cached metadata may be thrown out by using the `spack clean -m` option if you know the repo structure has changed in a way that invalidates existing entries. Future work will include automatic updates. # Finding previous versions Spack will search the repo for any tags that match the string of a version given by the `version` directive. Spack will also search for any tags that match `v + string` for any version string. Beyond that, Spack will search for tags that match a SEMVER regex (i.e., tags of the form x.y.z) and interpret those tags as valid versions as well. Future work will increase the breadth of tags understood by Spack For each tag, Spack queries git to determine whether the tag is an ancestor of the commit in question or not. Spack then sorts the tags that are ancestors of the commit by commit-distance in the repo, and takes the nearest ancestor. The version represented by that tag is listed as the previous version for the commit. Not all commits will find a previous version, depending on the package workflow. Future work may enable more tangential relationships between commits and versions to be discovered, but many commits in real world git repos require human knowledge to associate with a most recent previous version. Future work will also allow packages to specify commit/tag/version relationships manually for such situations. # Version comparisons. The empty string is a valid component of a Spack version tuple, and is in fact the lowest-valued component. It cannot be generated as part of any valid version. These two characteristics make it perfect for delineating previous versions from distances. For any version x.y.z, (x, y, z, '', _) will be less than any "real" version beginning x.y.z. This ensures that no distance from a release will cause the commit to be interpreted as "greater than" a version which is not an ancestor of it. Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: Gregory Becker <becker33@llnl.gov> Co-authored-by: Todd Gamblin <tgamblin@llnl.gov> | |||||
| 2021-09-15 | gcc: apply backported fixes to v4.9.3 (#25945) | David Beckingsale | 1 | -1/+1 | |
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index : spack | |
| A flexible package manager that supports multiple versions, configurations, platforms, and compilers. | root |
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