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* elfutils: option to install elf.h header file
Add variant 'elfh' (default False) to install the elf.h header file to
the include directory. This provides access to a newer version of
elf.h and allows an elf application to build with the same elf.h that
libelf.so was built with.
Add version 0.175.
* Drop the variant 'elfh' and always install elf.h instead.
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* new package: git-fat
* backport of rsync -> older versions no longer available
Change-Id: I3a41f17df0f88ca11e08ea6fd2f2d381435e0f09
* fix legal stuff and use new git attribute
Change-Id: Ice156dfe8ad4137a861f7b2938ee92f4024142be
* use date as version number rather than hash
Change-Id: Ib537659e368f69124895306d6a6ac0c5e36061a7
* only use the date once
Change-Id: I2592fa28aaa53fed949ddc82959d712ff3f6f752
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Add the development version of OpenMPI from the git repo
in `master`.
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* Initial compiler support
* added arm.py
* Changed licence to Arm suggested header
* Changed licence to the same as clang.py
Main author of file is Nick Forrington <Nick.Forrington@arm.com>
Minor changes by Srinath Vadlamani <srinath.vadlamani@arm.com>
* compilers: add arm compiler detection to Spack
- added arm.py with support for detecting `armclang` and `armflang`
Co-authored-by: Srinath Vadlamani <srinath.vadlamani@arm.com>
* Changed to using get get_compiler_version
* linking to general cc for arm compiler
* For arm compiler add CFLAGS to use compiler-rt rtlib.
* Escape for special characters in rexep
* Cleaned up for Flake8 to pass.
* libcompiler-rt should be part of the LDFLAGS not CFLAGS
* fixed m4 when using clang to used LDFLAGS. Fixed comments for arm.py to display compiler --version output with # NOAQ for flakes pass.
* added arm compilers
* proper linked names
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* updated versions for r-ape
* added type=('build', 'run') to r dependency
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* updated versions for r-cowplot
* depends_on: added type=('build', 'run') to r, and added r-scales
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* updated versions for r-data-table
* added type=('build', 'run') to r dependency
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* added new versions, and tightened up depends_on() specs
* added type=('build', 'run') to r dependency
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* add the tfel package
* fix the tfel package
* fix the tfel package
* fix the tfel package
* Taking Adam J. Steward' remarks into account
* fixes trailing white spaces
* Update description
* Update dependencies following @adamjstewart adices
* Style fixes
* Style fixes
* Add java optional support
* add the maintainers attribute (following @alalazo advice), disable interface not selected (following @adamjstewart advice)
* flake8 fixes
* Fix Cast3M and python-bindings support. Python detection is made compatible with cmake'FindPythonLibs module (at least how it is used in TFEL)
* Style fixes
* Style fixes
* Fix test on python version
* Follow @adamjstewart advices: code is much cleaner and readable
* Small fix
* Small fix
* Add comment
* Small fix in cmake option
* try again (trying to overcome Travis CI unstable build process)
* Add support for the MFrontGenericInterfaceSupport project (MGIS)
* Style fixes
* Package documentation update
* Package documentation update
* Fix a typo thanks to Andreas Baumbach review
* Follow Adam J. Stewart advices
* Fix type
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* usearch: Make binary executable
* usearch: remove join_path
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* updated release and checksums, also tightened depends_on()
* remove blank line at end of file
* removing new version 0.5
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* libzip: Add zlib dependency
* libzip: Add version limit
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Change-Id: I2837dc098fce142b152d2969687d1873e182bbc8
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Add "-rtlib=compiler-rt" to CFLAGS when building with either Clang or
the ARM compiler.
Refs #10279
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Change-Id: Icf20035367a34fa88acfef2d3fa3742c3f3901ac
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* bowtie: new versions and %gcc@8.0.0: fix
Bowtie development shifted from Sourceforge to GitHub.
This commit adds several versions from GitHub, using the archive
tarballs. Note that the URL for 1.2.2 tarball is actually an '_p1'
tag....
It leaves the old 1.2 release download info in place.
Versions 1.2.0 and newer come from GitHub (I'm unsure if the 1.2 and
1.2.0 are equivalent).
Include a fix that enables %gcc@8.0.0: from:
https://github.com/BenLangmead/bowtie/issues/87
But, v1.2.2 has trouble with "newer" gcc's, so it only adds v1.2.2 for
%gcc@6.0.0:.
Feel free to tighten this. I know that:
- 1.2 -> 1.2.2 work with %gcc@5.5.0;
- 1.2 -> 1.2.1.1 work with %gcc@8.2.0; and
- 1.2.2 fails with %gcc@8.2.0
* Tighten to `conflicts('%gcc@8:', when='@1.2.2')`
* Point 1.2.2 and 1.2.2_p1 at the 1.2.2_p1 tarball
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* Update package.py
Doxygen has migrated from a private SVN to GitHub. This PR updates the URLs and adds versioned commit hashes from GitHub. It also includes version 1.8.15 as the latest option.
* Update package.py
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This enforces conventions that allow for correct handling of
multi-valued variants where specifying no value is an option,
and adds convenience functionality for specifying multi-valued
variants with conflicting sets of values. This also adds a notion
of "feature values" for variants, which are those that are understood
by the build system (e.g. those that would appear as configure
options). In more detail:
* Add documentation on variants to the packaging guide
* Forbid usage of '' or None as a possible variant value, in
particular as a default. To indicate choosing no value, the user
must explicitly define an option like 'none'. Without this,
multi-valued variants with default set to None were not parsable
from the command line (Fixes #6314)
* Add "disjoint_sets" function to support the declaration of
multi-valued variants with conflicting sets of options. For example
a variant "foo" with possible values "a", "b", and "c" where "c"
is exclusive of the other values ("foo=a,b" and "foo=c" are
valid but "foo=a,c" is not).
* Add "any_combination_of" function to support the declaration of
multi-valued variants where it is valid to choose none of the
values. This automatically defines "none" as an option (exclusive
with all other choices); this value does not appear when iterating
over the variant's values, for example in "with_or_without" (which
constructs autotools option strings from variant values).
* The "disjoint_sets" and "any_combination_of" methods return an
object which tracks the possible values. It is also possible to
indicate that some of these values do not correspond to options
understood by the package's build system, such that methods like
"with_or_without" will not define options for those values (this
occurs automatically for "none")
* Add documentation for usage of new functions for specifying
multi-valued variants
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* Added package osmctools
* Simplified
Removed functions that did the same as existing defaults
* flake8
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Add the 2.5.0 release of catch2.
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* PARALLEL-NETCDF: Update new version and location
PnetCDF-1.11.0 is released.
Also, the canonical download area has been changed and they are now using git, so can also provide a develop and master checkout.
One issue is that they changed the name of the tar files, so 1.11.0 needs special handling (and future versions will also).
All checksums at new location match the checksums from the old location.
* Address concerns in review
Added a `url_for_version` function to handle the name change in the tar files at version 1.11.0 and later. Updated description to match current shown on website. Updated `homepage` setting since it has recently moved.
* Address issues in second review
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r-tidyverse needs r-readr@1.1.1, r-reardr needs a list_url so that it
can find it.
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- in many files, regular strings were used in places where raw strings
should've been used.
- convert these to raw strings and get rid of new flake8 errors
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* express: new version, use tags and fix gcc@6.0.0:
Express fails to build with gcc@6.0.0:.
The debian project [has a
fix](https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=811859) but
they don't seem to have pushed it upstream.
I've opened an issue and a PR in eXpress repo, but eXpress isn't
actively developed, so I'm fixing it here too.
Since the Spack package was created, the eXpress team tagged their
releases. I've updated the package to use the tags.
Version 1.5.1 used to be known as 2015-11-29 (same commit). 1.5.2 is
new(er).
* Make flake8 happ{y,ier}
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Apply fix from aspell issue (519) for a pointer dereference bug that
newer versions of gcc won't let slip past.
There hasn't been a release that includes the fix, this applies the
change to the latest release.
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There's a missing break in a switch statement that newer gcc's
dislike.
Our #4696 simply disallowed newer gcc's.
This fixes the problem instead.
It's been [PR'ed upstream](https://github.com/agordon/fastx_toolkit/pull/22).
Tested with gcc@5.5.0 and gcc@8.2.0 on CentOS.
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The most recent release of bamutil that we support uses an embedded
copy of libStatGen that has several issues that keep it from building
with newer releases of gcc.
They've all been fixed upstream and the latest release of bamutil
would pick them up if/when we support it. The build process has
changed though, plus my team needs *this* version.
This commit backports those fixes.
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* ds: new package at 9.8.0rc6
* ds: move patches to patch func
* ds: use built-in configure phase, remove autoreconf skip
* ds: revert to stable 9.8.0
* ds: remove unnecessary dep types
* ds: make url consistent with versions
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corner cases. (#10216)
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