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2021-06-22Implement CVS fetcher (#23212)Erik Schnetter1-0/+13
Spack packages can now fetch versions from CVS repositories. Note this fetch mechanism is unsafe unless using :extssh:. Most public CVS repositories use an insecure protocol implemented as part of CVS.
2021-06-22py-pythran: add new package (#24440)Adam J. Stewart1-0/+25
2021-06-22adding save of build times on install (#24350)Vanessasaurus1-0/+30
Here we are adding an install_times.json into the spack install metadata folder. We record a total, global time, along with the times for each phase. The type of phase or install start / end is included (e.g., build or fail) Signed-off-by: vsoch <vsoch@users.noreply.github.com> Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2021-06-22py-beniget: add new package (#24439)Adam J. Stewart1-0/+19
2021-06-22py-gast: add v0.4.0 (#24437)Adam J. Stewart1-0/+1
2021-06-21hdf5: fix compiler detection in flag_handler (#24451)Paul Henning1-1/+1
The original implementation of `flag_handler` searched the `self.compiler.cc` string for `clang` or `gcc` in order to add a flag for those compilers. This approach fails when using a spack-installed compiler that was itself built with gcc or clang, as those strings will appear in the fully-qualified compiler executable paths. This commit switches to searching for `%gcc` or `%clang` in `self.spec`. Co-authored-by: Paul Henning <phenning@lanl.gov>
2021-06-21open mpi: remove preferred for 4.0.5 release (#24433)Howard Pritchard1-1/+1
the 4.1.1 release has fixes for problems that kept 4.1.0 from being the default open mpi version to build using spack. related to #24396 Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2021-06-21MAGMA: add patch to build with CUDA sm_37 (#24442)Adam J. Stewart2-0/+28
2021-06-22Axom: Remove blueos check on cuda variant (#24349)Chris White1-63/+67
* remove blueos check on cuda variant, fix typo * restore necessary compiler guard * remove axom+cuda from testing because it only partially works outside ppc systems
2021-06-21Fetching: git on Mac OS (#24247)Peter Scheibel1-1/+2
Extend the changes in #24163 to unit tests.
2021-06-19psimd: add new package (#24406)Adam J. Stewart1-0/+24
2021-06-19cpuinfo: add new versions (#24402)Adam J. Stewart1-0/+7
2021-06-19FP16: add new versions, prevent downloads (#24403)Adam J. Stewart1-4/+42
2021-06-19pthreadpool: add new versions (#24404)Adam J. Stewart1-0/+6
2021-06-19FXdiv: add new package (#24405)Adam J. Stewart1-0/+47
2021-06-19singularity: add v3.8.0 (#24407)snehring1-0/+1
2021-06-19Beast2: add v2.6.4 (#24410)Alec Scott1-1/+3
2021-06-19bedtools2: add v2.30.0 (#24412)Alec Scott1-1/+2
2021-06-19benchmark: add v1.5.5 (#24413)Alec Scott1-2/+3
2021-06-19Bismarck: add v0.23.0 (#24414)Alec Scott1-1/+2
2021-06-19cantera: add v2.5.1 (#24415)Alec Scott1-1/+3
2021-06-19coreset: add v1.09 (#24419)Alec Scott1-1/+2
2021-06-19diamond: add v2.0.9 (#24421)Alec Scott1-1/+3
2021-06-18reditools: update and add features (#24370)Glenn Johnson5-944/+236
This PR does the following: - adds version corresponding to commit at 08/03/2020 - adds missing get_DE_events.py script - adds dependencies needed by get_DE_events.py - removes REDItoolDenovo.py.patch and python2to3.patch in favor of running 2to3 and reindent pre-build - add batch_sort.patch to handle differences in string/char handling betweeen python2 and python3 - adds a variant for the Nature Protocol - adds dependencies for the nature_protocol variant - added myself as maintainer This PR adds a new version of reditools from git.
2021-06-18Add LIKWID 5.2.0 and a patch for LIKWID 5.1.0 (#24399)Thomas Gruber1-3/+27
2021-06-18abi-dumper: add v1.2 (#24392)Alec Scott1-3/+4
2021-06-18SLATE: Add e4s testsuite-inspired smoke test (#23376)Sergei Shudler1-0/+28
2021-06-18Heffte: Add e4s testsuite-inspired smoke test (#23652)Sergei Shudler1-0/+61
2021-06-18Removed unofficial MAGMA release and enabled MAGMA in e4s (#24400)G-Ragghianti2-30/+1
2021-06-18spla: add version 1.5.0 and fix compilation with amdblis (#24374)Simon Frasch2-0/+18
2021-06-18Checksum update for NAGCompiler download , Version 7.0 (Build 7048) (#24360)Themos Tsikas1-1/+1
2021-06-18petsc, petsc4py: add version 3.15.1 (#24397)Satish Balay2-0/+2
2021-06-18double-conversion: New versions 3.1.5, 2.0.2 (#24385)Erik Schnetter1-0/+2
A version 2.0.3 is also advertised, but doesn't download.
2021-06-18Fixes for opencv (#24361)Glenn Johnson2-4/+28
This PR fixes a couple of issues with the opencv package, mostly in relation to cuda. This is only focused on cuda, not any of the other variants. - Added versions to the contrib_vers list. Added for all that can be retrieved from github. The one for the latest version was missing. - Added a cmake patch for v3.2.0. - Deprecated versions 3.1.0 and 3.2.0 as neither of those could be built, with or without cuda. - Adjusted constraints on applying initial cmake patch. - Added cudnn dependency when +cuda. - Set constraints for cudnn and cuda for older versions of opencv.
2021-06-18FBGEMM: GCC 5+ and AVX2 required (#24356)Adam J. Stewart1-0/+8
2021-06-17gsl package: update patch for later version (#22968)Glenn Johnson2-0/+324
Old patch is still provided for older versions.
2021-06-17vtk: Limit freetype versions (#24389)Erik Schnetter1-0/+3
freetype 2.0.3 introduces an incompatible change Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-06-17gloo: add +cuda variant (#24390)Adam J. Stewart1-1/+4
2021-06-17hwloc: New version 2.5.0 (#24387)Erik Schnetter1-0/+1
2021-06-17freetype: Add version 2.0.2 (#24386)Erik Schnetter1-0/+1
2021-06-17MAGMA: add v2.6.0, sm_37 support (#24383)Adam J. Stewart2-0/+29
2021-06-17ONNX: add new package (#24384)Adam J. Stewart1-0/+26
2021-06-17arm-forge: add v21.0.2 and variant to detect PMU counters (#24298)Nick Forrington1-3/+14
2021-06-17Fix an issue where cray module files may not have CRAY_MPICH_DIR set (#24267)Harmen Stoppels1-0/+7
2021-06-17vtk: patch to replace use of FT_CALLBACK_DEF (#24238)Tom Payerle1-0/+6
2021-06-17New package: py-pyusb (#23733)Andreas Baumbach1-0/+20
* New package: py-pyusb Change-Id: I606127858b961b5841c60befc5a8353df0f9f38c * fixup dependencies Change-Id: I0c9b0ccee693d2c4e847717950d4ce64cb319794 * fixup 2 Change-Id: Ibaccbdafd865e363564f491054e4e4ceb778727b * Update var/spack/repos/builtin/packages/py-pyusb/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-06-17Break llvm-amdgpu circular dependency with rocm-device-libs (#23859)Harmen Stoppels38-335/+349
2021-06-17add -fallow-argument-mismatch flag for gcc10 (#24354)Anton Kozhevnikov1-0/+5
2021-06-17New package: py-pyscreeze (#24251)Jen Herting1-0/+23
* [py-pyscreeze] created template * [py-pyscreeze] added dependencies * [py-pyscreeze] depends on scrot * [py-pyscreeze] Final cleanup - added homepage - added description - removed fixmes * [py-pyscreeze] using pil provider
2021-06-17open mpi: add v4.0.6 and fix a bug (#24344)Howard Pritchard1-1/+2
A patch no longer applies cleanly as its fixed in v4.0.6 - fix it here ==> Installing openmpi-4.0.6-in47f6rxspbnyibkdx6x4ekg6piujobd ==> No binary for openmpi-4.0.6-in47f6rxspbnyibkdx6x4ekg6piujobd found: installing from source ==> Fetching https://download.open-mpi.org/release/open-mpi/v4.0/openmpi-4.0.6.tar.bz2 Reversed (or previously applied) patch detected! Assume -R? [n] Apply anyway? [n] 2 out of 2 hunks ignored -- saving rejects to file opal/include/opal/sys/gcc_builtin/atomic.h.rej Signed-off-by: Howard Pritchard <howardp@lanl.gov>
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