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2017-05-11Update NAG checksum, add F77 and FC (#4196)Adam J. Stewart1-1/+5
2017-05-10Open MPI: add 2.1.1 to the list (#4204)Howard Pritchard1-1/+2
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2017-05-10Add nemesistcpib fabrics variant (#4197)Michael Kuhn1-1/+4
2017-05-10updating git (#4200)Suzanne Parete-Koon1-0/+5
2017-05-10cosmomc: Enable Python bindings (#4169)Erik Schnetter1-4/+13
* cosmomc: Enable Python bindings * cosmomc: Make python dependency optional
2017-05-10hdf5: Correct spelling (#4172)Erik Schnetter1-3/+3
* hdf5: Correct spelling * hdf5: avoid trailing spaces
2017-05-10highfive: New package; this is a C++ wrapper for the HDF5 library (#4173)Erik Schnetter1-0/+52
* highfive: New package; this is a C++ wrapper for the HDF5 library The C++ wrapper that is shipped with the HDF5 library has several shortcomings. The highfive library seems to avoid these. * highfive: Make MPI variant default to true
2017-05-10Add latest version of PGI compilers (#4186)Adam J. Stewart1-5/+6
* Add latest version of PGI compilers * Prepend, don't overwrite
2017-05-10py-flask version updates, remote switch (#4166)Stephen McDowell1-1/+2
* version updates, remote switch * trim versions to original and most recent * proper url discovered and tested
2017-05-10enable cuda support for suite-sparse (#4163)Stephen McDowell1-14/+14
* enable cuda support for suite-sparse * do not use spec.satisfies * cuda restructure, give clearer comment of why * str format compatibility * flake8 checks
2017-05-09Add a new package for ExtUtils::MakeMaker (#4179)Adam J. Stewart1-0/+38
2017-05-09Fix newline character in GCC package (#4181)Adam J. Stewart1-1/+1
* Fix newline character in GCC package * Remove the newline completely
2017-05-09Adding FASTMath uber package and missing FASTMath packages (#4120)Mark C. Miller10-3/+477
* adding 0.5.1 and variant for uint8 bit stream word type * Revisions as per davydden * fixing style (flake8) issues * - switched to derive from MakefilePackage - fixed typo in variant check - Confirmed installs correctly with bswtuint8 variant * added build method; changed zfp_incdir to incdir * * Adding uber fastmath package to support 'spack install fastmath' * Adding dims variant boxlib to control compile-time spatial dimension count * Explicitly disabling many parts of moab to get lib to build. Don't need tools yet. * Add logic to spack/setup-env to not refer to $SYS_TYPE if its not defined. * adding mesquite package * * Added Chombo (still working on Fortran name mangling) * Made mesquite depend on mpi * Fixed use of boxlib's dims numerical variant * adding PUMI * flake8 compliance * adding phasta * fixing flake8 issues * undue $SYS_TYPE protection change * fixing install step for fastmath uber package; resolve issues requested by adamjstewart in PR * revisions as per adamjstewart * re-enabling trilinos and phasta dependencies * all changes requested modulu values= and assert statement * fixing cmake_args usage in pumi; fixing lib installs for chombo * first pass at numerical variant * fixing dims variant as per @adamjstewart * fixing func/var name collision * fixing means of disabling -Werror * fix name collision for cmake_args var/func * fixing chombo homepage/url; make FASTMath use chombo#3.2; remove extraneous comment about boxlib dim * remove dummy fastmath package; switch to @BarrySmith soln for install of dummy bundle * fix flake8 import os issue * remove extraneous comment * adding url for fastmath scidac site * final fixes as per @adamjstewart * adding 1 dims option for boxlib * switching make(all) to gmake(all)
2017-05-09Add latest versions of Intel compiler (#4184)Adam J. Stewart2-0/+8
2017-05-09Make openmpi package defn more robust (#4183)George Hartzell1-0/+2
Make openmpi handle bad ibv_devices return statuses without bailing out completely. See #4162 for background.
2017-05-09ncurses: Always build tools (#4174)Erik Schnetter1-1/+0
Otherwise, the install can fail if the system-provided `tic` binary is too old.
2017-05-09simulationio: Declare dependency on the HDF5 C++ bindings (#4177)Erik Schnetter1-0/+1
2017-05-09qthreads: Convert to AutoTools package (#4176)Erik Schnetter1-8/+8
2017-05-09funhpc: Update to version 1.3 (#4170)Erik Schnetter1-3/+5
Also use a Spack-provided GoogleTest.
2017-05-09gdbm: Declare readline dependency (#4171)Erik Schnetter1-0/+2
2017-05-09cp2k: fixed compilation issues for intel stackMassimiliano Culpo3-24/+81
Added DFLAGS to the `make.inc` file being written. These macros are also added to the language specific variables like CFLAGS, CXXFLAGS and FCFLAGS. Changed `spec.satisfies('foo')` with `'foo' in spec` in `intel-mkl`, see #4135. Added a basic build interface to `intel-mpi`.
2017-05-08Add GCC 7 (#4144)Adam J. Stewart4-52/+210
* Add GCC 7 * Allow users to build subset of GCC compilers with multi-value variant. * Add comment explaining what 'all' actually means * More specific golang support * Only require Zip when building Java * Comment out provide directives that don't currently work * Add Ada support * Use conflicts directive * Fix joining of languages * Need special flag to build jit * Explicitly declare GNAT download extension * Import tty, update lib64 to lib * BRIG and Go are not supported on macOS * Simplify formatting and imports * JIT patch required for newer versions as well
2017-05-08qt: add 5.8.0 which builds on Sierra with clang 8.1.0 (#4109)Denis Davydov3-2/+50
* qt: add 5.8.0 which builds on Sierra with clang 8.1.0 * enable parallel build, add freetype dependency * minor * minor
2017-05-08Merge pull request #4145 from scheibelp/features/temporary-no-python-for-libxcbscheibelp2-2/+4
Remove python dependency for libxcb and xcbproto
2017-05-07Paramiko python extensions + his deps and other related extensions (#4158)Luigi Calori7-0/+272
* adding paramiko and missing dependencies, setup to work with #2548 * adding other deps for paramiko * fix flake8 errors * removed spurious add * address suggestion for proper dependencies * fix cryptography deps * remove FIXME comments and commented depends lines
2017-05-07Added scala package (#67)nvarini1-0/+50
2017-05-06gmp: switch to download directly from GNU (#4152)Adam J. Stewart1-1/+1
2017-05-06mpfr: switch to more reliable URL (#4139)Adam J. Stewart1-2/+3
* Add list_url to mpfr * Switch to download directly from GNU * http -> https
2017-05-06Updating bamtools to include a dependency for zlib. (#4031)Barry Britt1-8/+9
* Updating bamtools to include a dependency for zlib. In a standard compile, bamtools will fail if zlib headers are not installed on the target machine. In order to maintain compatibility with all systems -- and since zlib is included already as a dependency for cmake -- this patch adds zlib as a link dependency for the bamtools package. * Modified cmake rpath include. Bamtools has a non-standard library location, so we need to append $prefix/lib/bamtools to the rpath. Not sure there's a better way to do this... * Fixing syntax error in package.py Fixed a non-terminated parenthesis on line 46. * Updated bamtools to be a CMakePackage Removed extraneous code, and altered the package to extend cmake_args including the non-standard library location. * UpRemoving cmake dependency and removing blank line from end of file * Updates to cmake_args. Removed the duplicate definition of std_cmake_args in favor of simply overriding the CMAKE_INSTALL_RPATH variable that is provided. This should allow the package to be linked correctly to itself.
2017-05-06Update zlib to work with other compilers (#4088)Matthew Scott Krafczyk2-0/+15
* Fix -include issue with intel and pgi in zlib MERGE CANDIDATE * Patch zlib to compiler with the cray compiler suite.
2017-05-05Add info for perl@5.22.1 (#4147)George Hartzell1-0/+1
What the user wants, the user gets....
2017-05-05Add latest version of curl (#4140)Adam J. Stewart1-1/+2
2017-05-05Python 3 doesn't have iteritems, use items (#4143)Adam J. Stewart3-5/+5
2017-05-05Add latest version of Lmod (#4141)Adam J. Stewart1-1/+2
2017-05-05Remove python dependency for libxcb and xcbprotoPeter Josef Scheibel2-2/+4
python+tk will not build because it depends (indirectly) on python~tk via libxcb. There are efforts to allow multiple instances of a package to concretize together but they are ongoing so in the meantime this comments out the dependencies and adds TODOs
2017-05-05Add info for jdk@8u73 (#4137)George Hartzell1-3/+6
* Fix ordering of versions (proper!) * Add url/digest for jdk@8u73
2017-05-05Add OpenCV 3.2.0 checksum (#4138)Todd Gamblin1-0/+1
2017-05-05Add info for r@3.3.3 (#4128)George Hartzell1-0/+1
2017-05-04SV variants are evaluated correctly in "when=" (#4118)Massimiliano Culpo2-1/+11
* SV variants are evaluated correctly in `when=` statements fixes #4113 The problem here was tricky: ```python spec.satisfies(other) ``` changes already the MV variants in others into SV variants (where necessary) if spec is concrete. If it is not concrete it does nothing because we may be acting at a pure syntactical level. When evaluating a `when=` keyword spec is for sure not concrete as it is in the middle of the concretization process. In this case we have to trigger manually the substitution in other to not end up comparing a MV variant "foo=bar" to a SV variant "foo=bar" and having False in return. Which is wrong. * sv variants: improved error message for typos in "when=" statements
2017-05-04variants: fixed packages reported by @adamjstewart in #4098 (#4105)Massimiliano Culpo5-33/+85
2017-05-04patch sqlite to work around macro definition (#4117)Gregory Lee2-0/+19
2017-05-03Update py-beautifulsoup4 (#4089)Matthew Scott Krafczyk1-4/+3
* Update py-beautifulsoup4 * Change beautifulsoup4 url to pypi.io url.
2017-05-03building wget depends on perl > 5.12.0 (#4087)Matthew Scott Krafczyk1-0/+1
* building wget depends on perl > 5.12.0 * Remove extra parenthesis
2017-05-03hdf5: updated version (#4108)Massimiliano Culpo1-0/+1
2017-05-03spack: no stacktrace if not in debug mode + fix emacs variant (#4098)Massimiliano Culpo1-6/+7
* spack: no stacktrace if not in debug mode + fix emacs variant * emacs: removed dead code
2017-05-02Add the py-dryscrape package (#4094)Matthew Scott Krafczyk1-0/+41
* Add the py-dryscrape package * Adjust dependencies and change development to develop
2017-05-02Update the py-lxml package (#4090)Matthew Scott Krafczyk1-0/+4
2017-05-02Add findutils package (#4091)Matthew Scott Krafczyk1-0/+53
2017-05-02Add the py-webkit-server package (#4092)Matthew Scott Krafczyk1-0/+35
* Add the py-webkit-server package * Change development to develop
2017-05-02Add the py-xvfbwrapper package (#4093)Matthew Scott Krafczyk1-0/+37
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