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2021-06-08singularity: add singularityce fork (#24201)Vanessasaurus3-139/+182
Since the two packages share a common history, the installation procedure has been factored into a common base class. Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-06-08[umpire] Fix missing header (#24198)Teodor Nikolov2-0/+13
2021-06-08Python: fix +tkinter+tix support (#23980)Adam J. Stewart5-79/+203
* Tcl: fix TCLLIBPATH * Fix TCL|TK|TIX_LIBRARY paths * Fix TCL_LIBRARY, no tcl8.6 subdir * Don't rely on os.listdirs sorting For tcl and tk, we also install the source directory, so there are two init.tcl and tk.tcl locations. We want the one in lib/lib64, which should come before the one in share. * Add more patches * Fix dylib on macOS * Tk: add smoke tests * Tix: add smoke test
2021-06-08ASP-based solver: reordered low priority optimization criteria (#24184)Massimiliano Culpo3-0/+28
Minimizing compiler mismatches in the DAG and preferring newer versions of packages are now higher priority than trying to use as many default values as possible in multi-valued variants.
2021-06-08osu-micro-benchmarks: new version 5.7.1 (#23590)Robert Mijakovic1-0/+6
2021-06-08Update stand-alone tests to use test stage work directory; also added ↵Tamara Dahlgren1-14/+25
expected ctest output (#24191)
2021-06-08gatk: make r a variant (#24189)Glenn Johnson1-1/+12
According to the docs, r is needed for plotting, but plotting is untested. In addition, the specific version requirement of java for gatk could lead to multiple installations of r being triggered in an environment. That might cause people to have to be deliberate about java in a deployment. All in all, it seems that r is better as a variant for gatk.
2021-06-08Changes for ufl and basix (#24187)Chris Richardson2-2/+2
2021-06-08biobambam2: update stand-alone tests to use test stage work directory (#24111)Tamara Dahlgren1-1/+4
2021-06-07pkgconf: disable check due to missing dependencies (#24168)Valentin Volkl1-0/+6
2021-06-07delphes: add v3.5.0 (#24101)Valentin Volkl1-3/+2
2021-06-07Update stand-alone tests to use test stage work directory (#24110)Tamara Dahlgren1-20/+29
2021-06-07mpich: fix constraints in provides directives (#24176)Harmen Stoppels1-3/+5
2021-06-07netdata: add v1.31.0 (#24158)Michael Kuhn1-0/+11
This also adds some missing dependencies for core functionality.
2021-06-07r-rpostgres: add new package (#22442)Glenn Johnson1-0/+30
2021-06-07r-rmariadb: remove no longer needed patch (#24171)Glenn Johnson2-15/+2
Since PR #22873 was merged, the configure patch for r-rmariadb is no longer needed. Also added comment regarding configure arguments.
2021-06-07Add int64 back for hypre in nalu-wind (#24140)psakievich1-2/+2
To concretize the entire exawind environment together we need `hypre` to be built with the same flags for `nalu-wind` and `amr-wind`. @jrood-nrel
2021-06-07axl: Don't deprecate v0.3.0 as it's still actively required by veloc (#24179)Chuck Atkins1-1/+1
2021-06-07AMD ROCm release 4.2.0: bump up mivisionx version and add gtk option to ↵arjun-raj-kuppala1-8/+16
opencv (#23881) Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-06-07Revert "Bootstrap with -O3 in cmake (#23147)" (#24174)Harmen Stoppels1-2/+0
This reverts commit fef05621a77ee8b62b318370e1ec7bf39502eb7c.
2021-06-06arborx: enable trilinos 13+ (#24153)Luca Heltai1-2/+1
2021-06-06py-radiant-mlhub: add new package (#24167)Adam J. Stewart1-0/+24
2021-06-06NCCL: add new versions (#24155)Adam J. Stewart1-2/+4
2021-06-06axom: don't require hdf5~shared (#24144)Peter Scheibel1-1/+1
2021-06-06dealii: add support for arborx (#24154)Luca Heltai1-2/+6
2021-06-06darshan-runtime: add SGE scheduler (#24160)Glenn Johnson1-3/+9
* Set job_id for SGE in darshan-runtime package * Use a multi value variant for scheduler Only one scheduler can be selected so make the variant multi valued and set multi=False.
2021-06-06py-pystac: add new package (#24166)Adam J. Stewart1-0/+18
2021-06-06py-tqdm: add version 4.56.2 (#24165)Adam J. Stewart1-0/+1
2021-06-06Add Go 1.16.5 and 1.15.13 (#24170)Paul1-0/+2
2021-06-05veloc: The axl dependency had an API change in 0.4.0 that breaks veloc (#24157)Chuck Atkins1-1/+1
2021-06-05GMT: add v6.2.0 (#24164)Adam J. Stewart1-0/+2
2021-06-05hdf-eos5: Fix issue when linking against hdf5+szip (#23411) (#23412)Tom Payerle1-1/+6
* hdf-eos5: Fix issue when linking against hdf5+szip (#23411) Should fix issue #23411 when linking against hdf5+szip Also fix bug if hdf5 does not depend on zlib Reluctantly added payerle as a maintainer
2021-06-04py-warpx: 21.06 (#24152)Axel Huebl3-3/+8
2021-06-04[py-cvxpy]: Add new version, fix depends_on versions (#24147)Tom Payerle1-2/+7
Added version 1.1.13 Fixed versions for dependencies based on README.md for package In particular: * versions 1.1.x require python@3, at least 3.4 and for 1.1.13 at least 3.6 * py-osqp had been pinned to version 0.4.1, but README.md either shows no version restriction, of 0.4.1 and higher * @1.1.13 requires at least 1.1.6 of py-scs * I am assuming since 1.1.x is python@3 only, py-six no longer required (it was not explicitly showing up in README.md for these versions)
2021-06-04tk: fix url for patch (#24146)Manuela Kuhn1-1/+1
2021-06-04New package: py-python3-xlib (#24139)Jen Herting1-0/+16
* [py-python3-xlib] created template * [py-python3-xlib] requires python3 * [py-python3-xlib] Final cleanup - added homepage - added description - removed fixmes * [py-python3-xlib] added homepage * [py-python3-xlib] removing homepage entirely
2021-06-04libceed: Update the hip-related variant (#24142)Tamara Dahlgren1-1/+1
2021-06-04opencv: Adding gtk variant (#23937)arjun-raj-kuppala1-1/+5
2021-06-04py-pyprecice: Add version 2.2.0.2 and 2.2.1.1 (#24138)ajaust1-1/+4
* add versions 2.2.0.2 and 2.2.1.1 * Add maintainer Added Ishaan as additional maintainer as he is also maintainer of the Python bindings * add new major precice version as dependency
2021-06-04Update stand-alone tests to use test stage work directory (#24130)Tamara Dahlgren1-12/+20
2021-06-04gengeo: new package (#24126)Desmond Orton1-0/+45
2021-06-04libbson, mongo-c-driver: add v1.17.6 (#24134)Michael Kuhn2-0/+2
2021-06-04m4: secure_snprintf.patch is no longer needed for 1.4.19 (#24113)Adam J. Stewart1-4/+4
2021-06-03New package: py-ibm-watson (#24115)Jen Herting1-0/+22
* [py-ibm-watson] created template * [py-ibm-watson] added dependencies * [py-ibm-watson] Final cleanup - added homepage - added description - removed fixmes
2021-06-04formetis: Update stand-alone tests to use test stage work directory (#24133)Tamara Dahlgren1-12/+22
2021-06-04formetis: correct the sha256 (#24131)Tamara Dahlgren1-1/+1
2021-06-03New package: py-ibm-cloud-sdk-core (#24114)Jen Herting1-0/+24
* [py-ibm-cloud-sdk-core] created template * [py-ibm-cloud-sdk-core] added dependencies * [py-ibm-cloud-sdk-core] set minimum python version * [py-ibm-cloud-sdk-core] added version 3.10.0 * [py-ibm-cloud-sdk-core] Final Cleanup - added homepage - added description - removed fixmes
2021-06-03New package: py-haphpipe (#23769)Desmond Orton1-0/+49
* New Package:py-haphpipe@1.0.3 * removed llvm restrict. & changed freebayes * Style fix * Removed pip, wheel, added url for deps list * used proper gsutil naming Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * url src for deps, samtools fix Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-06-03Julia zen patch (#24119)Tom Payerle1-1/+3
Add LLVM-style CPU name for 'zen' Map zen => znver1 Fix checksum for @1.5.4
2021-06-03CEED v4.0 release (#22735)Veselin Dobrev15-111/+503
* petsc: add hip variant * libceed: add 0.8, disable occa by default, and let autodetect AVX Disabling OCCA because backend updates did not make this release and there are some known bugs so most users won't have reason to use OCCA. https://github.com/CEED/libCEED/pull/688 * WIP: ceed: 4.0 release * MFEM package updates (#19748) * MFEM package updates * mfem: flake8 * [mfem] Various fixes and tweaks. [arpack-ng] Add a patch to fix building with IBM XL Fortran. [libceed] Fix building with IBM XL C/C++. [pumi] Add C++11 flag for version 2.2.3. * [mfem] Fix the shared CUDA build. Reported by: @MPhysXDev * [mfem] Fix a TODO item * [mfem] Tweak the AmgX dependencies * [suite-sparse] Fix the version of the mpfr dependency * MFEM: add initial HIP support using the ROCmPackage. * MFEM: add 'slepc' variant. * MFEM: update the patch for v4.2 for SLEPc. * mfem: apply 'mfem-4.2-slepc.patch' just to v4.2. * ceed: apply 'spack style' * [mfem] Add a patch for mfem v4.2 to work with petsc v3.15.0. [laghos] Add laghos version 3.1 based on the latest commit in the repository; this version works with mfem v4.2. [ceed] For ceed v4.0 use laghos v3.1. * [libceed] Explicitly set 'CC_VENDOR=icc' when using 'intel' compiler. * [mfem] Allow pumi >= 2.2.3 with mfem >= 4.2.0. [ceed] Use pumi v2.2.5 with ceed v4.0.0. * [ceed] Explicitly use occa v1.1.0 with ceed v4.0.0. Use mfem@4.2.0+rocm with ceed@4.0.0+mfem+hip. * [ceed] Add NekRS v21 as a dependency for ceed v4.0.0. * [ceed] Fix NekRS version: 21 --> 21.0 * [ceed] Propagate +cuda variant to petsc for ceed v4.0. * [mfem] Propagate '+rocm' variant to some other packages. * [ceed] Use +rocm variant of nekrs instead of +hip. * [ceed] Do not enable magma with ceed@4.0.0+hip. * [libceed] Fix hip build with libceed@0.8. * [laghos] For v3.1, use the release .tar.gz file instead of commit. * Remove cuda & hip variants as they are inherited * [ceed] Remove comments and FIXMEs about 'magma+hip'. * [ceed] [libceed] Remove TODOs about occa + hip. * libceed: use ROCmPackage and +rocm * petsc: use ROCmPackage for HIP * libceed, petsc: use CudaPackage * ceed: forward cuda_arch and amdgpu_target * [mfem] Use Spack's CudaPackage as a base class; as a result, 'cuda_arch' values should not include the 'sm_' prefix. Also, propagate 'cuda_arch' and 'amdgpu_target' variants to enabled dependencies. * petsc: variant is +rocm, package name is hip Co-authored-by: Jed Brown <jed@jedbrown.org> Co-authored-by: Thilina Rathnayake <thilinarmtb@gmail.com>
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