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2018-10-25Package VisIt: updated visit package (#9433)dorier1-14/+46
* updated visit package * make hdf5 and silo conflict with ~gui variant * Changed parallel => mpi and quotes in description * Corrected +mpi variant in VisIt package The previous commit introduced a bug (+parallel variant wasn't renamed +mpi), and the +mpi variant wasn't True by default. This is corrected.
2018-10-25spdlog: add new versions (#9636)Federico Ficarelli1-0/+4
2018-10-25git: add new version 2.19.1 (#9637)Matthias Diener1-0/+5
2018-10-24Add pic variants to tioga, openfast, nalu-wind, and nalu. (#9560)Jon Rood4-4/+20
2018-10-24py-pyarrow: new package (#9416)Matthias Wolf2-0/+46
arrow: add missing dependency for python build The Parquet library moved into the Arrow organisation, hence add a parquet flavor and adapt dependencies.
2018-10-24Warpx: non-conditional dependency on MPI (#9587)Dave1-1/+1
2018-10-24New package: Damaris (#9601)dorier1-0/+52
2018-10-24flux-core & flux-sched: update versions and dependencies, fix git tags (#9610)Stephen Herbein2-6/+19
* flux: ensure git tags are always available previous `--unshallow` would only run when `--depth 0` was used. If 1--single-branch` was used, then the `.git/shallow` file would not exist and `--unshallow` would not work. add v0.6.0 and update dependencies accordingly update dependencies to match latest flux versions adds support for python 3 increases precision of czmq version required for older flux versions adds new lz4 dependency
2018-10-22pumi: add version 2.2.0 (#9606)Cameron Smith1-0/+1
2018-10-22added stat version 4.0.1 (#9607)Gregory Lee2-6/+9
* Add stat version 4.0.1 * stat 4.0.1: requires py-xdot * stat versions at or above 4.0.0 dont require python 2 (it still requires python but can build with 2 or 3) * stat versions at or above 4.0.0 dont require py-pygtk and py-enum34 * Replace py-xdot version 0.9.1 with 1.0 * py-xdot: use lib directory vs. lib64 for atk dependency
2018-10-22plasma: add 18.10.0 and fix URL (#9608)Satish Balay1-1/+2
2018-10-22hypre: update to version 2.15.1 (#9602)Satish Balay1-0/+1
2018-10-22sundials: update to version 3.2.1 (#9603)Satish Balay1-1/+2
2018-10-22PLASMA: add version 18.9.0 (w/CMake) (#9489)Piotr Luszczek2-55/+49
* Add version 18.9.0 (w/CMake) * Add version dependent install methods to handle transition from Make-based package (17.1) to CMake-based package, using the NEST package as an example * Remove unnecessary build_targets method for older Make-based version * Don't retrieve just the C/Fortran interfaces for netlib-lapack - blas/lapack libs are now handled the same for all implementations * Remove netlib-lapack detection patch
2018-10-22Update STRUMPACK package: (#9580)Pieter Ghysels1-40/+26
* add new version 3.1.0 * add conflict for parmetis without mpi * strumpack >= 3.1.0 uses -DTPL_ENABLE_<package> instead of -DSTRUMPACK_USE_<package> * require cmake at least 3.2
2018-10-22py-gtk needs to build with python@2.7 and also requires atk, so the atk ↵Peter Scheibel1-5/+0
python dependency cannot be unconditionally constrained to @3: (#9596)
2018-10-19PMIX: replace md5 hash with sha256 for recent versions (#9585)Daniel Topa1-10/+6
2018-10-19plumed: libmatheval support (#9586)Ricardo Silva3-1/+10
* plumed: add libmatheval dependency (used by the 'function' module) * guile: add variant to build with threads interface * libmatheval: add flex dependency
2018-10-19new package: trimal (starting at 1.4.1) (#9592)Justin Stanley1-0/+25
2018-10-19new package: lastz (starting at 1.04.00) (#9593)Justin Stanley1-0/+18
2018-10-19bcftools: add version 1.9 (#9595)Justin Stanley1-0/+2
2018-10-19New package: DFT-FE (#9197)Ricardo Silva1-0/+65
2018-10-19new package: dbcsr (#9491)Denis Davydov2-0/+55
Also add its dependency, py-fypp
2018-10-19jdk: added version 11.0.1 (#9583)Justin Stanley1-0/+3
2018-10-19warpx: new package (#9584)Dave1-0/+78
2018-10-18r-biom-utils: changed MD5 to SHA, added list_url (#9539)Dan Han1-1/+2
2018-10-18binutils: add older version 2.25.1 (#9579)sknigh1-0/+1
Added version available in RHEL/Centos 7
2018-10-18blaze package: add versions 3.3 and 3.4 (#9546)Jordan Moxon1-1/+3
2018-10-18r-matr and r-callr: add new versions, list_urls (#9562)Dan Han2-1/+5
2018-10-18qt4: Patch configure to allow webkit with recent gcc (#9264)Neil Flood2-0/+26
2018-10-18llvm: rename "trunk" version to "develop" (#9320)Geoffrey Oxberry1-2/+2
2018-10-18Update samrai 2.4.4 (#9311)David Wells1-16/+22
* Add support for samrai+silo. * Add patch for SAMRAI 2.4.4
2018-10-18r-rmarkdown: add r-catools dependency (#9470)Justin Stanley1-0/+1
2018-10-18parquet: add -fPIC option (#9367)Matthias Wolf1-0/+8
This adds a pic variant and also exports all compiler flags as CMake arguments
2018-10-18qt: addversion 5.11.2 (#9555)Michael Kuhn1-0/+1
2018-10-18spark: set JAVA_HOME for hadoop CLASSPATH fetching (#9439)Matt Belhorn1-0/+1
Sets the `JAVA_HOME` in the `hadoop` subprocess called during `spark.setup_environment`.
2018-10-18new package: trinotate (starting at 3.1.1) (#9471)Justin Stanley1-0/+42
2018-10-18byobu: add new version 5.127 (#9529)Matthias Diener1-0/+1
2018-10-18ranimation: added list_url (#9538)Dan Han1-0/+1
2018-10-18freetype: Add version 2.9.1 (#9551)Michael Kuhn1-0/+1
2018-10-18add pumi version docstring (#9577)Cameron Smith1-0/+6
2018-10-18py-seaborn: add version 0.9.0 (#9553)Matthias Wolf1-0/+1
2018-10-18py-hdfs: new package (#9575)Matthias Wolf1-0/+19
2018-10-18lbann: add aluminum dependency (#9523)Brian Van Essen5-16/+107
* Added support for the Aluminum library to LBANN and Hydrogen. Also fixed several bugs in the grouping of dependencies of both packages. * Updated the conduit package to have the proper dependency on the python variant. * Added new versions for NCCL * Fixed a bug in how Hydrogen set the path for OpenBLAS. * Added support for conduit in LBANN.
2018-10-18vtk: add support for Xdmf IO. (#9510)Ruben Di Battista4-8/+87
* vtk: add variants for Xdmf IO support, ffmpeg support, and MPI * vtk: depends on boost when Xdmf support is enabled * vtk: add backported patch for python3.7 * vtk: New policy only for cmake >= 3.12 * mesa: add py-argparse dependency (for build) * lz4: use MOREFLAGS instead of LIBS to add -lrt
2018-10-18Add new python package: hepdata-validator (#9547)Javier Cervantes1-0/+22
* Add new python package: hepdata-validator * Update to new license header
2018-10-17Revert "py-hdfs: new package (#9421)" (#9572)Levi Baber1-38/+0
This reverts commit 5a7d0c458b1034de22a7055276b2398167f5e3da.
2018-10-18py-numpy: update to version 1.15.2 (#9535)Leonhard Reichenbach1-0/+1
2018-10-18scalasca: add 2.4 (#9556)Michael Kuhn1-2/+10
scalasca actually requires cubew, not the full cube bundle. However, cubew@4.4 causes the build of previous versions to fail because there is no cube-config script anymore.
2018-10-17py-hdfs: new package (#9421)Matthias Wolf1-0/+38
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