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2022-05-05Enable PyTorch 1.10.x to build on Power systems (#30494)Brian Van Essen1-0/+18
* Use patches from IBM's Open CE project to enable PyTorch to build on Power systems. Cherry-pick a patch to allow earlier versions of PyTorch to build with CUDA 11.4. * Update var/spack/repos/builtin/packages/py-torch/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-05package audit: ensure stand-alone test method not include in build-phase ↵Tamara Dahlgren1-2/+2
testing (#30352)
2022-05-05clingo: add v5.5.2 (#30495)Massimiliano Culpo1-12/+14
* clingo add v5.5.2 * Unify dependencies for @spack and @master
2022-05-05Update totalview package.py with new version and maintainer (#30341)David1-3/+22
* Update totalview package.py with new version and maintainer * Update totalview/package.py version order Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-05Bug fix for mesa-glu: if gl is provided by mesa, need to specify argument to ↵Dom Heinzeller1-0/+6
./configure (#30082)
2022-05-05octopus: update to 11.4 and add tests (#30321)Hans Fangohr3-30/+245
* octopus: adding versions up to 11.4 * octopus: add smoke tests * octopus: add necessary flags for gcc@10 * octopus: update to compilation and dependencies * octopus: adding new variants * octopus: remove 'poke' (as this poke is not in spack [yet]) * octopus: allow compilation from git repo develop branch * octopus: adapt to spack style requirements * octopus: add maintainer * octopus: make tests after install optional Thank you @tldahlgren * octopus: follow recommended practice for test input data Move the two configuration files we use for smoke tests into `test` subdirectory. Thanks @tldahlgren. * Adding maintainer with their agreement by email * octopus: reduce duplication of flags - part of code review * octopus: https is preferred over http * octopus: remove .99 from versioning information Thanks to https://github.com/spack/spack/pull/26402, we can drop the "2:3.99" notation when we mean all versions 2.x and 3.x Examples: https://github.com/spack/spack/commit/b9e72557e8b52b63244500f226afda0efe798df2#diff-b8373d30b3a141c495c2281273ee6184fc513413142afaf2adac1f406cd6b0d7 (from review) * octopus: args.extend([x]) -> args.append(x) (hint from review)
2022-05-05yaksa: Add support for cuda_arch variants (#30471)Ken Raffenetti1-0/+5
2022-05-05ucx: overhaul package recipe (#30215)Harmen Stoppels1-138/+108
- hyphens to underscore in variant names (e.g. `~ib_hw_tm` instead of `~ib-hw-tm`) - disable docs, disable go, drop the unused `doc` variant - `+static +shared` => `libs=static,shared` - `vfs` support (add libfuse@3: dep) - fix `backtrace_detail` for UCX 1.12+ (`--enable-backtrace-detail` => `--with-bfd`) - group variants and sort
2022-05-05baurmc: add new package (#30245)Valentin Volkl1-0/+43
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-05git: adding subtree support, post-install step, reordered deps (#30400)Jennifer Green1-6/+18
2022-05-05LAPACK: add API compatibility versions (#29828)Adam J. Stewart6-1/+16
2022-05-05rnaz: add version 2.1.1 and git repository to newest version. (#30349)dlkuehn1-0/+7
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-05trimmomatic: adding more flexible java dep (#30488)snehring1-1/+2
2022-05-05flatbufffers: patches are in v2.0.0 (#30492)Wouter Deconinck1-2/+2
2022-05-05spectre: add v2022.05.05 (#30493)SXS Bot1-0/+1
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2022-05-04qt: fix ~opengl and use_spack_dep (#30487)Seth R. Johnson1-13/+16
2022-05-04UPC++: minor packaging improvements (#30482)Dan Bonachea1-0/+36
* upcxx: Add `spack external find` support * upcxx: Minor tweaks to Shasta support
2022-05-04Add scitokens-cpp recipe and also as a variant for xrootd (#30362)Andrea Valenzuela2-0/+33
* Add scitokens-cpp recipe * Add scitokens-cpp variant in xrootd * Fix typo * Fix flake8 style errors * Update license date Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-04Fix professor recipe (#30002)iarspider1-1/+13
* [WIP] Cleanup professor dependencies * Add dependency on ROOT * Remove direct dependency on wxwidgets * `prof-I` tool requires matplotlib with wxwidgets backend, made that optional * Update package.py * Update package.py (#38) * Update package.py * Update package.py
2022-05-04Update gtk-doc depends for tce findings (#30337)David1-1/+2
gtk-doc can call pkg-config when used at runtime, so pkgconfig needs to be a runtime requirement. itstool needs to be a build-time requirement.
2022-05-04gxsview: vtk9 no longer builds libvtkjpeg... (#30340)Olivier Cessenat2-0/+28
2022-05-04Add checksum for py-prompt-toolkit@3.0.29 (#30330)Andrea Valenzuela1-0/+1
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-05-04curl: tls=mbedtls requires fPIC (#30447)Carlos Bederián1-2/+2
2022-05-04gatk: updating and expanding java dependency (#30476)snehring1-1/+4
2022-05-04Python package: add backup BINDIR setting (#30408)Adam J. Stewart1-0/+1
2022-05-04qt: Assimp dependency specificationa is more nuanced (#30460)Chuck Atkins2-18/+29
libassimp has been a dependency for all of 5.x but expressing that has varied significantly throughout the 5.x lifecycle: v5.0: qt3d uses internal-only libassimp v5.5: external-only libassimp v5.6: either internal or external libassimp via autodetection v5.9: user-selectable internal-vs-external via -assimp v5.14: additional qtquick3d module uses -assimp v5.15: qtquick3d switches to the -quick3d-assimp option * current bug where the incorrect target is setup
2022-05-04GDAL: add v3.4.3 (#30474)Adam J. Stewart1-0/+1
2022-05-04add package: abacus (#30416)Bitllion1-0/+108
* add pacakge: abacus * rename * fix some style bugs * update package:abacus * fix some style bugs * format code * Delete a line of useless comments * updatee abacus
2022-05-04Add mimalloc package with use in HPX and pika (#30457)Mikael Simberg3-5/+32
* Add mimalloc package * Add mimalloc as allocator option to pika * Add mimalloc as allocator option to hpx * Set git property globally instead of per-version in pika, hpx, and mimalloc packages Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-05-04gpi-2_fix_deps: setup 'gawk' and 'sed' dependencies (#29740)acastanedam1-1/+3
Strictly, `sed` is a `build` and `run` dependency in all gpi-2 versions, whereas `gawk` is a `run` (`build` and `run`) dependency for gpi-2 versions greater or equal (less) than 1.4.0
2022-05-04Add checksum for version 1.1.13 and update dependencies (#30470)Andrea Valenzuela1-1/+3
2022-05-04chameleon: add maintainers information (#30472)fpruvost1-0/+1
2022-05-04pika: Add 0.4.0 release (#30469)Auriane R1-0/+1
2022-05-04Use gccgo to bootstrap go on aarch64 (#30350)Ross Miller2-3/+17
The go-bootstrap package doesn't work on aarch64 platforms, so the only way to build Go is to use gccgo. Also, some versions of gccgo have a bug that prevents them from compiling go (see golang/go#47771), so this patch limits gcc to versions newer than 10.4.0 or 11.3.0. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-04chameleon: add new package (#30368)fpruvost1-0/+97
2022-05-04Add checksum for py-plac@1.3.5 (#30327)Andrea Valenzuela1-0/+1
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-05-04Add checksum for py-networkx@2.7.1 and fix python dependency (#30326)Andrea Valenzuela1-0/+2
Co-authored-by: aandvalenzuela <andrea.valenzuela.ramirez@cern.ch>
2022-05-04mesa: intel needs c99 standard specified under intel. (#30334)Paul Ferrell1-0/+6
2022-05-04maq: adding perl dep, addressing gcc errors (#30312)snehring1-1/+13
2022-05-04namd: place an upper bound on the charmpp dependency version (#30397)lpoirel1-1/+1
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-04WarpX: add v22.05 (#30467)Axel Huebl2-3/+5
Update `warpx` & `py-warpx` to the latest release, `22.05`.
2022-05-04igv: changing to 'all platforms' version. Adding igvtools variant. (#30379)snehring1-11/+18
2022-05-04py-shapely: add v1.8.2 (#30466)Adam J. Stewart1-0/+1
2022-05-03boost: fix v1.78 build with oneapi (#30463)eugeneswalker2-0/+18
2022-05-04autodock-vina: add versions up to v1.2.3, fixes (#30443)Carlos Bederián3-74/+10
* C++ package, use spack_cxx * download from github, add 1.2.x versions * remove patches already present in 1.1.2-boost-new release * specify boost dependencies
2022-05-04paraview: add LANL/TCE used variants for Paraview (#30336)Paul Ferrell1-0/+14
- Added +eyedomelighting - Added +pagosa - Added +fortran - Added pandas dependency and min version
2022-05-03ncl: constrain hdf5 dependency to version 1.10 (#29607)Glenn Johnson1-1/+1
2022-05-03new package: py-pytaridx (#30444)Harsh Bhatia1-0/+24
* new package: pytaridx * fixed copyright year * Update git link Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * added type in python depends * added pypi link * Update package.py * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-04ea-utils: new version, cleanup, and newer gcc compat (#30204)snehring1-8/+30
2022-05-04ParaView: let paraview build its own verdict tpl (#30332)Ethan Stam1-0/+3
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