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2017-11-04add rol variant (#6105)vishalkenchan1-0/+4
2017-11-03r-yapsa: created new package (#6121)Yifan Zhu1-0/+57
2017-11-03r-keggrest: created new package (#6120)Yifan Zhu1-0/+44
2017-11-03r-statmod: Create new package. (#6119)lingnanyuan1-0/+42
2017-11-03r-deseq: Create new package. (#6118)lingnanyuan1-0/+46
2017-11-03r-samr: Create new package. (#6117)lingnanyuan1-0/+37
2017-11-03r-impute: Create new package. (#6116)lingnanyuan1-0/+36
2017-11-03r-altcdfenvs: Create new package. (#6115)lingnanyuan1-0/+43
2017-11-03r-makecdfenv: Create new package. (#6114)lingnanyuan1-0/+44
2017-11-03r-hypergraph: Create new package. (#6113)lingnanyuan1-0/+38
2017-11-03ISAAC 1.3.2 (#6129)Axel Huebl2-3/+6
Add a new release of ISAAC.
2017-11-02aspell: refuse to work with non-global extensionsBen Boeckel1-1/+13
Aspell compiles in the paths it looks for rather than looking relative to its binary location. There are also no environment variables to redirect it other than changing the path to the configuration file it looks at.
2017-11-02perl: support extensions in viewsBen Boeckel1-2/+8
2017-11-02python: extensions support for easy-install.pthOliver Breitwieser1-10/+30
2017-11-02view: test conflicting packages in viewsBen Boeckel2-4/+4
2017-11-02view: test that extension paths existBen Boeckel2-0/+6
2017-11-02extension1: add a second versionBen Boeckel1-0/+1
2017-11-02bdftopcf: require xproto and fontsproto at build time (#6112)Ben Boeckel1-0/+2
These are technically "link" depends of libxfont, but they have no actual libraries. Fixes #5936.
2017-11-02Add package r-reportingtools and update url for its dependencies. (#6071)lingnanyuan4-5/+71
* r-reportingtools: Create new package. * r-go-db: Update url. * r-gseabase: Update url. * r-pfam-db: Update url.
2017-11-02adios: Fix hdf5 and sz dependencies (#6016)Michael Kuhn1-2/+2
- hdf5's +hl variant is required because the build uses libhdf5_hl. - sz is only compatible up to version 1.4.10 because the library has been renamed to libSZ in 1.4.11.
2017-11-02hwloc: add version 1.11.8 (#6099)Brice Goglin1-0/+1
Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2017-11-02arlecore: new package (#6109)Audrey Thoma1-0/+40
2017-11-02gromacs: add develop version (#6098)Christoph Junghans1-0/+1
2017-11-02sundials+hypre depends on hypre (#6075)Adam J. Stewart1-0/+2
2017-11-02the-silver-searcher: add missing dependency (#6095)Denis Davydov1-0/+1
2017-11-02xqilla: Use append instead of extend (#6094)Michael Kuhn1-1/+1
2017-11-01Update candle (#6097)Brian Van Essen1-0/+10
2017-11-01r-getoptlong: created new package (#6069)Yifan Zhu1-0/+42
2017-11-01r-gtrellis: created new package (#6088)Yifan Zhu1-0/+46
2017-11-01LBANN flags and OpenCV variant (#5951)Brian Van Essen3-13/+39
* Fixed the datatype flag in the LBANN package. Fixed where the datatype flag should be set. * Added variant to OpenCV to disable building DNN support * Fixed a bug in how the elemental package tries to find its Fortran library. The current method does not work with Intel compilers. * Added necessary paths for cuDNN and CUB. * Addressed flake8 issues in Elemental package. * Fixed several flake8 errors. Added variant to build with or without support for arbitrary-precision floating point arithmetic. * Added the proper CMake flag when MPFR support is disabled. * Fixed a bug in how the cudnn path was being set when there was no cudnn requested. Also requested that OpenCV is built without eigen support. * Fixed another bug where a dependency may not be there and thus should not be always checked.
2017-11-01lua: Build a shared library (#6008)Michael Kuhn2-0/+77
Patch is inspired by Arch Linux and Homebrew.
2017-11-01r-circlize: new package (#6087)Yifan Zhu1-0/+48
2017-11-01r-alsace: Create new package. (#6064)lingnanyuan1-0/+43
2017-11-01r-globaloptions: new package (#6068)Yifan Zhu1-0/+40
2017-11-01r-affycoretools: Create new package and its dependency r-ff. (#6082)lingnanyuan2-0/+92
* r-ff: Create new package * r-affycoretools: Create new package. * r-ff: update url.
2017-11-01r-agimicrorna: Create new package. (#6083)lingnanyuan1-0/+41
2017-11-01r-complexheatmap: created new package (#6084)Yifan Zhu1-0/+46
2017-11-01r-shape: created new package (#6086)Yifan Zhu1-0/+36
2017-11-01r-pmcmr: new package (#6085)Yifan Zhu1-0/+47
2017-11-01Opencv eigen (#6014)Brian Van Essen1-1/+1
* Added a package for the MDAnalysis toolkit. * Changed dependency for the eigen library to not include support for multiple-precision (arbitrary-precision) floating point arithmetic, since OpenCV does not support these data types. * Fixed incorrect implementation
2017-11-01flux: update flux-core to v0.8.0 (#5914)Mark Grondona3-14/+19
* dockbook: remove update to dependent environment Remove override of setup_dependent_environment in both docbook-xml and docbook-xsl, which seems to generate a warning from spack about "Suspicious requests to set or unset 'XML_CATLOG_FILES' found." * flux: update version/dependencies to 0.8.0 Update flux-core to v0.8.0. Clean up dependencies and remove unneeded extra invocation of ./autogen.sh when building from @master. * flux: modify environment for Lua tests Modify Spack environment to add `./?.lua` to LUA_PATH so that fluxometer.lua can be found by tests during `make check` run from `spack install --tests all flux` * flux: fix broken flux version when on master When building @master with spack, the flux version test from `make check` fails because spack is using a shallow clone. Add a setup section for @master that calls git pull --depth=50 --tags to pull down tags and (hopefully) enough information for git-describe to work properly.
2017-11-01mfem does not use cmake for builds [anymore] - so remove code corresponding ↵Satish Balay1-10/+0
to this dependency. (#6073) This enables mfem build on OSX [with xcode/clang compilers]
2017-10-31MACSio and JSON-CWX packages (#6018)Elsa Gonsiorowski3-0/+167
2017-10-31Preinstall some llvm shared libraries so tblgen will work. (#5988)Patrick Gartung1-10/+17
2017-10-31r-somaticsignatures: created new package (#6065)Yifan Zhu1-0/+53
2017-10-31r-nloptr: Create new package. (#6063)lingnanyuan1-9/+13
2017-10-31r-ptw: Create new package. (#6062)lingnanyuan1-0/+46
2017-10-31r-iso: Create new package. (#6061)lingnanyuan1-0/+36
2017-10-31r-nnls: Create new package. (#6060)lingnanyuan1-0/+37
2017-10-31r-als: Create new package. (#6059)lingnanyuan1-0/+44