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2019-05-07py-scikit-learn: needs setuptools (#11379)Levi Baber1-0/+1
2019-05-07hpcviewer: add version 2019.04 (#11380)Mark W. Krentel1-2/+11
2019-05-07ninja: drop python as a run dep (#11347)Chuck Atkins2-2/+6
* ninja: Make python a build-only dependency * ninja, ninja-fortran: allow the packages to provide eachother
2019-05-07py-pysam: update (#11377)xfzhao1-0/+2
2019-05-07New package: CCfits (#11262)Felix Niederwanger1-0/+22
2019-05-06Mesa should depend_on('glproto') (#11360)George Hartzell2-0/+37
* Mesa should depend_on('glproto') The mesa package refers to `GL/glproto.h`. On systems that don't have the OS packages installed, this leads to failures during the build [e.g. this comment in 01482](https://github.com/spack/spack/pull/10482#issuecomment-488786745). This fixes it. Tested on a minimally provisioned CentOS 7. * Constrain glproto prereq to when +glx * mesa: make glproto a build only dep
2019-05-07SLATE package: fix variant/header errors (#11353)G-Ragghianti1-9/+2
* The 'mkl' variant implementation was not complete and was preventing the package from building, so remove it. * The slate.hh file has moved in the 'develop' version (which is currently the only version of SLATE listed)
2019-05-06FAODEL: Add FAODEL package to spack (#11323)Todd Kordenbrock4-0/+201
* FAODEL: Add FAODEL package to spack FAODEL (Flexible, Asynchronous, Object Data-Exchange Libraries) is a collection of software libraries that are used to implement different data management services on high-performance computing (HPC) platforms. This project is part of the Advanced Technology Development and Mitigation (ATDM) effort for NNSA's ASC program at Sandia National Laboratories. (cherry picked from commit 6afe045d25b5c000b612116a5695aebbec56b61a) * FAODEL: Update FAODEL package Dependencies: set minimum versions for boost, cmake and libfabric Dependencies: add conflict for boost v1.59.0 Patch: add a patch for v1.1803.1 Patch: add a when= for the v1.1811.1 specific patches Compiler: check for C++11 support in gcc (cherry picked from commit fb6ed2b3cf20d7e4fff647cba5a70887a78f627f) * FAODEL: Update FAODEL package * replace previous maintainers with @tkordenbrock and @craigulmer * default to shared libs to meet Spack policy * increase min boost version to 1.60.0 and remove boost 1.59.0 conflict * replace complex version check with conflict for gcc <= 4.8.0 (C++11 support required) * set type=build for cmake * enable googletest for all versions with type=build * enable tests for for all versions except when MPI is disabled * FAODEL: Update FAODEL package * add version v1.1811.2 * limit comment line length
2019-05-07Turbine package: add m4 dependency (#10948)Justin M Wozniak1-0/+1
m4 is a build and run dependency for Turbine: it is used at run time to generate scheduler job files for the workflows.
2019-05-04omega-h package: add version 9.27.0 (#11366)Cameron Smith1-0/+1
2019-05-04py-yt package: add versions 3.5.0, 3.5.1, 4.0 development branch (#11350)Bili Dong1-1/+4
2019-05-04cURL package: add gssapi option (#11344)cedricchevalier191-0/+5
This option allows curl and its dependents (git, ...) to work with proxy using Kerberos authentification.
2019-05-04New package: GMTSAR (#11315)Sinan1-0/+20
2019-05-04Nek5000: Fix CFLAGS and FFLAGS handling (#11339)Thilina Rathnayake1-2/+2
2019-05-04New package: PASTA (#11338)Justin S1-0/+41
2019-05-04rJava package: add version 0.9-11 (#11334)Sinan1-0/+1
2019-05-04BLAST-Plus package: add versions 2.9.0 and 2.8.1 (#11333)Owen Solberg1-0/+2
2019-05-04NETCDF: add version 4.7.0 (#11330)Greg Sjaardema1-0/+1
2019-05-04PARALLEL-NETCDF: add version 1.11.1 (#11329)Greg Sjaardema1-0/+1
2019-05-04GDAL package: add version 2.4.1 (#11328)Sinan1-0/+1
2019-05-04libunistring: added newer versions and patch older ones (#11255)Leonhard Reichenbach2-2/+28
* Add versions 0.9.10, 0.9.9, and 0.9.8 * Port a change in 0.9.10 to earlier versions as a patch
2019-05-03arm-forge: add all available versions (#11198)Federico Ficarelli2-45/+118
* arm-forge: add all available versions * Add TODO for the version hell * Fix linting Looks like 'black' formatter isn't Spack friendly * Fix versions ordering * Remove obsolete package (allinea-forge → arm-forge)
2019-05-03range-v3: New versions 0.3.7, 0.4.0, 0.5.0. (#11358)Chris Green1-0/+3
2019-05-03libxml2: New version 2.9.9. (#11357)Chris Green1-0/+1
2019-05-03cppunit: New version 1.14.0. (#11359)Chris Green1-0/+1
2019-05-03add BMI package (#11310)Phil Carns2-1/+26
- also enable optional dependency in Mercury
2019-05-03QMCPACK: compiler flags and mpi wrapper updates (#11326)Nichols A. Romero1-18/+21
* Set mpi compiler wrappers using CC/etc. variables as recommended at https://spack.readthedocs.io/en/latest/packaging_guide.html#compiler-wrappers rather than setting CMake variables like -DCMAKE_C_COMPILER * Use convenience functionality provided by inherited CMakePackage to export all compiler flags as CMake options
2019-05-03py-espresso: added v4.0.2Christoph Junghans1-0/+1
2019-05-03grass package: use url_for_version, add versions (#11324)Patrick Schratz1-1/+11
2019-05-03Singularity package: new version, legacy builds, and root permissions (#11094)Vanessasaurus3-21/+179
* Remove old Singularity versions, add version 3.1.1 * Recent versions of Singularity build with go rather than autotools: update dependencies and build logic * Move old Singularity versions to new singularity-legacy package which uses the autotools build system * Some binaries built by Singularity need to be run as root: include a script that the user can run after the Spack Singularity install to change these permissions. * The Singularity go build expects to work with a custom stage directory relative to GOPATH: override the stage phase to create this expected path. * Update Singularity install config to point to Spack-installed makesquashfs dependency
2019-05-02llvm: depend on python only when +python (#11348)Chuck Atkins1-4/+4
Based on the LLVM documentation [1], Python is used to run the automated test suite. Therefore is it always a dependency for LLVM. However, if build without Python (~python), we limit it to a build time dependency. Note that py-lit is not added as a spack dependency even though it is available as a spack package. This is because it is already included in llvm and llvm is difficult to configure using an external py-lit (several CMake variables to set correctly). Additionally, having py-lit as a spack dependency adds Python as a runtime dependency for llvm even though it is not required at runtime. [1] https://llvm.org/docs/GettingStarted.html#requirements
2019-05-03extend Version class so that 2.0 > 1.develop > 1.1 and develop > master > ↵Denis Davydov2-0/+38
head > trunk > 9999 (#1983) * extend Version class so that 2.0 > 1.develop > 1.1 * add concretization tests, with preferences and preferred version. * add master, head, trunk as develop-like versions, develop > master > head > trunk * update documentation on version comparison
2019-05-02LIBXSMM: add version 1.11, update wrapper settings (#11317)Hans Pabst1-17/+11
Remove makefile editing to set compiler wrappers (which was not working) and instead set them as arguments to 'make'.
2019-05-02R: add version 3.6.0Simon Flood1-0/+1
2019-05-02New package: py-pydv (#11313)Daryl W. Grunau1-0/+23
2019-05-02Ginkgo package: update to release 1.0.0 (#11312)tcojean3-28/+14
* Version 1.0.0 was released and the master branch tracks the latest release. * Multiple issues with MacOS have been fixed. The static patch is now unneeded. * Add support for building Ginkgo with the full Block Jacobi performance (compilation takes a long time). * Do not build anything which is not useful for the installation. Namely, documentation, benchmarks, examples and tests.
2019-05-02New package: libpmemobj-cpp (#11309)Phil Carns1-0/+26
2019-05-02python: add versions 3.7.3, 3.5.7, and 3.4.10 (#11300)Felix Mayr1-0/+3
2019-05-01mesa: re-written to new meson build system (#10482)Chuck Atkins15-201/+162
* mesa: re-writen to new meson build system * xorg-server: Remove unneeded mesa dependency * glx: provide the virtual GLX package * Convert most "mesa" dependencies to use virtual gl and glx dependencies * mesa: Switch to always building from the git repo instead of a tarball * Use gl and glx version ranges instead of exact versions * glx: provide a default package * add auto to swr variant * Revert "add auto to swr variant" This reverts commit 2e7cd8a8aca07767c00657d0d09985ddd6306883. * update mesa package to version 19.0 * set +glx by default only when running on linux * fix style issues in geant4 package * remove virtual package "egl"
2019-05-02add PMDK 1.6Phil Carns1-2/+1
- also remove superflous ncurses dependency for PMDK 1.5
2019-05-02trilinos: add variant for ShyLU support (#11294)Kelly (KT) Thompson1-0/+4
2019-05-02ffmpeg package: add aom support (#11210)Sean McGrath2-1/+30
* Add Aom package * Add aom variant to ffmpeg package which controls whether to build with the Aom dependency
2019-05-01Supernova package: add version 2.1.1 (#11285)xfzhao1-3/+6
2019-05-01Add margo package and add rc1 tag for argobots package (#11281)Francois Budin2-0/+51
margo package is a required dependency for unifycr but the package was not available in spack. margo requires a recent version of argobots that has the ABT_SCHED_BASIC_WAIT scheduler (rc1 does while previously available versions of this package in spack did not have it).
2019-05-01veloc package: add version 1.1 and update master dependencies (#11270)Francois Budin1-1/+3
* Add version 1.1 and set it as preferred * Add pdsh as a dependency for `master`
2019-05-01Darshan 3.1.7 and develop versions fpr darshan-runtime and darshan-util (#11269)Francois Budin2-0/+6
* Add version 3.1.7 * Add develop branch (git master)
2019-05-01Lua: Fix unresolved symbols in shared library by linking with libdl.so (#11260)Thomas Gruber1-1/+2
The current lua package.py does not link with libdl.so, so you get unresolved symbols while linking with lua. This PR adds libdl to fix the issue.
2019-05-01openfoam-com package: build without kahip by default (#11259)Greg Becker1-1/+1
Kahip does not build with clang (conflicts('%clang') in kahip package. Because of this, openfoam-com %clang fails concretization. Therefore, this changes the default openfoam-com variant for kahip to False.
2019-05-01CP2K package: add versions and tests, adjust optimization flags (#11263)Tiziano Müller1-3/+20
* Remove -ffast-math optimization flag * Add 'develop' version which points to git repo * Depend on libint for all versions >= 3.0 * Build directory is different for versions >= 7 (including develop) * Add "make test" as post install check
2019-05-01OpenCV: New versions, adjust protobuf dependency (#11243)Jannek Squar1-1/+16
* Add versions 3.4.4 through 4.1.0 and 4.1.0-openvino * Add conflict for gcc version >= 7 when building with +cuda * Later version of protobuf is required for later versions of OpenCV * Explicitly remove protobuf dependency with CMake option when not building with +dnn