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2019-09-17cryptsetup package: dont vendor libuuid in util-linux (#12839)George Hartzell2-2/+10
Fixes #12829 This adds a variant to the util-linux package that controls whether it builds its own libuuid. Variant defaults to True. It enables other packages to choose to get libuuid from the libuuid package instead. This also changes the cryptsetup package to build util-linux with ~libuuid (so it uses an explicitly-Spack-built instance of libuuid instead).
2019-09-16Add py-pycbc package (#12823)Adam J. Stewart1-0/+40
2019-09-16Add py-astropy 2.0.14 (#12816)Adam J. Stewart1-14/+42
2019-09-16Add py-beautifulsoup4 4.8.0 (#12815)Adam J. Stewart1-1/+3
2019-09-16Add py-mpld3 package (#12822)Adam J. Stewart1-0/+21
2019-09-16Add py-asdf package (#12817)Adam J. Stewart1-0/+26
2019-09-16Add py-bintrees package (#12818)Adam J. Stewart1-0/+18
2019-09-16Add py-lscsoft-glue package (#12821)Adam J. Stewart1-0/+23
2019-09-16Add py-jplephem package (#12819)Adam J. Stewart1-0/+19
2019-09-16Add py-ligo-segments package (#12820)Adam J. Stewart1-0/+18
2019-09-16Add py-pyopenssl package (#12824)Adam J. Stewart1-0/+24
2019-09-16Add py-semantic-version package (#12825)Adam J. Stewart1-0/+20
2019-09-16Add py-sortedcontainers package (#12826)Adam J. Stewart1-0/+18
2019-09-16Add py-weave package (#12828)Adam J. Stewart1-0/+24
2019-09-16Add py-soupsieve package (#12827)Adam J. Stewart1-0/+18
2019-09-16Relax Python version constraints on py-html5lib (#12811)Adam J. Stewart1-2/+2
2019-09-16xdmf3: new package (#12778)Chuck Atkins1-0/+44
2019-09-14qt: Fix build with GCC9 for version 4 (#12832)Ruben Di Battista2-0/+68
* qt: Fix build w/ GCC9 for @4: * qt: Fix patch filename and qt version * Fix typo in patch name
2019-09-14flang: build on arm. (#12808)Toyohisa Kameyama1-0/+2
2019-09-13py-bleach package: add version 3.1.0 (#12814)Adam J. Stewart1-4/+5
2019-09-13py-cython package: fix --test (#12813)Adam J. Stewart1-1/+1
Fix bug in string conversion of "make_jobs"
2019-09-13py-emcee package: add version 2.2.1 (#12812)Adam J. Stewart1-1/+2
2019-09-13wcslib package: add version 6.4 (#12810)Adam J. Stewart1-1/+2
2019-09-13Add diamond dependencyGlenn P Johnson1-0/+1
2019-09-13Update braker packageGlenn P Johnson1-6/+33
- add version 2.1.4 - change url to github - add perl dependencies - new version has a new source layout - filter shebang to use spack perl
2019-09-13Fixes for augustus packageGlenn P Johnson1-13/+23
- add missing perl dependency - only filter Makefile if referred to dependency is in the spec - rewrite the shebang line of scripts to use spack perl - remove tabix dependency as tabix and bgzip are part of htslib
2019-09-13Update genemark-et packageGlenn P Johnson1-1/+19
- add version 4.46 - add missing perl dependencies - new version has different source layout - filter shebang to use spack perl
2019-09-13New package: py-pykwalify (#12540)Sinan1-0/+28
2019-09-13preCICE: added versions 1.6.0 and 1.6.1 (#12809)Frédéric Simonis1-0/+2
2019-09-13diamond: added version 0.9.25 (#12805)Glenn Johnson1-0/+1
2019-09-12New package: py-ruamel-yaml (#12543)Sinan1-0/+29
2019-09-12Singularity package: add version 3.4.0 (#12785)Owen Solberg2-3/+22
This version in combination with the included patch can install without root.
2019-09-12New package: cryptsetup (#12762)Owen Solberg2-0/+60
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-09-12add compilation option to sqlite (#12794)Sinan1-0/+5
* add compilation option to sqlite * rename variant * fix bug * re-rename variant
2019-09-12Update legion gasnet config (#12523)ktsai72-12/+32
2019-09-12py-gpaw: Fixed broken fftw linking in newer versions of py-gpaw (#12795)Simo Tuomisto1-0/+2
2019-09-11fgsl: new version + fix for recent spack commit (#12790)brietzke1-0/+6
2019-09-11jsoncpp: new versions, support cxxstd variant. (#12780)Chris Green1-0/+20
2019-09-10create package popt (#12783)Owen Solberg1-0/+15
2019-09-10fix bug in p4est (don't use MPI spec if not compiling with MPI) (#12784)Jonas Lippuner1-5/+5
2019-09-10openmx: new package (#12768)Hironori-Yamaji1-0/+80
* openmx: new package * openmx: use copy method
2019-09-10cuda: New version 10.1.243 (#12777)Janne Blomqvist1-4/+14
* cuda: New version 10.1.243 Adds CUDA 10.1.243. The installer command-line arguments have slightly changed, hence in the install method the version needs to be inspected in order to give the correct arguments for the new installer. * cuda: Combine common command-line arguments The CUDA 10.1+ installer has slightly different command-line arguments than previous versions. Keep the common parts together and only split where they are different. * Make flake8 happy
2019-09-10py-atropos: new package (#12745)Owen Solberg1-0/+26
* create new package py-atropos * remove whitespace * make tqdm and pysam dependencies optional, exposed as variants
2019-09-10ccs-qcd: disable parallel builds (#12775)Hironori-Yamaji1-2/+2
2019-09-09update bbmap (#12721)xfzhao1-1/+6
* update bbmap * remove one extra comment line
2019-09-09Fix pkgconfig dependencies (#12714)Michael Kuhn3-3/+3
pkgconfig is the virtual dependency, pkg-config is an implementation.
2019-09-09Update py-bokeh: new version & dependencies" (#12724)brietzke1-9/+12
* update py-bokeh: new version & dependencies * Revert "update py-bokeh: new version & dependencies" This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f. * update py-bokeh: new version & dependencies * trigger travis-ci * adjust python dependency-type to br
2019-09-09New package: py-fsspec (#12725)brietzke1-0/+18
* update py-bokeh: new version & dependencies * Revert "update py-bokeh: new version & dependencies" This reverts commit 5e191a0b20a89f09630b4d223a28b19db715603f. * new package: py-fsspec: add package.py * trigger travis-ci * adjust python dependency-type to br
2019-09-09Paraview version (#12766)Dan Lipsa1-5/+10
* Update paraview * Paraview 5.6.2 provides only .xz (no .gz) * Add list_url and list_depth
2019-09-09binutils: fix undefined symbol libintl_dgettext (#12770)viniciusvgp1-0/+1
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