| Age | Commit message (Collapse) | Author | Files | Lines |
|---|
|
|
|
|
|
* prinseq-lite: Create new package
* prinseq-lite: set variant description and add dependency type
|
|
* Fix build issue with PMIx on aarch64
Work around a bug in PMIx that causes build issues on aarch64. Bug was
fixed in PMIx 2.1.1, so the spack package checks both the architecture
and the PMIx version. Workaround is to just not build the PMIx test and
example code.
* Minor code cleanups
Minor corrections to make 'spack flake8' happy.
* Add support for version 2.1.1
|
|
- Ragel is a parser and finite state machine generator that can be
used as an alternative means for solving parsing problems without
Flex.
|
|
|
|
* omega-h: new package
* omega-h: fix multiple package.py issues
* omega-h: use tarball checksum to avoid warning
* omega-h: wrap lines for flake8
|
|
* new package: racon (bioinformatics)
* add cmake_arg method
|
|
* HiC-Pro: a new package.
* Flake8.
* Update.
* Remove nektar.
|
|
|
|
* r-matr: Create new package.
* shocklibs: Create new package.
* r-biom-utils: Create new package.
* r-mgraster: Create new package
* py-poster: Create new package.
* py-requests-toolbelt: Create new package.
* perl-libwww-perl: Create new package.
* py-mg-rast-tools: Create new package.
* mg-rast-tools: Fix version constraints for dependencies.
* Change dependency type of py-setuptools.
|
|
* py-pymol: new package
* py-pymol: needs python+tk
|
|
Change-Id: I31766d3ceb4fa8852b9bdc82444e36514e760f4b
|
|
|
|
|
|
* DIAMOND: Add version 0.9.20
* DIAMOND: add version 0.9.21
|
|
|
|
|
|
* openPMD-api
Add a new package for openPMD-api.
openPMD is a meta-data standard (markup, schema) for hierarchical,
scientific particle and mesh based data.
openPMD-api is a library wrapping the underlying backends (HDF5,
ADIOS, ...) into a single, object-aware API.
* Repository: https://github.com/openPMD/openPMD-api
* Project: https://github.com/openPMD http://www.openPMD.org
* mpi variant forwarding: fix concretization
|
|
* libxml2: adding subdir to cpath for deps
* libxml2: no join_path
* libxml2: fix cpath for run_env
* libxml2: typo
|
|
* freetype: adding subdir to cpath for deps
* freetype: no join_path
* freetype: fix cpath for run_env
|
|
+ I am unable to build suite-sparse@5.2.0 with clang@6.0.0. The build fails
with the error:
```
2397 [ 99%] Linking C executable wildtype_demo
2398 make[4]: Leaving directory
`/tmp/kellyt/spack-stage/spack-stage-w0XYhK/SuiteSparse/GraphBLAS/build'
>> 2399 libgraphblas.so.2.0.1: undefined reference to `__fpclassify'
>> 2400 clang-6.0: error: linker command failed with exit code 1 (use -v to
see invocation)
>> 2401 make[4]: *** [wildtype_demo] Error 1
```
+ This error appears because libgraphblas.so requires `-lm`, but that link
dependency is not explicitly listed in GraphBLAS\CMakeLists.txt.
+ A patch file is provided to add this dependency. The patch is only applied
when the compiler is `%clang`.
|
|
* add variants and conflicts for curl
* darwinssl - Apple's SSL/TLS implementation
* libssh - use libssh implementation
* add darwin conflict for libssh{,2}
* add linux conflict for darwinssl
* remove openssl when +darwinssl
* Update package.py
* Update package.py
* Update package.py
* Update package.py
|
|
|
|
|
|
build package files. (#7812)
|
|
* xrandr: needs xrandrproto
* xrandr: fix typo
|
|
* ADIOS 1.13.1
ADIOS 1.13.1 fixes several issues with zero-sized block
reading and writing when compression transports are used.
* SZ 1.4.12.3
Add the lastest SZ release used in ADIOS1.
|
|
* bcl2fastq2: package update
* package/bcl2fastq2: homepage fix
* package/bcl2fastq2: glob fix
* package/bcl2fastq2: code clean up
* package/bcl2fastq2: code clean up #2
|
|
|
|
|
|
|
|
|
|
* bismark: Create new package
* bismark: fix dependency types
|
|
* psmc: new package
* psmc: changed version number
* psmc: overwrite build phase
|
|
* perl-statistics-pca: Create new package
* perl-statistics-pca: fix dependency types
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
* r-s4vectors: package update
* r-s4vectors: dependencies fix
|
|
|
|
* r-iranges: package update
* r-iranges: package update
* r-iranges: dependencies fix
|
|
* r-genomicranges: package update
* r-genomicranges: dependencies fix
|
|
* geopm: Added initial files for package geopm
and py-natsort dependency
* geopm: Updated variants for hwloc and mpi defaults
* geopm: Cleaned up unwanted hyphenation in description.
* geopm: updates according to change request.
* geopm: Updated minor change requests.
Clarification for ruby-ronn dependency included as a TODO.
This requires changes in the current configure and build process
which will be changed in a future version.
* geopm: changed to AutotoolsPackage and fixed hwloc
The changes for hwloc required to add a specific version bc of a
conflicting version of openmpi's hwloc dependency being below
1.99. This works but updates to this package should check if this
restriction is still required. (Thus TODO added)
* geopm: Added link dependencies (thanks for pointing this out).
Also removed empty line below class definition.
* geopm: Fixed depends_on according to package guide.
Removed wrong type 'run' and removed types for numactl, mpi and hwloc
to use default build & link type.
* geopm: Fixed and updated +doc dependencies
new pacakge ruby-ronn (package specified as in ruby-narray package)
Updated second +doc dependency doxygen.
* geopm: Changed args for Autotools specific feature.
Added enable_or_disable and with_or_without instead of if cascade.
Added overhead variant.
Also added missing dependency (default: build&link) for json-c).
|
|
* glvis@3.3: new package
* mesa-glu: now provides 'glu' (GL Utility library)
* openglu: add package, provides glu
* [GLVis] Use MakefilePackage as base. Add 'develop' version.
Small tweaks in the makefile arguments.
* [GLVis] Locate the X11, GL and GLU libraries within their respective
prefixes. Set the C compiler in the makefile arguments.
* [GLVis] Fix a bug: the same variable was used for two different things.
* [libx11] Add the libs property
* [OpenGL] Add the libs property
* [OpenGLU] Add the libs property
* [GLVis] Use the libs properties of libx11, opengl, and openglu
|
|
|
