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* commit updating py-libensemble package for 0.9.3
* removed commented-out lines
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* petsc,py-petsc4py,slepc,py-slepc4py: add version 3.18.0
* workaround for dealii build failure [with petsc version check]
* pism: add compatibility fix to for petsc@3.18
* add in hipsolver dependency
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* hip-set-prefix-rocm5.2.0-onwards
* Update var/spack/repos/builtin/packages/hip/package.py
Update description
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
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* gasnet: Add new release hash
* upcxx: Add new release hash
* gasnet: misc updates
* upcxx: misc updates
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* Add checksum for py-gitpython 3.1.27
* Update package.py
* Update var/spack/repos/builtin/packages/py-gitpython/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* py-execnet: 1.9.0
* bounds
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* libcroco does not respect gtk-doc configure flag, so removing variant
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* new package + deps
* Update var/spack/repos/builtin/packages/py-about-time/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update var/spack/repos/builtin/packages/py-alive-progress/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* removed unnecessary python version dep
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* add new lua releases
* split install phase and move it into a build phase, remove hardcoded standard flag
* revert back to the original hardcoded std flag, guard patch against versions above 5.4
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* Remove ROCm constraints for ginkgo@glu_experimental.
* Fix style.
* Apply @tcojean suggestion.
* Fix hip_repair_options in camp package.
* Remvoe old ROCm logic.
* Remove added whitespace.
* Fix style issue.
* Revert camp changes.
* Revert camp whitespace change.
* Set Ginkgo preferred version to 1.4.0
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* py-pyopenssl: add version 22.1.0
* Update var/spack/repos/builtin/packages/py-pyopenssl/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Add checksum for py-bokeh 2.4.3
* [@spackbot] updating style on behalf of iarspider
Co-authored-by: iarspider <iarspider@users.noreply.github.com>
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* Add checksum for py-keyring 23.9.1
* Update package.py
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* Add checksum for py-setuptools-rust 1.5.1
* Update package.py
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* Add checksum for py-jupyter-server-mathjax 0.2.6
* Update package.py
* Update package.py
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* Add checksum for py-regex 2022.8.17
* Update var/spack/repos/builtin/packages/py-regex/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Add checksum for py-async-lru 1.0.3
* [@spackbot] updating style on behalf of iarspider
* Update var/spack/repos/builtin/packages/py-async-lru/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
* Update package.py
Co-authored-by: iarspider <iarspider@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* add fortran variant, pass cmake options to build with fortran + specified compiler/mpi compiler wrapper (following existing style in the package), activate exodus fortran wrapper library compilation
* change variant description, fix style
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* gpi-space: add new version
* gpi-space: fix flake8 formatting issues
* gpi-space: fix more flake8 issues
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* Add bioc attribute to r-do-db
* add version 1.38.1 to bioconductor package r-annotationforge
* add version 1.30.4 to bioconductor package r-biocparallel
* add version 2.64.1 to bioconductor package r-biostrings
* add version 4.4.4 to bioconductor package r-clusterprofiler
* add version 2.12.1 to bioconductor package r-complexheatmap
* add version 1.18.1 to bioconductor package r-delayedmatrixstats
* add version 3.22.1 to bioconductor package r-dose
* add version 3.38.4 to bioconductor package r-edger
* add version 1.16.2 to bioconductor package r-enrichplot
* add version 2.20.2 to bioconductor package r-ensembldb
* add version 1.32.4 to bioconductor package r-genomeinfodb
* add version 1.32.1 to bioconductor package r-genomicalignments
* add version 1.48.4 to bioconductor package r-genomicfeatures
* add version 1.44.1 to bioconductor package r-ggbio
* add version 3.4.4 to bioconductor package r-ggtree
* add version 1.24.2 to bioconductor package r-hdf5array
* add version 2.30.1 to bioconductor package r-iranges
* add version 1.36.3 to bioconductor package r-keggrest
* add version 3.52.4 to bioconductor package r-limma
* add version 1.8.1 to bioconductor package r-matrixgenerics
* update r-org-hs-eg-db
* add version 1.38.1 to bioconductor package r-organismdbi
* add version 1.36.1 to bioconductor package r-pathview
* add version 1.56.1 to bioconductor package r-rtracklayer
* add version 1.4.1 to bioconductor package r-scaledmatrix
* add version 1.24.1 to bioconductor package r-scran
* add version 1.6.3 to bioconductor package r-scuttle
* add version 1.18.1 to bioconductor package r-singlecellexperiment
* add version 1.20.2 to bioconductor package r-treeio
* Revert "Add bioc attribute to r-do-db"
This reverts commit 36be5c6072c98ec70bb16f9d613a6fe24407fee1.
* Fix quotes on versions
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* Added deps for slate+rocm smoke test
* Style change
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For older versions of intel-oneapi-compilers, running the compiler in
preprocessor / compilation mode would trigger warnings that
`-Wl,-rpath,...` flags were unused.
This in turn caused certain configure scripts to fail as they did not
expect output from the compiler (it's treated as an error). Notably
cmake's bootstrap phase failed to detect c++ features of the compiler.
As a workaround, add this flag to silence the warning, since I don't
think we can scope the flags to compile+link mode.
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* bump version for libvterm, required by neovim
* bump version for neovim and add related dep constraints
see release note:
https://github.com/neovim/neovim/commit/d367ed9b23d481998d297d812f54b950e5511c24
in particular:
'deps: Bump required libvterm to v0.3'
https://github.com/neovim/neovim/pull/20222
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* netcdf packages: filter compiler wrappers in the *-config files
* netcdf-c: provide dependent packages with unfiltered nc-config
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Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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2.4 seems to have issues with sphinx-rtd and sphinx 5.1:
```
AttributeError: 'Text' object has no attribute 'rawsource'
```
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