Age | Commit message (Collapse) | Author | Files | Lines |
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* Add pic variant to bacio
* Fix black style error
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* [EZTrace] Version uptate to 2.0
* Update var/spack/repos/builtin/packages/eztrace/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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This is in case ninja's setup_dependent_package is called before its
module is initialized by build_environment
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Per #32214, the existing patch `92b2c...` for `gcc@11:` only applies
cleanly for `libzmq@4.3.3:4.3.4`. This PR adds a conflict for earlier
versions, as they cannot be patched due to different context.
For `gcc@11`, this leaves the most recent two versions available (a
satisfactory compromise).
For `gcc@12`, however, there is another existing conflict that makes
these most recent two versions unavailable. This PR adds an upstream
patch for the single most recent version that allows compilation with
`gcc@12` for that most recent version.
Starting point:
- `gcc@11` concretizes on all versions, attempts to apply patch on
`@4.2.3:4.3.4`, and only succeeds to apply patch on `@4.3.3:4.3.4`,
- `gcc@12` concretizes on `@:4.3.1` (and `@master`), attempts to apply
patch on `@4.2.3:4.3.1`, fails to apply patch on all.
Ending point:
- `gcc@11` concretizes on `@4.3.3:4.3.4` (and `@master`), attempts and
succeeds to apply patch on `@4.3.3:4.3.4`,
- `gcc@12` concretizes on `@4.3.4` (and `@master`), attempts and
succeeds to apply patch on `@4.3.4`.
Verified with environment build:
```yaml
spack:
specs:
- libzmq@4.3.4%gcc@12.1.0
- libzmq@4.3.4%gcc@11.3.0
- libzmq@4.3.3%gcc@11.3.0
view: false
```
which returns the following:
```console
16:14:47 wdconinc@menelaos ~/git/spack (libzmq-patch-gcc12 *+$%=) $
spack install --fresh
==> Installing environment libzmq
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/libmd-1.0.4-egpgd6eoaqtsl5fja2iwsl6gyc4o32p5
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/libsodium-1.0.18-af3rsfnvck6anxf7eeog3f2bph44tjia
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/pkgconf-1.8.0-z5of2hj2c6ygd3kxr4cwv7u7t42sxair
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libmd-1.0.4-tec234gco2sd7n52dkwbrad43sdhaw4o
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libsodium-1.0.18-uljf675u3yrn5c7fdjdpa5c7qnnkynke
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/pkgconf-1.8.0-l4hzc2g4pnn7dwyttphmxivt3xghvpoq
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/libbsd-0.11.5-fi3ri64moy45ksr4sf5pcwd6k23dsa4o
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libbsd-0.11.5-2matmm7im7oygrr77k7wznttv4rbupfz
==> Installing libzmq-4.3.4-t7ad54q3atrnte4rzq7g7cfjcw5227pr
==> No binary for libzmq-4.3.4-t7ad54q3atrnte4rzq7g7cfjcw5227pr found:
installing from source
==> Fetching
https://mirror.spack.io/_source-cache/archive/c5/c593001a89f5a85dd2ddf564805deb860e02471171b3f204944857336295c3e5.tar.gz
==> Fetching
https://mirror.spack.io/_source-cache/archive/31/310b8aa57a8ea77b7ac74debb3bf928cbafdef5e7ca35beaac5d9c61c7edd239
==> Fetching
https://github.com/zeromq/libzmq/pull/4334.patch?full_index=1
==> Applied patch
https://github.com/zeromq/libzmq/commit/92b2c38a2c51a1942a380c7ee08147f7b1ca6845.patch?full_index=1
==> Applied patch
https://github.com/zeromq/libzmq/pull/4334.patch?full_index=1
==> libzmq: Executing phase: 'autoreconf'
==> libzmq: Executing phase: 'configure'
==> libzmq: Executing phase: 'build'
==> libzmq: Executing phase: 'install'
==> libzmq: Successfully installed
libzmq-4.3.4-t7ad54q3atrnte4rzq7g7cfjcw5227pr
Fetch: 0.61s. Build: 1m 31.57s. Total: 1m 32.18s.
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-12.1.0/libzmq-4.3.4-t7ad54q3atrnte4rzq7g7cfjcw5227pr
==> Installing libzmq-4.3.3-pxrd6piprucu65bkro2ixms6d3x2eudz
==> No binary for libzmq-4.3.3-pxrd6piprucu65bkro2ixms6d3x2eudz found:
installing from source
==> Fetching
https://mirror.spack.io/_source-cache/archive/9d/9d9285db37ae942ed0780c016da87060497877af45094ff9e1a1ca736e3875a2.tar.gz
==> Using cached archive:
/home/wdconinc/.spack/cache/_source-cache/archive/31/310b8aa57a8ea77b7ac74debb3bf928cbafdef5e7ca35beaac5d9c61c7edd239
==> Applied patch
https://github.com/zeromq/libzmq/commit/92b2c38a2c51a1942a380c7ee08147f7b1ca6845.patch?full_index=1
==> libzmq: Executing phase: 'autoreconf'
==> libzmq: Executing phase: 'configure'
==> libzmq: Executing phase: 'build'
==> libzmq: Executing phase: 'install'
==> libzmq: Successfully installed
libzmq-4.3.3-pxrd6piprucu65bkro2ixms6d3x2eudz
Fetch: 0.93s. Build: 11.55s. Total: 12.48s.
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libzmq-4.3.3-pxrd6piprucu65bkro2ixms6d3x2eudz
==> Installing libzmq-4.3.4-hiil6dzy2reb4nk555zztwh44rpbyv4h
==> No binary for libzmq-4.3.4-hiil6dzy2reb4nk555zztwh44rpbyv4h found:
installing from source
==> Using cached archive:
/home/wdconinc/.spack/cache/_source-cache/archive/c5/c593001a89f5a85dd2ddf564805deb860e02471171b3f204944857336295c3e5.tar.gz
==> Using cached archive:
/home/wdconinc/.spack/cache/_source-cache/archive/31/310b8aa57a8ea77b7ac74debb3bf928cbafdef5e7ca35beaac5d9c61c7edd239
==> Applied patch
https://github.com/zeromq/libzmq/commit/92b2c38a2c51a1942a380c7ee08147f7b1ca6845.patch?full_index=1
==> libzmq: Executing phase: 'autoreconf'
==> libzmq: Executing phase: 'configure'
==> libzmq: Executing phase: 'build'
==> libzmq: Executing phase: 'install'
==> libzmq: Successfully installed
libzmq-4.3.4-hiil6dzy2reb4nk555zztwh44rpbyv4h
Fetch: 0.01s. Build: 10.77s. Total: 10.78s.
[+]
/opt/software/linux-ubuntu22.04-skylake/gcc-11.3.0/libzmq-4.3.4-hiil6dzy2reb4nk555zztwh44rpbyv4h
```
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* phylip: adding workarounds for gcc10+
* phylip: switch to spec.satisfies
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Co-authored-by: Prasanthi <pdonthir@amd.com>
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* new package: r-glmgampoi
* Remove duplicate depends_on directive
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- r-bluster
- r-metapod
- r-scran
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* [ycsb] fixes build process and installation of YCSB
* [ycsb] fixing style
* [ycsb] removed extra newline
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* ddt: Initial commit
* ddt: Minor change to license date to appease the CI gods
* Get rid of unattractive extra line
* Switch to sha256 instead of md5
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* Initial Draft of E3SM-Kernels Spackage
Initial draft of E3SM-Kernels. Currently no support for nested_loops due
to build system limitations
* Style Check and Fixed gfortran Check
Fixed style issues and changed gnu toolchain check to a gfortran check
due to hybrid compilers (e.g. clang+gfortran)
* Fixed Style Issues
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LAMMPS' setup.py uses setuptools as of lammps/lammps@2ed8e5cf022
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* tixi: new variants (fortran,shared)
Since some tixi 3 versions, additional CMake flags are needed to build
tixi with shared libraries, respectively with Fortran support.
* tixi: fix style
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* Changes for ROCm-5.2.0 changes and new recipe rocwmma
* modify the maintainers for hipify-clang
* address review comments
* update the rocwmma new recipe as per latest syntax
* fix style errors
* modify the patch file to provide the details about the patch
* fix style errors
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* Match main version.
`develop` no loger exists.
* Change develop to main.
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* cplex: add package.py
* Update var/spack/repos/builtin/packages/cplex/package.py
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* whizard: Fix passing of build options, update versions
The dependency of whizard on libtirpc is now correctly passed down as
an autotools option.
Update known versions of package with 3.0.2 and 3.0.3.
* Express path to headers via spec object methods
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Co-authored-by: Yuichi Otsuka <otsukay@riken.jp>
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
Co-authored-by: otsukay <otsukay@users.noreply.github.com>
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* New package: py-griffe and new build backend: py-pdm-pep517
* add pdm to build backend docs
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Some programs such as `minccalc` depend on libfl.so at runtime.
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* [WRF] Update to version 4.4.
* [WRF] Patches for v4.4.
* Fixing style.
* [@spackbot] updating style on behalf of t-brown
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* Add new package for MUST runtime correctness analysis tool
* Fix encryption to SHA256 to fix with spack convention.
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* cpu-features: fix fetch failure
`master` branch was renamed to `main`
* Update var/spack/repos/builtin/packages/cpu-features/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* Fix intel-oneapi-compilers-classic bin path
* Update package.py
* intel-oneapi-compilers-classic fix path
Co-authored-by: OfirGan <offirgan@gmail.com>
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This variable is used by some programs both internal and external to the
toolkit itself to discover shared objects, data, etc.
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compiler (#32142)
* py-numpy: Change Fortran detect order for Fujitsu Compiler.
* create setup.cfg instead of command line.
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* [py-loguru] New package
* [py-loguru] Removed commented out line
* [py-loguru] Added types removed extra dependencies
* [py-loguru] missing windows dependency. listing windows as a conflict for now
* [py-loguru] depends on py-colorama when platform=windows
* [py-loguru] flake8
* [py-loguru] Import update
* [py-loguru]
- python is a runtime dependency
- setuptools is a build dependency
* [@spackbot] updating style on behalf of qwertos
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
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* [py-python-javabridge] New package
* [py-python-javabridge] Added dependencies
* [py-python-javabridge] Added types
* [py-python-javabridge] py-setuptools and java are dependencies
* [py-python-javabridge] Import update
* [@spackbot] updating style on behalf of qwertos
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
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* libfabric: add new versions
1.15.0, 1.15.1, main (previously named master)
* Add OPX fabric option, with conflict for versions before v1.15.0
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
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* geant4: use define function
* geant4: Change new feature from conflicts to when
* geant4: add support/conflicts for nvhpc
* fixup! geant4: add support/conflicts for nvhpc
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