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2023-09-18chexmix: new package (#38441)George Young2-0/+52
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-18coin3d: apply upstream patches to fix build on Centos 8 (#39839)Martin Aumüller1-0/+18
fixes undefined references to dlerror, dlopen, dlsym, dlclose and XDefaultScreenOfDisplay, XScreenNumberOfScreen, XCreatePixmap, XFree, XFreePixmap, XCloseDisplay, XOpenDisplay
2023-09-18Julia: Fix sha256 for some LLVM patches (#40041)Rémi Lacroix1-3/+3
2023-09-15grass: Update spec for gdal dependency (#38396)Joscha Legewie1-1/+2
2023-09-15linux-headers: drop rsync dep, add new version (#39867)Harmen Stoppels1-1/+12
2023-09-15update sha256 after new tarball uploads (#40030)David Gardner1-1/+1
2023-09-15Group primitive url/path handling functions together (#40028)Massimiliano Culpo1-4/+2
2023-09-15Sandia OpenSHMEM: Update to include version 1.5.2 (#40025)Jack Morrison1-0/+1
2023-09-14Add shared and pic variants to libxml2 (#38094)Alex Richert1-0/+16
2023-09-14Add Scine QCMaquis recipe to builtin packages (#39709)Adam Grofe1-0/+62
* Add Scine QCMaquis recipe to builtin packages * Format scine-qcmaquis recipe using black * Remove import os from scine-qcmaquis recipe * Reduce length of symmetries line in scine-qcmaquis * Add myself as a maintainer of the scine-qcmaquis recipe * Update Scine-QCMaquis recipe following the review PR URL: https://github.com/spack/spack/pull/39709 Changes: - Updated Symmetries variant to us multi feature - Added dependency to boost+chrono since it was undocumented - Use define_from_variant to setup CMake args - Make version 3.1.2 be preferred since 3.1.3 build is broken * Change build_tests boolean condition --------- Co-authored-by: Adam Grofe <adamgrofe@microsoft.com>
2023-09-14meme: add 5.5.4, correct dependencies (#40014)George Young1-21/+24
* meme: add 5.5.4, correct dependencies * variant renaming --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-14gffread: new package @0.12.7 (#40015)George Young1-0/+23
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-14Set # of ninja procs to 'make_jobs' for scipy (#293) (#38831)Alex Richert1-0/+1
2023-09-14Add pic option & maintainer to lz4 (#38095)Alex Richert1-0/+8
Co-authored-by: Greg Becker <becker33@llnl.gov>
2023-09-13Support static case for find_libraries() in xz (#38100)Alex Richert1-1/+8
* Update xz * add maintainer to xz * [@spackbot] updating style on behalf of AlexanderRichert-NOAA
2023-09-13Add pic variant for libpng (#37964)Alex Richert1-0/+2
2023-09-13Allow git to compile against static curl (#37960)Alex Richert1-1/+8
2023-09-13add trompeloeil package (#39944)Billae1-0/+20
* add trompeloeil package * remove maintainer as he wish not to be * fix style
2023-09-13Add static-only option for udunits (#38099)Alex Richert1-0/+7
* Add static-only option for udunits * add maintainer to udunits
2023-09-13Add libs property/find_libraries to libiconv (#37962)Alex Richert1-0/+5
2023-09-13Add pic and shared variants to GSL (#37961)Alex Richert1-0/+5
* Add pic and shared variants for gsl * fix gsl variant logic * make +pic default for gsl
2023-09-13ip recipe updates (#39997)Alex Richert1-9/+29
2023-09-13Add develop version to g2tmpl (#39994)Alex Richert1-1/+3
* Add develop version to g2tmpl * Update package.py
2023-09-13Add develop version for gfsio (#39995)Alex Richert1-1/+3
* Add develop version for gfsio * Update package.py
2023-09-13Add develop version to landsfcutil (#39998)Alex Richert1-0/+2
2023-09-13Add two versions to ncio recipe (#39999)Alex Richert1-0/+3
2023-09-13Add develop version for nemsio (#40000)Alex Richert1-1/+3
2023-09-13Add develop version to nemsiogfs (#40001)Alex Richert1-0/+2
2023-09-13Add develop version to sfcio (#40002)Alex Richert1-1/+3
* Add develop version to sfcio * Update package.py
2023-09-13Add develop version to sigio (#40003)Alex Richert1-1/+3
2023-09-13Add develop version to wrfio (#40004)Alex Richert1-1/+3
2023-09-13Add check() to sp recipe (#40005)Alex Richert1-4/+10
2023-09-13Update upp recipe (#40006)Alex Richert1-15/+8
2023-09-13interproscan: adding new version and variant to include databases. (#40009)snehring1-1/+50
2023-09-13add charliecloud 0.34, deprecate previous (#40008)Jordan Ogas1-4/+21
2023-09-13scorep: Change in configuration option for nvhpc compiler (#39919)Laura Bellentani1-1/+10
* scorep version 8.1 added * configure finds cudart and cupti in the nvhpcsdk suite * style fixed * changes to find libcuda.so in cuda directory --------- Co-authored-by: Laura Bellentani <lbellen1@login01.leonardo.local>
2023-09-13hiop: Add version 1.0.0 (#39972)Cameron Rutherford1-0/+1
2023-09-13glibc: add older versions (#39978)Harmen Stoppels7-0/+299
2023-09-13GDAL: add v3.7.2 (#39979)Adam J. Stewart1-0/+1
2023-09-13CP2K package: various AOCC compatibility fixes (#39773)AMD Toolchain Support3-2/+75
* cp2k: patch several old versions to help newer compilers * cp2k: use -O2 optimization for AOCC compiler * cp2k: do not support old AOCC compilers * cp2k: simplify when clause due to conflicting out old compilers * cp2k: give a more meaningful message for confilcts Co-authored-by: Ning Li <ning.li@amd.com> Co-authored-by: Phil Tooley <phil.tooley@amd.com>
2023-09-13Add cmake package for v2.1.0 and master (git) versions of libfirefly (#39778)Gurkirat Singh1-0/+29
* libfirefly: Add cmake package for v2.1.0 and master (git) versions * Separate git URL from version declaration Co-authored-by: Alec Scott <alec@bcs.sh>
2023-09-13unifyfs: support openssl 3 (#39945)Harmen Stoppels1-13/+16
* unifyfs: drop upperbound on deprecated openssl The package uses deprecated MD5 functions from OpenSSL, which causes warnings, but (a) Spack by default disables -Werror, and (b) those functions will continue to exist in OpenSSL 3. * unifyfs: enable parallel build, only make check sequential * unifyfs: order class methods by install phases
2023-09-13py-maestrowf: new version, fix artificial py-cryptography dep, support ↵Harmen Stoppels2-21/+34
openssl 3 (#39946) * py-maestrowf: add new version 1.1.9, deprecate development releases * py-maestrowf: drop py-cryptography in 1.1.9 * py-maestrowf: drop py-cryptography dependency entirely, since it is not a direct dependency * py-merlin: new version, ensure openssl 3 compat * py-merlin: drop py-coloredlogs@10: lowerbound * py-maestrowf: add py-rich, reorder deps * py-celery: explain why upperbound is in spack but not in requirements.txt
2023-09-12Update g2c recipe: add develop version and misc. variants (#39965)Alex Richert1-5/+53
* Update g2c recipe: add develop version and misc. variants * add testing to g2c * Update package.py
2023-09-12py-lightly: add v1.4.18 (#39960)Adam J. Stewart1-0/+1
2023-09-12r-piggyback: Add `R` package `piggyback` (#39932)Johann Gaebler1-0/+53
2023-09-12r-pl94171: Add R package PL94171 (#39926)Johann Gaebler1-0/+37
2023-09-12binutils: add v2.41 (#39483)Massimiliano Culpo1-0/+1
2023-09-12bam-readcount: add 1.0.1, correct build flags (#39950)George Young1-0/+4
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-09-12CI/Add superlu-dist to broken stand-alone tests due to hang (#38908)Tamara Dahlgren1-0/+15
* Add superlu-dist to broken stand-alone CI tests * Revert "disable superlu test (#38894)" This reverts commit e16397b5d865d402c749482d05bb2bdc09b96661.
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