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2022-03-30kallisto: add v0.48.0 (#29689)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-03-30freebayes: add v1.3.6 (#29692)dlkuehn1-0/+1
Co-authored-by: David Kuehn <las_dkuehn@iastate.edu>
2022-03-30gcc: add missing dependencies (#29671)Tom Scogland1-0/+9
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-30simmetrix-simmodsuite: add opencascade variant and version 16.0-220312 (#29759)Cameron Smith1-0/+39
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-03-30ftxui: add new package (#29724)Matthieu Dorier1-0/+16
2022-03-30py-m2r: constrain py-mistune to version 0.8.1 (#29608)Glenn Johnson1-1/+1
* py-m2r: constrain py-mistune to version 0.8.1 * Remove lower half of py-mistune version constraint
2022-03-30cgns: add maintainer (#29775)Greg Sjaardema1-0/+1
2022-03-30neko: add new package (#28791)Niclas Jansson1-0/+42
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-03-30proj: add v8.2.1, v8.2.0 and v8.1.1 (#29774)Thomas Dickerson1-0/+3
Version 9.0.0 drops Autotools support in favor of CMake and will presumably require larger changes to package.py
2022-03-30Flecsi: updated version semantic (#29780)Robert Pavel1-8/+13
Updated flecsi spackage to better support changes in control variables in post 2.1.0 releases while also making legacy versions clearer as to what is a tagged release and what is a rolling-ish development branch
2022-03-30Add patch to fix compilation of boost with compilers not in path (#29718)Mikael Simberg2-0/+16
Co-authored-by: Mikael Simberg <mikael.simberg@iki.if>
2022-03-29r-quantreg: add v5.88 (#29621)Glenn Johnson1-0/+1
2022-03-29py-reportlab: add missing dependency on freetype (#29611)Glenn Johnson1-0/+5
* py-reportlab: add missing dependency on freetype * Add missing dependencies * Update var/spack/repos/builtin/packages/py-reportlab/package.py Use pil virtual. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-29Trilinos: add linker flags to improve behavior (#29492)Seth R. Johnson1-3/+12
2022-03-29Support DASK backend in XARRAY. (#29726)Nichols A. Romero1-0/+2
* Support DASK backend in XARRAY. * Create XARRAY parallel variant with correct py-dask dependency.
2022-03-29Update cgns for new release (#29709)MicK71-1/+2
Add CGNS 4.3.0 version
2022-03-29ExaGO: add v1.4.0 and v1.4.1 (#29712)Asher Mancinelli2-29/+85
* ExaGO: Handling of cuda architectures and amdgpu targets changed to effectively handle multiple targets. See #28441. * Add ROCm support to ExaGO and update ROCm support in HiOp * ExaGO+rocm requires HiOp+rocm * Newer versions of CMake may set HIP_CLANG_INCLUDE_PATH incorrectly: add comments to the ExaGO/HiOp packages explaining how to address this problem if it occurs.
2022-03-29cgns: add v4.3.0 (#29773)Greg Sjaardema1-0/+1
2022-03-29mochi-margo: add v0.9.8 (#29771)Matthieu Dorier1-0/+1
2022-03-29SUNDIALS: refactor CMake recipe (#29585)Seth R. Johnson1-181/+95
- Use define/define_from_variant - Remove unused "fortran_flags" - Fix CUDA architectures when using multiple (needs semicolon not comma separators) - Add `when=` variant restrictions to simplify logic
2022-03-28cuda: add 11.6.2 (#29756)Carlos Bederián1-0/+4
2022-03-28Convert git-over-ssh package URLs to canonical format (#29754)Thomas Dickerson3-3/+3
Use canonical SSH urls for git-over-ssh package urls. See also: discussion on #29706, #29749, and https://forum.gitlab.com/t/provided-ssh-url-is-in-the-wrong-format/14320
2022-03-28spiner: fix +cuda (#29758)Richard Berger1-2/+2
2022-03-28New package: spiner (#29719)Richard Berger1-0/+77
* New package: spiner * Update dependencies for spiner package * Update var/spack/repos/builtin/packages/spiner/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Update var/spack/repos/builtin/packages/spiner/package.py Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> * Remove versions that can't be installed and use ports-of-call@1.1.0 Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-03-28survey package: add versions 1.0.2/1.0.3; add tls model variant (#29375)Jim Galarowicz1-3/+16
2022-03-28ports-of-call: new version 1.1.0 (#29723)Richard Berger1-2/+2
Version 1.0.0 was uninstallable.
2022-03-28batchedblas: new package (#29028)FJ-NaokiMatsumura2-0/+52
2022-03-28gpi-space: add v22.03 (#29736)Max Zeyen1-0/+1
2022-03-28Adding NVIDIA HPC SDK 22.3 (#29737)Filippo Spiga1-0/+4
Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
2022-03-28julia: add patch reverting llvm rpath changes (#29731)Harmen Stoppels2-0/+35
2022-03-28julia 1.6/1.7: constrain libgit2, libssh2 (#29728)Harmen Stoppels1-4/+8
2022-03-27py-torch: fix to build with fujitsu-ssl2 (#29283)FJ-NaokiMatsumura8-0/+544
* py-torch: fix build with fujitsu-ssl2 * fix to use fujitsu-ssl2 in py-torch v1.5.0 to v1.11.0 * fix to use fujitsu-ssl2 in py-torch v1.2.0 to v1.11.0 * Delete fj-ssl2.patch * renamed the patches * Rename fj-ssl2.1.5.patch to fj-ssl2_1.5.patch * Delete fj-ssl2_1.5.patch
2022-03-27mochi-thallium: new package (#29722)Matthieu Dorier1-0/+60
2022-03-27h5z-zfp: fix build when ^hdf5+mpi (#29733)David M. Rogers1-3/+9
2022-03-27openmpi: switch to using main (#29725)Howard Pritchard1-8/+8
The Open MPI project has elected to name our development branch - main. Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2022-03-26py-torchvision: adjust jpeg dependency (#29614)Glenn Johnson1-1/+1
2022-03-26llvm: add @14.0.0 (#29732)eugeneswalker1-0/+2
* llvm: add @14.0.0 * llvm@14 provides virtual
2022-03-25r-rsqlite: add v2.2.10 (#29624)Glenn Johnson1-0/+2
2022-03-25[julia] gfortran patch required for 1.7.2 (#29720)Jen Herting1-1/+1
2022-03-25Update rocm recipes for rocm-5.0.0 release (#29269)Sreenivasa Murthy Kolam48-109/+529
* update rocm recipes for ROCm-5.0.0 release * revert address sanitizer changes * fix style errors * update to the rocm recipes for 5.0.2 release * fix review comments inside the rocfft recipe * update the rocfft recipe for sqlite dependency
2022-03-25New package: ports-of-call (#29696)Richard Berger1-0/+35
2022-03-24Sherpa: add several new variants used by CMS (#29338)iarspider2-22/+85
2022-03-24vecgeom: fix install error when ~cuda (#29716)Valentin Volkl1-9/+11
2022-03-24PDC: add version 0.2 and branches (#29572)Jean Luca Bez1-1/+7
* Update package.py * Update package.py * Fixes on versions * Fix style * Remove code * Include latest version and removed code * Remove unecessary cmake dependency * Apply suggestions
2022-03-24Fix py-onnx-runtime recipe (#29646)iarspider2-11/+24
* Fix py-onnx-runtime recipe * Add missing dependencies * Update var/spack/repos/builtin/packages/py-cerberus/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Better fix for py-onnx-runtime Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-03-24omega-h: add v10.1.0 from fork (#29528)Cameron Smith1-0/+1
* omegah: v10.1.0 this version is from the SCOREC fork of Omega_h * prefix version with scorec Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov> Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-03-24add_files_to_view: flip incorrect default (#29700)Harmen Stoppels1-1/+1
2022-03-24environment views: single pass view generation (#29443)Harmen Stoppels4-1/+65
Reduces the number of stat calls to a bare minimum: - Single pass over src prefixes - Handle projection clashes in memory Symlinked directories in the src prefixes are now conditionally transformed into directories with symlinks in the dst dir. Notably `intel-mkl`, `cuda` and `qt` has top-level symlinked directories that previously resulted in empty directories in the view. We now avoid cycles and possible exponential blowup by only expanding symlinks that: - point to dirs deeper in the folder structure; - are a fixed depth of 2.
2022-03-23Update py-numpy dependency on Python to avoid build failures (#29682)Ralf Gommers1-6/+6
2022-03-23py-cffi: add compiler flags to fix build with clang (#29679)Valentin Volkl1-0/+10
* py-cffi: add compiler flags to fix build with clang For %clang@13.0.1, this avoids the ``` clang-13: warning: optimization flag '-ffat-lto-objects' is not supported [-Wignored-optimization-argument] ``` warning being turned into an error, and fixes this link error: ``` build/temp.linux-x86_64-3.10/c/_cffi_backend.o: file not recognized: file format not recognized ``` * style
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