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* updated python version requirements
* updated sha256
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* py-checkm-genome and py-pysam: bumped version and updated deps
* updated setuptools dep type
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
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* axom@0.7.0: require cmake@3.21:
* Update var/spack/repos/builtin/packages/axom/package.py
Co-authored-by: Chris White <white238@llnl.gov>
Co-authored-by: Chris White <white238@llnl.gov>
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2021.7.0 fixes build on linux-ubuntu20.04-skylake / oneapi@2022.2.0
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* fixed version numbers to python 2 and old biopython
* changed shortbred pacakge to pypi, removed python 2 version
* added package description
* re-added shortbred package with depreciated flag
* fixed style and removed unnecessary python dep (it can't build with python 2 anyway)
* removed whitespace and readded the python2.7.9+ dep
* fixed style
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* Add Boost 1.80.0
* Add conflict for Boost 1.80.0 and dealii
* Add conflict for Boost 1.80 and %oneapi
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* hiop: add v0.7.0
* Update var/spack/repos/builtin/packages/hiop/package.py
Co-authored-by: Cameron Rutherford <cameron.rutherford@me.com>
Co-authored-by: Cameron Rutherford <cameron.rutherford@me.com>
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* kokkos: add version 3.7.00
* kokkos-kernels: add versions 3.6.01 and 3.7.00
* add correct kokkos dependence
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- add conflcit with gcc < 7
- fails with MacOS sed - so add in (gnu) sed as build dependency
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* Update OpenFAST package file.
* Add comment.
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* ophidia-primitives: new package at v1.7
* ophidia-primitives: Add mantainers
* ophidia-primitives: Fix style
Co-authored-by: SoniaScard <SoniaScard@users.noreply.github.com>
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* Update TIOGA package.
* Add comment.
* Remove cuda variant and MPI_ROOT.
* Style.
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* new package
* fixed style
* actually building now
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+ refactor (#33389)
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For ARM64, fallback to gccgo. (go-bootstrap@1.4 can't support ARM64)
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Without this patch one hits this error trying to compiler papi with Intel OneAPI:
icx: error: Note that use of '-g' without any optimization-level option will turn off most compiler optimizations similar to use of '-O0' [-Werror,-Wdebug-disables-optimization]
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
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* Fixed two bugs in the HIP package recipe. The first is that the
HIP_PATH was being set to the actual spec, and not the spec prefix.
The second bug is that HIP is expected to be in /opt/rocm-x.y.z/hip
but it's libraries can exist at both /opt/rocm-x.y.z/hip/lib and
/opt/rocm-x.y.z/lib. This means that the external detection logic may
find it in either and it turns out that some modules only expose one
of those two locations. Logic is added to ensure that the internal
HIP_PATH and associated ROCM_PATH are correctly set in both cases.
* Added support for Aluminum to use the libfabric plugin with either
RCCL or NCCL.
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This makes it possible to compile with, e.g., `cray-fftw`, not just `fftw`.
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* libbigwig: adding new package libbigwig
* methyldackel: adding new package methyldackel
* libbigwig: tighten up curl variant
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* Add libpressio and dependencies; some of these packages are
maintained as forks of the original repositories and in those
cases the docstring mentions this.
* Add optional dependency in adios2 on libpressio
* cub package: set CUB_DIR environment variable for dependent
installations
* Clear R_HOME/R_ENVIRON before Spack installation (avoid sources
outside of Spack from affecting the installation in Spack)
* Rename dlib to dorian3d-dlib and update dependents; add new dlib
implementation. Pending an official policy on how to handle
packages with short names, reviewer unilaterally decided that
the rename was acceptable given that the new Spack dlib package
is referenced more widely (by orders of magnitude) than the
original
Co-authored-by: Samuel Li <shaomeng@users.noreply.github.com>
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* version bump to 1.6.0
* added py-isal, updated URL
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* Classic Intel compilers do not support gcc-toolchain
This fix removes `--gcc-toolchain=` from the ~.fcg` files for the classic Intel
compilers. AFAIK this option is only supported for Clang based compilers.
This lead to an issue when installing cmake. Reproducer:
```
spack install cmake@3.24.2%intel@2021.7.0~doc+ncurses+ownlibs~qt
build_type=Release arch=linux-amzn2-skylake_avx512
```
Tagging maintainer @rscohn2
* Add `-gcc-name` for icc
.. and `-gxx-name` for icpc.
AFAIK this is used for modern C++ support, so we can ignore `ifort`.
Co-authored-by: Stephen Sachs <stesachs@amazon.com>
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* py-horovod: add v0.26
* py-petastorm: add v0.12.0
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62.6.0, py-wrapt 1.14.1, py-pylint 2.15.0 (#32976)
* Add checksum for py-astroid 2.12.7, py-setuptools 62.6.0
* Also add checksum for py-wrapt
* Update package.py
* Update package.py (#57)
* Update package.py
* Update package.py
* Update package.py
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* py-jupyterlab-pygments: avoid cyclic dependency
* Fix style
* Update package.py
* Update package.py
* [@spackbot] updating style on behalf of iarspider
* Update package.py
* Flake-8
* fix
Co-authored-by: iarspider <iarspider@users.noreply.github.com>
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