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2017-10-17Add a new +clanglibcpp option for Boost (#5708)David Hows1-0/+6
* Add a new +clanglibcpp option for Boost Currently, the compile of boost with clang will use the stdlibc++. This patch adds an optional flag to use clangs included libc++ instead. * Linting Fix long lines and white space errors
2017-10-17votca-xtp: added url (#5772)Christoph Junghans1-2/+1
2017-10-17flang: clean up (#5766)Christoph Junghans1-5/+1
2017-10-17liquo: added 1.3 and develop (#5781)Christoph Junghans1-0/+2
2017-10-17singularity 2.4 added (#5782)Douglas Duckworth1-1/+2
2017-10-17Spack tests no longer clutter var/spack/stageTodd Gamblin1-7/+5
- Tests use a session-scoped mock stage directory so as not to interfere with the real install. - Every test is forced to clean up after itself with an additional check. We now automatically assert that no new files have been added to `spack.stage_path` during each test. - This means that tests that fail installs now need to clean up their stages, but in all other cases the check is useful.
2017-10-16Forcing Paraview to avoid using git describe to determine its own version ↵Jon Rood1-1/+8
number (#5783) * Forcing Paraview to avoid using git describe to determine its own version number. * Shortening references to spec in paraview.
2017-10-16Updated the rc tag and version. (#5761)Aaron Fisher1-2/+2
2017-10-16portage: fixes + added v1.1.* (#5706)Christoph Junghans1-1/+7
2017-10-16armadillo: use libs to provide arpack and superlu libraries (#5777)Michael F. Herbst1-8/+4
2017-10-16petsc: a temporary workaround for concretizer bug in all packages which ↵Denis Davydov1-1/+3
depend on SLEPc (#5755)
2017-10-15Update llvm to version 5.0.0 (#5773)Johann Klähn1-0/+15
2017-10-15Add krims and lazyten (#5771)Michael F. Herbst2-0/+204
* Add krims to spack * Add lazyten to spack * Add description for lazyten * Changes suggested by @davydden and @junghans
2017-10-14boost: remove preferred 1.63 (#5770)Denis Davydov1-5/+1
1.64 had issues serialization (make_array and others) when built with +mpi+python. It appears that those issues are fixed in 1.65.1 so we can remove preferred tag from 1.63.
2017-10-14intel-tbb: add 2018.1 (#5769)Denis Davydov1-0/+2
2017-10-14gsl: add 2.4 (#5768)Denis Davydov1-0/+1
2017-10-14oce: add 0.18.2 (#5767)Denis Davydov1-0/+1
2017-10-14boost: call_once_variadic.patch is already part of 1.56.0 (#5341)Christoph Junghans1-1/+1
2017-10-14Revert "Use cflags instead of the args variable (#5756)" (#5765)Christoph Junghans1-5/+3
This reverts commit 6c3184820aa1052016d92f7ff0419b8085d8ad14.
2017-10-13superlu_dist: update to latest version 5.2.1 (#5762)Satish Balay1-1/+4
The interface to +int64 changed from -D_LONGINT to XSDK_INDEX_SIZE=64. This change uses the appropriate interface for for the given version
2017-10-13Update Sundials package (#5696)David Gardner1-99/+375
* initial update of sundials package * fix bugs in initial sundials update * add xsdk cmake setup, fix generic math option, add cuda/raja Makefiles to install fixes * Fix lapack install bug, add new conflicts, clean up formatting * Address pull requeset comments and make fomatting style consistent Remove blas variant as blas is only needed when used by an external linear solver. Set related CMake blas variables as needed depending enabled external linear solvers. Add minimum required CMake version. Additional conflicts and dependencies for external libraries based on mpi, indextype, and precision. Fix SuperLU_MT logic to check which threading type SuperLU_MT was configured with. Add maintaiers. Change Sundials solver options to use an array of values. Consistently use % for formatting. * change triple-single quotes to single quotes * Change indextype option to a single int64 option
2017-10-13r-preprocesscore: added versioned dependency on r (#5671)Yifan Zhu1-0/+1
2017-10-13r-rmpi: added list_url and updated md5 (#5698)Yifan Zhu1-2/+2
2017-10-13r-edger: added versioned dependency on r (#5669)Yifan Zhu1-0/+1
2017-10-13r-s4vectors: added versioned dependency on r (#5672)Yifan Zhu1-0/+2
2017-10-13likwid: update versions (#5757)Denis Davydov1-0/+3
2017-10-13r-xvector: added versioned dependency on r (#5731)Yifan Zhu1-0/+1
2017-10-13flake8: fix warnings (#5759)Satish Balay3-4/+4
2017-10-13Use cflags instead of the args variable (#5756)Ondřej Čertík1-3/+5
That way the user can still append things to CFLAGS.
2017-10-13py-espresso: initial commit (#5724)Christoph Junghans1-0/+52
2017-10-13espressopp -> py-espressopp (#5732)Christoph Junghans1-2/+6
* espressopp -> py-espressopp * Update package.py
2017-10-13Fix m4 to compile with Intel (#5728)Ondřej Čertík1-0/+3
Fixes #5705.
2017-10-13r-biostrings: added versioned dependency on r (#5667)Yifan Zhu1-0/+1
2017-10-13r-zlibbioc: added versioned dependency on r (#5674)Yifan Zhu1-0/+1
2017-10-13trilinos / oce : add missing if before calling macOS_version (#5743)Denis Davydov2-2/+3
* trilinos: add missing if before calling macOS_version * oce: add missing if before calling macOS_version
2017-10-13r-readr: created new package (#5741)Yifan Zhu1-0/+43
2017-10-13r-dorng: created new package (#5740)Yifan Zhu1-0/+46
2017-10-13r-stringr: added list_url and version 1.2.0 (#5738)Yifan Zhu1-0/+2
2017-10-13r-stringi: added list_url and version 1.1.5 and 1.1.3 (#5737)Yifan Zhu1-0/+3
2017-10-13r-summarizedexperiment: created new package (#5734)Yifan Zhu1-0/+47
2017-10-13r-yaqcaffy: added list_url and versioned dependency on r (#5730)Yifan Zhu1-0/+2
2017-10-13slepc: refine version constraints for petsc 3.8 (#5752)Denis Davydov1-4/+8
2017-10-13openblas: remove extra develop version (#5750)Denis Davydov1-2/+0
2017-10-13gettext: fix prefix (#5749)Denis Davydov1-1/+1
2017-10-12Lbann flags (#5747)Brian Van Essen2-3/+2
* Fixed the datatype flag in the LBANN package. Also added develop version to OpenBLAS. * Fixed where the datatype flag should be set.
2017-10-12r-gcrma: added versioned dependency on r (#5670)Yifan Zhu1-0/+1
2017-10-12r-simpleaffy: added versioned dependency on r (#5673)Yifan Zhu1-0/+1
2017-10-12petsc: add in maintainers (#5729)Satish Balay1-0/+2
2017-10-12Add the option for a versioned layout to boost (#5709)David Hows1-0/+6
2017-10-12kaks-calculator: new package (#5725)Audrey Thoma1-0/+59
* kaks-calculator: new package * kaks-calculator: new package * fixing homepage