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Signed-off-by: Terry Cojean <terry.cojean@kit.edu>
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Co-authored-by: Alec Scott <alec@bcs.sh>
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Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
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* depends_on("eckit@1.24.4:", when="@5.11.22:")
* Update var/spack/repos/builtin/packages/fdb/package.py
Co-authored-by: Alec Scott <alec@bcs.sh>
* make latest tagged release the default install
* revert https://github.com/spack/spack/commit/f258f46660ba5fa7d38bbaedfe21cf8cb2d7aa28
---------
Co-authored-by: Alec Scott <alec@bcs.sh>
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The ^mkl pattern was used to refer to three packages
even though none of software using it was depending
on "mkl".
This pattern, which follows Hyrum's law, is now being
removed in favor of a more explicit one.
In this PR gromacs, abinit, lammps, and quantum-espresso
are modified.
Intel packages are also modified to provide "lapack"
and "blas" together.
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* Add adiak v0.4.0
* Fix style checks
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* Add symlinks for hdf5 library names when built in debug mode
* Only apply bug fix for debug libs when build type is Debug
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* [lcov] Add build and runtime deps necessary for lcov@2.0.0:
+ Many additional Perl package dependecies are required for the new version of lcov.
+ Some of the new dependencies were not known to spack until now.
* Style fix
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This triggers warnings from icx compiler - that breaks petsc configure
$ I_MPI_CC=icx /opt/intel/oneapi/mpi/2021.7.0/bin/mpiicc -E a.c > /dev/null
$ __INTEL_POST_CFLAGS=-Wl,-rpath,/opt/intel/oneapi/mkl/2022.2.0/lib/intel64 I_MPI_CC=icx /opt/intel/oneapi/mpi/2021.7.0/bin/mpiicc -E a.c > /dev/null
icx: warning: -Wl,-rpath,/opt/intel/oneapi/mkl/2022.2.0/lib/intel64: 'linker' input unused [-Wunused-command-line-argument]
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Libgit2 requires python as build dependency. I was getting an error because it was falling back to system Python which is compiled with Intel compilers and thus, `libgit2` was failing because it couldn't find `libimf.so` (which doesn't make sense).
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
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* podio: Add myself as maintainer
* podio: Add 0.17.2 tag
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The libevent release tarballs ship with a `configure` script generated by an old `libtool`. The `libtool` generated by `configure` is not compatible with `MACOSX_DEPLOYMENT_VERSION` > 10. Regeneration of the `configure` scripts fixes build on macOS.
Original configure contains:
```
case $host_os in
rhapsody* | darwin1.[012])
_lt_dar_allow_undefined='$wl-undefined ${wl}suppress' ;;
darwin1.*)
_lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;;
darwin*) # darwin 5.x on
# if running on 10.5 or later, the deployment target defaults
# to the OS version, if on x86, and 10.4, the deployment
# target defaults to 10.4. Don't you love it?
case ${MACOSX_DEPLOYMENT_TARGET-10.0},$host in
10.0,*86*-darwin8*|10.0,*-darwin[91]*)
_lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;;
10.[012][,.]*)
_lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;;
10.*)
_lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;;
esac
```
After re-running `autogen.sh`:
```
case $host_os in
rhapsody* | darwin1.[012])
_lt_dar_allow_undefined='$wl-undefined ${wl}suppress' ;;
darwin1.*)
_lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;;
darwin*)
case $MACOSX_DEPLOYMENT_TARGET,$host in
10.[012],*|,*powerpc*-darwin[5-8]*)
_lt_dar_allow_undefined='$wl-flat_namespace $wl-undefined ${wl}suppress' ;;
*)
_lt_dar_allow_undefined='$wl-undefined ${wl}dynamic_lookup' ;;
esac
```
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* lcov: add version2, perl dep at build and runtime
* lcov: add runtime deps
* namespace-autoclean: new perl package
* datetime: dep on autoclean
* formatting
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* abinit: add v9.10.3
Changed configure arguments for specfying how to use Wannier90 for versions
after 9.8.
When the mpi variant is requested, set the F90 environment variable to point
to the MPI Fortran wrapper when building versions after 9.8 instead of FC.
---------
Co-authored-by: Alec Scott <hi@alecbcs.com>
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* julia: constrain patchelf version
patchelf@0.18 breaks (at least) `libjulea-internal.so`, leading to
errors like:
```
$ julia --version
ERROR: Unable to load dependent library $SPACK/opt/spack/linux-centos8-x86_64_v3/gcc-12.3.0/julia-1.9.2-6hf5qx2q27jth2fkm6kgqmfdlhzzw6pl/bin/../lib/julia/libjulia-internal.so.1
Message:$SPACK/opt/spack/linux-centos8-x86_64_v3/gcc-12.3.0/julia-1.9.2-6hf5qx2q27jth2fkm6kgqmfdlhzzw6pl/bin/../lib/julia/libjulia-internal.so.1: ELF load command address/offset not properly aligned
```
* patchelf: prefer v0.17.x since v0.18 breaks libraries
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* mapl: add 2.41 and 2.42
* Conflict MPICH 3
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* exago: fix v1.5.1 tag; only allow python up to 3.10 for for @:1.5 (#40676)
* exago: fix v1.5.1 tag; only allow python up to 3.10 for for @:1.5 due to pybind error with py 3.11
* hiop@:1.0 +cuda: constrain to cuda@:11.9
* fixes syntax of maintainers
---------
Co-authored-by: eugeneswalker <38933153+eugeneswalker@users.noreply.github.com>
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* intel-xed: fix git hash for mbuild, add version 2023.10.11
Fixes #40912
* Fix the git commit hash for mbuild 2022.04.17. This was broken in
commit eef9939c21c6 by mixing up the hashes for xed versus mbuild.
* Add versions 2023.08.21 and 2023.10.11.
* fix style
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