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2022-12-01Add py-python-lsp-server and dependencies (#34149)Alec Scott3-0/+66
* Add py-python-lsp-server and dependencies * Update var/spack/repos/builtin/packages/py-python-lsp-server/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Relax version range constraints on py-python-lsp-jsonrpc and add missing dep * Add runtime dependency flag to setuptools dependencies * Remove unused python@3.6: dependency and move setuptools-scm to build dep only Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-12-01gnuplot: make readline optional (#34179)iarspider1-2/+4
* gnuplot: make readline optional * Update package.py Co-authored-by: iarspider <iarspider@users.noreply.github.com>
2022-12-01conditional variant values: allow boolean (#33939)Greg Becker1-0/+7
2022-11-30py-scipy: hardcode to use blis.pc (#34171)Adam J. Stewart1-10/+5
2022-11-30Add HDF5 version 1.13.3. (#34165)Larry Knox1-3/+1
* Add HDF5 version 1.13.3. * Remove maintainers no longer with The HDFGroup. * Fix indentation.
2022-11-30redis-plus-plus: newer version and added TLS support (#34197)Loïc Pottier1-1/+7
Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
2022-11-30py-segmentation-models-pytorch: add v0.3.1 (#34214)Adam J. Stewart1-1/+1
2022-11-30new w3emc version (#34219)Edward Hartnett1-0/+1
* updated version of w3emc package * fixed sha
2022-11-30Add py-yt 4.x versions (#30418)Sam Grayson4-45/+124
* Add py-yt 4.x versions * Fix spelling * Add yt dependencies * Refine cython dependency * Tweak depends_on for py-yt 4.x * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Fix comments from code review * Fix formatting * Fix stuff * Fix constraints * Update py-yt to 4.1.2 * Updated packages * Fix py-tomli checksum * Remove `expand` from `py-tomli/package.py` * Respond to Adam's comments * Update checksums * Update checksusm * Respond to comments Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-30Add checksum for py-kiwisolver 1.4.4 (#34121)iarspider1-0/+5
2022-11-30Fix recipe for py-onnx-runtime (#34130)iarspider1-3/+8
* Fix recipe * Update package.py * Update recipe following review * Update var/spack/repos/builtin/packages/py-onnx-runtime/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * remove unused imports * Update package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-30PMIx: enable python bindings (#34107)Sajid Ali1-0/+6
2022-11-29py-bidscoin, py-multiecho: add new packages (#34168)Manuela Kuhn2-0/+55
2022-11-29add 15.0.5, 15.0.6 (#34194)Paul R. C. Kent1-0/+2
2022-11-29CI: Update Data and Vis SDK Stack (#34009)kwryankrattiger1-0/+2
* CI: Update Data and Vis SDK Stack * Update image to match target deployments (E4S) * Enable all packages * Test supported variants of ParaView and VisIt * Sensei: Update Python hint for newer cmake * Sensei: add Python3 hint
2022-11-29icc@2021.6.0 does not support gcc@12 headers (#34191)Stephen Sachs1-0/+3
Error message: ``` /shared/spack/opt/spack/linux-amzn2-x86_64_v3/gcc-7.3.1/gcc-12.2.0-4tairupdxg2tg2yhvjdlbs7xbd7wudl3/bin/../include/c++/12.2.0/bits/random.h(104): error: expected a declaration { extension using type = unsigned __int128; }; ^ ``` Co-authored-by: Stephen Sachs <stesachs@amazon.com>
2022-11-29Dav sdk catalyst (#34010)kwryankrattiger2-2/+5
* SDK: Add Catalyst 1 and 2 support to the SDK * LibCatalyst: Remove unused python3 variant from package
2022-11-29evtgen: add v02.02.00 (#34187)Valentin Volkl1-1/+12
* evtgen: add v02.02.00 * format
2022-11-29Fix libxc cflag (#34000)Cristian Le1-1/+3
Using standard c99 should not be specific to intel compilers.
2022-11-29hiredis: updated package definition to use CMake (#33949)Loïc Pottier1-14/+45
2022-11-28Add maintainer to Exawind stack and Trilinos (#34174)psakievich4-4/+4
* Add maintainer to Nalu-Wind and Trilinos * Add to trilinos * Exawind too * amr-wind too
2022-11-28genfit: add v02-00-01 (#34159)Valentin Volkl1-0/+1
2022-11-28fix typo in path for sanity check (#34117)Hans Fangohr1-1/+1
- typo breaks install
2022-11-28Add new version of snakemake (#34041)Sam Grayson5-7/+116
* Add new version of snakemake * Add myself as a maintainer * py-retry -> py-reretry * Added snakemake variants for storage systems * Updated comments * Responded to Adam's comments * Fixed spack style * Add build/run dependency types
2022-11-28New package: py-statmorph (#34158)Benjamin Meyers4-1/+100
* New package py-statmorph w/ dependecies. Add py-astropy@5.1 * [@spackbot] updating style on behalf of meyersbs * [py-statmorph,py-astropy,py-pyerfa] minor fixes
2022-11-28New package: py-stui (#34156)Benjamin Meyers1-0/+22
* New package py-stui * [py-stui] add maintainer * [@spackbot] updating style on behalf of meyersbs * [py-stui] fix deps
2022-11-28Add checksum for py-rsa 4.9 (#34115)iarspider1-2/+5
* Add checksum for py-rsa 4.9 * Update package.py * Update var/spack/repos/builtin/packages/py-rsa/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-28omegah: new scorec version, fix cuda flags (#34169)Cameron Smith1-1/+9
2022-11-28petsc, py-petsc4py: add 3.18.2 (#34161)Satish Balay2-0/+2
2022-11-28py-bidskit: new package and dcm2niix: add 1.0.20220720 (#34162)Manuela Kuhn2-1/+31
* py-bidskit: new package and dcm2niix: add 1.0.20220720 * Remove list_url
2022-11-28Add checksum for py-traitlets 5.3.0 (#34127)iarspider1-0/+1
2022-11-28py-dcm2bids: add new package (#34163)Manuela Kuhn1-0/+23
2022-11-28easi: update package, rework impalajit (#34032)Thomas-Ulrich3-64/+62
2022-11-28acfl: provides blas, lapack, and fftw-api@3 (#34154)Annop Wongwathanarat1-4/+85
2022-11-28texinfo: add v7.0 (#34150)Hector Martinez-Seara1-0/+1
2022-11-28armpl-gcc: add post-installation check by running examples (#34086)Annop Wongwathanarat1-15/+24
2022-11-28Add restic v0.14.0 (#34148)Alec Scott1-0/+2
2022-11-27direnv: add v2.32.2 (#34147)Alec Scott1-1/+2
2022-11-27rust: add 1.65.0 (#34124)Michael Kuhn1-0/+8
2022-11-27SingularityCE: Add conmon+squashfs as dependencies (#33891)Umashankar Sivakumar1-0/+4
2022-11-27pastix: add new version 6.2.2 (#34066)fpruvost1-2/+3
2022-11-27neovim: fix deptypes (#34060)Harmen Stoppels1-17/+17
2022-11-26py-fastpath: new package (#34142)Luke Diorio-Toth1-0/+21
* py-fastpath: new package * Update var/spack/repos/builtin/packages/py-fastpath/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-11-26emacs: add variant treesitter for Emacs 29+ (#34134)Eric Berquist1-0/+6
2022-11-26prmon: Add missing depends_on py-numpy, py-pandas when +plot (#34123)Wouter Deconinck1-0/+2
2022-11-26aragorn: add newer versions and URL (#34140)Luke Diorio-Toth1-3/+20
2022-11-26minced: add v0.4.2 (#34141)Luke Diorio-Toth1-0/+1
2022-11-26Octopus: branch for Octopus development is now "main" (#34128)Hans Fangohr1-1/+1
Historically, development of the Octopus code was done on the "develop" branch on https://gitlab.com/octopus-code/octopus but now development takes place on "main" (since Q3 2022). The suggestion in this PR to solve the issue is to keep the spack label `octopus@develop` as this better indicates this is the development branch on git than `octopus@main`, but of course to use the `main` branch (there is no choice here - the `develop` branch is not touched anymore). Sticking to `octopus@develop` as the version label also keeps backwards compatibility.
2022-11-26nvtop: Add 2.0.3, 2.0.4, 3.0.0 and 3.0.1 (#34145)marcost21-3/+8
* And add the option to compile support for Intel GPU's
2022-11-26amdblis: symlink libblis-mt to libblis (#32819)Carlos Bederián1-0/+10
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