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2019-07-26kealib: fix incorrect md5sum for v1.4.11 (#12126)Sinan1-6/+8
* fix incorrect md5sum for v1.4.11 * fix url and replace md5 with sha256 * add mainter
2019-07-26update to kim-api-2.1.1 and openkim-models-2019-07-25 (#12137)Ryan S. Elliott2-8/+25
* update to kim-api-2.1.1 and openkim-models-2019-07-25 * openkim-models provide needed dependency constraints and settings * add maintainers and fixup flake8 errors
2019-07-26Add flake8 3.7.8 (#12141)Adam J. Stewart1-43/+34
2019-07-26libxc: Make configure recognize Fujitsu compiler (#12147)t-karatsu2-0/+23
2019-07-26py-pyomo: new package at 5.6.6 (#12134)Justin S1-0/+27
* py-pyomo: new package at 5.6.6 * py-pyomo: add missing deps, python constraint
2019-07-26Small fixes for font-util package (#12148)Rémi Lacroix1-4/+1
* font-util: Remove duplicated dependencies. * font-util: Fix path handling for font resources. The "join_path" call made no sense but still managed to work somehow most of the times.
2019-07-26Add GDAL 3.0.1 (#12140)Adam J. Stewart1-3/+5
2019-07-26Add Python 3.7.4 (#12142)Adam J. Stewart1-1/+4
2019-07-25googletest: Fix reversed +pthreads option (#12128)Oliver Breitwieser1-1/+1
If +pthreads is specified, googletest actually gets build without pthreads support and vice versa. If pthreads is not available, googletest should detect it itself which is why "enabling" pthreads in case of ~pthreads does not seem to cause any error. Change-Id: I29de8c4a23dc3901124b27a1ead3354949b7e65b
2019-07-25interproscan: new package at 5.36-75.0 (#12130)Justin S1-0/+33
2019-07-25git-lfs: add version 2.8.0 (#12131)Matthias Diener1-0/+1
2019-07-25Patches for graphviz (#12133)Glenn Johnson1-0/+11
- patch to build with qt5, enabling gvedit to build - two patches to compile graphviz with icc
2019-07-25xsdk: phist has a conflict with gcc version <= gcc-4.9.1 (#11946)Satish Balay1-3/+4
* xsdk: phist has a conflict with gcc version <= gcc-4.9.1 - so add a variant to disable it on older compiler builds This is triggered by #11677 * fix typo
2019-07-25cmake: Add a patch to revert a findmpi regression (#12129)Chuck Atkins2-0/+33
2019-07-25catch: more versions, new and older. (#12123)Chris Green1-0/+9
New versions 2.9.0, 2.9.1, older versions 2.2.2, 2.2.3, 2.4.1, 2.4.2, 2.7.0, 2.7.1, 2.7.2.
2019-07-25lame & libmad: Added two new packages for sox mp3 support. (#11964)simo-tuomisto4-0/+163
* Added a new package for LAME and a variant in sox for it. * Fixed download url for LAME * libmad: Added new package libmad for mp3 decoding. Changed sox variant from lame to mp3. * libmad: Added m4 as a requirement * libmad: Added comment on patch origins * libmad: Added a list_url for alternate download location * libmad: Fixing libmad download url
2019-07-25gdal: added versions 2.4.2 and 3.0.1 (#12125)Sinan1-0/+2
2019-07-25geant4: improvements with respect to building against CLHEP. (#12124)Chris Green2-6/+42
2019-07-24new command: `spack maintainers` queries package maintainersTodd Gamblin2-0/+40
- We don't currently make enough use of the maintainers field on packages, though we could use it to assign reviews. - add a command that allows maintainers to be queried - can ask who is maintaining a package or packages - can ask what packages users are maintaining - can list all maintained or unmaintained packages - add tests for the command
2019-07-24Add py-setuptools as a build dependency for py-absl-py (#12109)Glenn Johnson1-0/+1
I needed to add py-setuptools to get py-absl-py to build.
2019-07-24Add conflicts statement to freetype for icc (#12111)Glenn Johnson1-0/+4
Freetype-2.8 and above use __builtin_shuffle which is not supported by icc.
2019-07-24Perl take in flags (#12112)t-karatsu1-0/+5
* perl: perl package takes in spack cflags. * fix for flake8 test.
2019-07-24nnvm: cmake bug is fixed. (#12113)Toyohisa Kameyama2-0/+21
2019-07-24rapidjson: Don't add -march=native on ARM and gcc 5.x or before. (#12117)Toyohisa Kameyama2-0/+17
2019-07-24QMCPACK Update July 2019 (#12097)Nichols A. Romero1-16/+9
* Add QMCPACK v. 3.8.0 * Remove QE variant conflict for serial QMCPACK installations. * Add support for QE 6.4.1 converter. * FindLibxml2QMC patch function only needed prior to QMCPACK 3.8.0
2019-07-24Do not build c-blosc test if intel in spec (#12110)Glenn Johnson1-0/+4
While the c-blosc library compiles with icc some of the c-blosc tests do not. Disable the tests so that the spack build can continue.
2019-07-24cmake: fix cxx98flag's name (#12114)t-karatsu1-1/+1
2019-07-23rocksdb: Don't add -march=native on ARM and gcc 5.x or before. (#12108)Toyohisa Kameyama1-0/+7
2019-07-23added relion 3.0.7 - removed deprecated versions (#12101)Douglas Duckworth1-7/+2
* relion - added v 3.0.7 and removed deprecated versions that have inferior performance * relion 3.0.7 does require cuda 9 or above
2019-07-23isaac-server: Don't add -march=native on ARM and gcc 5.x or before. (#12042)Toyohisa Kameyama2-0/+19
2019-07-23nanoflann: Don't add -mtune=native on ARM and gcc 5.x (#12093)Toyohisa Kameyama1-0/+4
2019-07-23Quantum Espresso Update 2019 (#12098)Nichols A. Romero1-3/+3
* Add support for QE 6.4.1 * QE 6.3. backports branch no longer relevant. * List QE develop first.
2019-07-23Add EFA fabric to libfabricJimmie Lin1-1/+2
2019-07-23ioapi: add version 3.2 (#12088)Pariksheet Nanda1-0/+44
* ioapi: add version 3.2 * ioapi: unwrap version checksum; it's exempt from line length QA * ioapi: drop overridden build(); it's the same as the default
2019-07-23ncurses: remove TERMINFO from build env (#12086)Greg Becker1-0/+3
2019-07-23font-util: add missing autoconf automake dependencies (#12053)Marco Comparato1-0/+3
2019-07-22Add UCX 1.6.0 (#12089)Daniel Topa1-0/+1
https://github.com/openucx/ucx/releases/tag/v1.6.0 Released 2019-07-17 Verification builds on LANL Darwin x86_64 and Power9: dantopa@cn2037:pr-update-ucx.spack $ date Mon Jul 22 17:04:14 MDT 2019 dantopa@cn2037:pr-update-ucx.spack $ pwd /scratch/users/dantopa/repos/spack/pr-update-ucx.spack dantopa@cn2037:pr-update-ucx.spack $ spack find -ldf ucx ==> 2 installed packages -- linux-centos7-x86_64 / gcc@4.8.5 ----------------------------- w7fp4n6 ucx@1.6.0%gcc tt2hkol ^numactl@2.0.12%gcc srhy7ry ^rdma-core@20%gcc kvgvhpv ^libnl@3.3.0%gcc -- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------ cji3ce7 ucx@1.6.0%gcc pmgndwh ^numactl@2.0.12%gcc qymrwx6 ^rdma-core@20%gcc 2263pm5 ^libnl@3.3.0%gcc Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2019-07-22scons: add version 3.1.0 (#12084)Matthias Diener1-0/+1
2019-07-22cmake: Move cxx11 flags for fujitsu into the flag_handler method (#12056)Chuck Atkins1-5/+10
* cmake: Move cxx11 flags for fujitsu into the flag_handler method * cmake: sanitization and error checking in flag_handler * cmake: Fix fujitsu flag check from 'fc' to 'fj'
2019-07-22gcc: support without command line tools (#11040)Denis Davydov1-1/+7
2019-07-22openjdk (#10446)zschulte1-2/+18
* openjdk * Removing preferred from latest and adding a few lines for readability. * Remove bad whitesapce * removing formatting changes * stable url for openjdk 1.8 * remove extra blank line * actual binary
2019-07-22tealeaf: Don't add -march=native on ARM and gcc 5.x or before. (#12080)Toyohisa Kameyama1-0/+6
2019-07-22jdk: Add JDK 12.0.2_10 (#12081)Hironori-Yamaji1-0/+2
2019-07-21hpctoolkit: add version gpu and variant cuda (#12068)Mark W. Krentel1-6/+30
Add version for 'gpu' and variant for 'cuda'. These are currently available from the 'master-gpu' branch. * hpctoolkit: add version gpu and variant cuda * The gcc >= 4.8.x requirement only applies for dyninst >= 10.x.
2019-07-21libsharp: Don't add -march=native on ARM (#12064)Toyohisa Kameyama3-1/+32
* libsharp: Don't add -march=native on ARM * Add preferred=True to version 1.0.0.
2019-07-20hpcviewer: add version 2019.07 (#12067)Mark W. Krentel2-2/+8
ibm-java: fix the URL to only use a machine type that ibm-java supports so that 'spack info' doesn't report a non-existent URL on platforms that it doesn't support.
2019-07-19Package inheritance: Find patch files defined in parent classes using MRO ↵Greg Becker1-0/+11
(#12051) Fixes #8908, 11844 Use Python MRO to find patch files from parent classes.
2019-07-19font-util package: add autoconf/automake build deps (#12071)Peter Scheibel1-0/+3
Fixes #12026 These are required on some systems
2019-07-19leveldb: add 1.22 (#12044)Michael Kuhn1-9/+56
2019-07-19libxpm: cope with system gettext if configured. (#10881)Chris Green1-2/+6
* If gettext is installed in the system it won't be in the spec tree.
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