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2023-07-09openssl: prefer 3.x (#36729)Harmen Stoppels6-50/+98
* openssl: prefer 3.x This PR is not intended to be merged immediately, but it would be good to see what packages fail to build in CI so that we can get proper version constraints on openssl (before all packages update and support both openssl 1 and 3) * Disable assembly for 3.x %oneapi * cmake: depend on spack curl, to deal with curl - openssl compat * also make zlib external * remove overly strict & unsafe requirement on py-cryptographty patch version number * update openssl compat bounds in py-cryptography * smaller diff * Make libssh2 an autotools/cmake package * fix weird upperbound in libssh2 as there is not openssl v2 * libssh2: pc file lists plain -lssl -lcrypto w/o leading -L flag, confusing libgit2 parsing of pkg-config output * Actually fix the issue in libssh2: its pc file looks broken
2023-07-09Automated deployment to update package flux-core 2023-07-08 (#38790)Vanessasaurus1-0/+1
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-07-09pkgconf: Update to new upstream URL (#38800)Jonathon Anderson1-1/+1
See https://github.com/pkgconf/pkgconf/commit/437c2a3218bfcb1cae7fa38a4ccd0cb29575ff07
2023-07-09gcc: add 10.5.0 (#38784)Michael Kuhn1-1/+2
2023-07-08qt-* (Qt6 pkgs): new versions 6.5.0, 6.5.1 (#36705)Wouter Deconinck5-0/+10
* qt-base: new version 6.5.0 * qt-declarative: new version 6.5.0 * qt-quick3d: new version 6.5.0 * qt-quicktimeline: new version 6.5.0 * qt-shadertools: new version 6.5.0 * qt-*: new version 6.5.1 * qt-base: new version 6.5.1
2023-07-07PyNVTX: added new package (#38763)Dax Lynch1-0/+26
2023-07-07py-pyarrow: disable dataset variant by default (#38775)Manuela Kuhn1-1/+4
* py-pyarrow: enable parquet variant by default * Disable parquet variant by default * Add conflict to enable parquet when dataset is active * Disable dataset variant by default
2023-07-07py-matplotlib: add v3.7.2 (#38745)Adam J. Stewart1-0/+3
* py-matplotlib: add v3.7.2 * Update dep versions
2023-07-07New package: py-nanobind (#38327)Chris Richardson1-0/+34
* initial commit of nanobind package * style fixes * Update package.py Typo * addressed PR comments * add v1.4.0 * Update var/spack/repos/builtin/packages/py-nanobind/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Matthew Archer <ma595@cam.ac.uk> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-07py-astropy: fix import tests and restrict py-pip version (#38731)Manuela Kuhn7-25/+151
* py-astropy: fix import tests and restrict py-pip version * Fix --install-option name in comments * Rename variant and fix variant dependencies * Remove parquet variant from py-pyarrow
2023-07-06add cgns 4.4.0 (#38530)Mickael PHILIT1-0/+1
2023-07-06freesurfer: add 7.4.1, 7.4.0, 7.3.2 (#38544)Carlos Bederián1-0/+3
2023-07-06mlpack: new package (#38277)Wouter Deconinck1-0/+81
* mlpack: new package mlpack is an intuitive, fast, and flexible header-only C++ machine learning library with bindings to other languages. It is meant to be a machine learning analog to LAPACK, and aims to implement a wide array of machine learning methods and functions as a "swiss army knife" for machine learning researchers. * mlpack: upstream merged patch to allow python installation in spack
2023-07-06Curl Package: Fixup bugs preventing build on Win (#38757)John W. Parent1-4/+1
2023-07-06Add new version 5.0.0 of PyAMG (#38674)Ben Cowan2-1/+7
* Added v5.0.0 of PyAMG. This required v7.1.0 of setuptools_scm due to a bug in 7.0.5. * Added comment about version requirement. * Loosened dependency based on build experiments. * Updated tomli deps. * Update var/spack/repos/builtin/packages/py-setuptools-scm/package.py Dependence for 7.0 only. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-pyamg/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Swapped lines. --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-06Disable fortran in openblas for darwin ci, fix variant default value (#38752)Harmen Stoppels1-1/+1
2023-07-06`py-torch`: fix build (#38730)Thomas Bouvier1-0/+14
2023-07-06py-scikit-learn: add v1.3.0 (#38660)Adam J. Stewart1-9/+13
2023-07-06openfoam.org: add a maintainer(#37280) (#37697)kjrstory1-0/+1
Co-authored-by: Dom Heinzeller <dom.heinzeller@icloud.com>
2023-07-06[py-blis] added versions 0.7.9 and 0.9.1 (#38269)Jen Herting1-0/+3
* [py-blis] added version 0.7.9 * [py-blis] added version 0.9.1 * [py-blis] - removed type run for dependency py-cython
2023-07-06namd: add maintainer (#38740)Jim Phillips1-0/+2
2023-07-06py-abipy: add 0.9.3 (#38716)Manuela Kuhn1-16/+39
* py-abipy: add 0.9.3 * Remove py-cython dependency * Remove dep version restrictions for new release
2023-07-06[py-cymem] added version 2.0.7 (#38267)Jen Herting1-1/+3
* [py-cymem] added version 2.0.3 * [py-cymem] added restriction to py-wheel limitation
2023-07-06`py-dm-tree`: add v0.1.8 (#38606)Thomas Bouvier1-2/+5
* `py-dm-tree`: add v0.1.8 * Update dependencies * Fix hash
2023-07-05`py-horovod`: update to v0.28.1 (#38732)Thomas Bouvier1-0/+1
2023-07-05py-pip: add 23.1.2 (#38608)Manuela Kuhn13-5/+35
* py-pip: add 23.1.2 * Restrict py-pip version for py-protobuf * Restrict py-pip version for straightforward packages * Restrict py-pip version for nrm * Fix --install-option name in comments * Simplify py-pip restriction for py-scs * nrm: fix wrong comment
2023-07-05perl: add 5.38.0, 5.36.1; prefer all even minor versions over development ↵Harmen Stoppels3-15/+123
versions (#38690) * perl: add 5.38.0, 5.36.1; prefer all even minor versions over development versions * fix libxcrypt build with new perl * fix libxcrypt with a patch
2023-07-05py-spglib: add 2.0.2 (#38715)Manuela Kuhn1-4/+4
* py-spglib: add 2.0.2 * Update var/spack/repos/builtin/packages/py-spglib/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Remove py-setuptools as run dependency --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-07-05acts: new variant cxxstd (#38682)Wouter Deconinck1-6/+21
* acts: allow ^root cxxstd=20 * acts: new variant cxxstd, pass through to root * acts: always args.append CMAKE_CXX_STANDARD from variant * acts: remove unused import * acts: fix self.define_from_variant
2023-07-05Drop Python 2 super syntax (#38718)Adam J. Stewart55-73/+71
2023-07-05Drop Python 2 object subclassing (#38720)Adam J. Stewart7-7/+7
2023-07-05salmon: patching to build with %gcc@13: (#38553)George Young1-0/+9
Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-07-05plumed: deprecate non-buildable versions, patch Python makefile only when ↵Harmen Stoppels1-9/+47
supported (#38713)
2023-07-05Update cosma and a few related recipes (#35615)Taillefumier Mathieu4-28/+128
* Add maintainers * Updated cosma archive checksum and costa version - updated cosma version (in the cosma build system) - updated costa version - use the default generic url for downloading packages - do not build tiled-mm when the cpu only version is needed Signed-off-by: Dr. Mathieu Taillefumier <mathieu.taillefumier@free.fr> Co-authored-by: Rocco Meli <r.meli@bluemail.ch> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-07-05damask: fix build of alpha release (#38457)Martin Diehl3-0/+16
2023-07-05Add version 1.8.23 that fixes a compilation bug on clang-15. (#38541)Tom Epperly1-0/+5
2023-07-05tk: convert to new stand-alone test process (#38575)Tamara Dahlgren1-5/+8
2023-07-05ip: add v4.1.0, and additional variants (#38526)Alex Richert1-2/+43
2023-07-05tests/qthreads: convert to new stand-alone test process (#38600)Tamara Dahlgren1-43/+35
2023-07-05tests/papyrus: convert to new stand-alone test process (#38627)Tamara Dahlgren1-65/+80
2023-07-05Build NAMD with Tcl by default (#38645)Jim Phillips1-1/+1
NAMD users expect the Tcl scripting interface to be enabled as it is used in many examples and tutorials in addition to being required for features such as multi-copy algorithms.
2023-07-05git-annex: add latest version 10.20230408 (#38728)Rémi Lacroix1-1/+10
2023-07-05xrootd: add _STAT_VER patch (#38547)Juan Miguel Carceller1-0/+7
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-07-05hcoll: ucx version requirements (#38665)Carlos Bederián1-0/+15
2023-07-05py-pyqt4: stricter dependency versions (#38673)Adam J. Stewart1-3/+6
2023-07-05amrex: add v23.07 (#38676)Weiqun Zhang1-0/+1
2023-07-05py-lightly: add v1.4.11 (#38717)Adam J. Stewart1-0/+1
2023-07-05intel-oneapi-mkl: support for cray mpich (#38725)Robert Cohn1-1/+4
2023-07-05py-pymatgen: add 2022.9.8 (#38714)Manuela Kuhn1-12/+18
2023-07-04remove another Python 3.7 requirement & preference, since it was deprecated ↵Harmen Stoppels1-0/+4
(#38710)
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