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2020-08-16New packages: madgraph, syscalc, collier, gosam-contrib (#17601)iarspider6-0/+1238
* Add Collier and SysCalc recipes * Remove extra syscalc version * Build collier with -j1 for @:1.2.4 * Add recipe for gosam-contrib * Update gosam-contrib recipe with 'provides' * Madgraph recipe, first version * Finalize madgraph recipe + flake8 * Make py2 version of madgraph default; fix hash for syscalc; fix patch * Handle virtual packages (#3) * Update package.py * Update packages.yaml * Remove virtual packages - pt. 1 * Remove virtual packages - pt. 2 * Changes from review - pt. 1 * Changes from code review - pt. 2 * Update var/spack/repos/builtin/packages/collier/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/madgraph5amc/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add hash for version 2.7.2 (available in our private mirror) * Fixes for 2.7.3 family * Patches for 2.7.3{.py3,}{.atlas,} * Fix hash of syscalc * Hack to fix concretization (2.7.3 matches 2.7.3.py3) * Add conflict statement (reported to devs) * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update package.py * Delete madgraph5amc-2.7.2.atlas.patch * Delete madgraph5amc-2.7.2.patch * Update package.py * Apply suggestions from code review Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: iarspider <iarpsider@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-16New packages Mvapich2x and Mvapich2-GDR (#17883)Nithin Senthil Kumar2-0/+424
* Adding new packages Mvapich2x and Mvapich2-GDR which can be installed only via binary mirrors * Added docstring descriptions to both packages * Removed variant wrapper for cuda dependencies * Fixed multiple flake8 errors * Updated APIs to pass unit tests * Updated APIs for MVAPICH2-X package and fixed flake8 warnings for MVAPICH2-GDR * Changed url back to single line * Removed extra parantesis around URL string Co-authored-by: nithintsk <nithintsk@github.com>
2020-08-15[root] add dataframe cmake option (#17962)vvolkl1-1/+2
* [root] add dataframe cmake option @chissg @HadrienG2 @drbenmorgan This has been a separate cmake option starting v6-19 I believe: https://github.com/root-project/root/commit/31292b90826fbb1aaf0694c445f5996cdde3f358 It should default to true -- not sure why, but this recipe sets it to off. I could add a variant too, but since it has become an integral part of root and doesn't introduce extra dependencies, I'd propose to just set it to true like I do here. * Update package.py
2020-08-14pugixml: add version 1.10, add option for shared libs (#18072)Chuck Atkins1-1/+13
2020-08-14Python: add spack external find support (#16684)Adam J. Stewart1-0/+76
2020-08-14pkgconfig: add spack external find support (#16690)Adam J. Stewart2-0/+28
2020-08-14Autoconf: add spack external find support (#16692)Adam J. Stewart1-1/+12
2020-08-14M4: add spack external find support (#16693)Adam J. Stewart1-1/+13
2020-08-14bmake: fix compilation error and added v20200710 (#17956)darmac1-0/+4
2020-08-14GDAL: add spack external find support (#18004)Adam J. Stewart1-0/+6
2020-08-14gmake: add spack external find support (#18009)Adam J. Stewart1-1/+9
2020-08-14nextflow: added v20.07.1 (#18058)Levi Baber1-0/+1
2020-08-14Bazel: add spack external find support (#18008)Adam J. Stewart1-0/+10
2020-08-14OpenGL: add spack external find support (#18003)Adam J. Stewart1-2/+9
2020-08-14GMT: add spack external find support (#18007)Adam J. Stewart1-0/+6
2020-08-14Adding external package support for tar. (#18002)Robert Blake1-0/+8
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-14External package recognition for git. (#18010)Robert Blake1-0/+20
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-14external packages: redirect stderr too (#18037)Adam J. Stewart5-7/+6
2020-08-14NETCDF-C: added v4.7.4 (#18051)Greg Sjaardema1-0/+1
2020-08-14SEACAS: added v2020-05-12 and v2020-08-13 (#18053)Greg Sjaardema1-0/+2
2020-08-14ceed: fix @3.0.0 dependency on hypre@2.18.2 (#17983)Jed Brown1-0/+3
Co-authored-by: Veselin Dobrev <dobrev1@llnl.gov>
2020-08-14Matplotlib: added v3.3.1 (#18061)Adam J. Stewart1-4/+9
2020-08-14py-certifi: add v2020.6.20 (#18060)Adam J. Stewart1-1/+2
2020-08-14Bash: add v5.0.18, external package detection (#18062)Adam J. Stewart1-2/+12
2020-08-13fix configure.ac/autotools issue that casues problems on RHEL 7.7 (#17465)Kai Germaschewski1-0/+4
2020-08-13Update the change to add gomp compatibity to llvm-openmp. (#17400)Jim Galarowicz1-1/+11
* Update the change to add gomp compatibity to llvm-openmp. * Update the change to add gomp compatibity to llvm-openmp using append instead of extend. * Fix flake8 issue. Co-authored-by: Jim Galarowicz <jgalarowicz@newmexicoconsortium.org>
2020-08-13Add support for pFUnit version 4 (#17683)Alicia Klinvex1-8/+27
* pFUnit: Added support for version 4 pFUnit v4 uses submodules, so we must fetch from the repo rather than grabbing the tarball (see #11642). * pFUnit: Added conflicts pFUnit 4 causes an internal compiler error with gcc 7.2.0, and several pFUnit versions are incompatible with shared libraries. * pFUnit: Added conflicts for version 4 Verson 4 uses Fortran 2008 features and cannot be built with gcc compilers prior to 8.4. * pFUnit: Fixed conflicts/dependencies as suggested * pFUnit: Version 4 no longer fetches from git Checksummable files are fetched instead. * pFUnit: Simplify major version check Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * pFUnit: Removed unnecessary patch for v4 The patch is still applied to v3. * pFUnit: Modified MPI flag for v4 pFUnit v3 and v4 use different CMake flags to enable/disable MPI support. Also added a conflict for v3 with MPI enabled using gfortran 10, since newer gfortran is more finicky about datatypes. * pFUnit: Rearranged mpi logic * pFUnit: changed m4 to a build dependency Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * pFUnit: Added URL back I did not realize it was needed by "spack versions" and "spack checksum". Thanks @adamjstewart! Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-13AMD ROCm Mathlibs (#17699)Ganesh Kumar7-0/+234
* ROCm Mathlibs * fixed the review comments * fixed flake8 issues
2020-08-13gcc: improve detection functions (#17988)Massimiliano Culpo1-10/+40
* Don't detect Apple's clang as gcc@4.2.1 * Avoid inspecting links except for Cray platforms * Always return string paths from compiler properties * Improved name-based filtering (apt-based packages)
2020-08-13IOR package: added 3.3.0rc1 and develop version (#18036)Nikolay Simakov1-1/+3
* IOR package: added 3.3.0rc1 and develop version * IOR package: reordered versions, set 3.2.1 as preferred
2020-08-13Make mpich buildable without fortran (#17964)Harmen Stoppels1-12/+29
When the user explicitly sets ~fortran, mpich builds without fortran support. This will make building C/C++ libraries using clang easier, since clang does not offer a fortran compiler by default (yet). Since the user has to disable Fortran support explicitly, this change is not breaking.
2020-08-13update vtk-h release (#18052)Matt Larsen1-0/+1
2020-08-13llvm: added external detection capabilities (#17989)Massimiliano Culpo1-2/+107
* llvm: added external detection capabilities * Added comment with reference to external package detection docs * Fix typo in a comment
2020-08-13gotcha: fixed building v0.0.2 on ARM (#18012)h-denpo2-20/+4
2020-08-12eztrace: add space, --linkfortran, -Wl (#17801)ketsubouchi1-0/+20
2020-08-12Axom + Conduit updates (#17863)Chris White2-10/+27
* Loosen Axom's variants, add shared variant for axom, fix clang/xlf rpath'ing problem on blueos * Fix flake8 * Add main branch to list of known git branches
2020-08-12mpich, mvapich2: fixed setup_*_environment (#18032)Massimiliano Culpo2-4/+8
fixes #18028 Since now external packages support multiple modules the correct thing to do is to check if the name of the *first* module to be loaded contains the string "cray"
2020-08-12Make the build stage of OpenSSL parallel (#18024)Harmen Stoppels1-4/+4
2020-08-12libpciaccess: New version 0.16 (#18035)Erik Schnetter1-0/+1
2020-08-12cmake: Add version 3.16.3 (#18034)Erik Schnetter1-0/+1
`cmake @3.16.3` is the version provided by Ubuntu 20.04. Adding this version here avoids the warning ``` ==> Warning: Missing a source id for cmake@3.16.3 ``` when using the system `cmake`.
2020-08-12Spack recipes for ROCm software components-Phase1 (#17422)srekolam26-0/+1027
* Spack recipes for ROCm Stage 1 Build components * fix flake8 errors * fixes for flake8 errors * Add a patch for cmake 3.x suport * Fix rpath issue where hsa-rocr-dev does not allow it to be filled in by spack * Remove inherited cmake args from comgr * Make hsakmt-roct compile: no -Werror because with const cast in numa, and actually add the numa dependency * Remove redundant cmake args which is inherited * Fix some dependencies * Fix some python 2.x compatibilities * Add amd gpu targets to rocfft * Make comgr a link dep of rocm-dbgapi and remove redundant cmake args * Remove redundant cmake args * Remove more redundant cmake args * Final redundant args * Use cmake 3.x instead of a fixed version * Remove random variable * Use installed rocclr instead of nonexisting directory * Don't build outside the staging folder * Deploy some missing cmake target file * Formatting * Fix target list * Properly handle the rocclr dependency * Formatting * Fix vermin test * Make all 3.5.0 package depend exactly on eachother * Add a few missing link dependencies * Fix flake8 * Remove some other redundant flags * Add gcc install prefix for gcc builds of llvm-amdgpu * review changes for the spack recipes * Do not hard-code versions * Fix atmi install - no more relative rpaths outside of install directory (required patch) - fix build -> link dependencies - remove unused build dependency * Fix flake8 errors * Remove unused variable and make things python 2.x compatible * Fix flake8 * Move compiler config from rocfft -> hipcc * Remove redundant dependency on fftw-api * Remove redundant import * Avoid hitting the ROCM_PATH variable altogether with a patch; also just fill in all variables * Add missing deps z3, zlib and ncurses+termlib to llvm-amdgpu * Fix perl shebang and add dep * Fix typo and patch HIP_CLANG_ROOT detection in hip's cmake files * fixing build failure due z3 and adding zlib for rocgdb * new changes to add z3,curses dependency for llvm-amdgpu * fix flake8 error Co-authored-by: root <root@localhost.localdomain> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-12petsc: add explicit build dependency: diffutils (#17979)eugeneswalker1-0/+2
2020-08-12Update FleCSPH package (#17997)Julien Loiseau1-9/+18
* Update FleCSPH package * Flake8 corrections * Update FleCSI version
2020-08-12Adding externals support for CUDA. (#18011)Robert Blake1-0/+10
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-08-12Use configure-release instead of configure for UCX (#17941)Jon Rood1-2/+4
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-12librsb: added v1.2.0.9 (#18015)Michele Martone1-1/+2
2020-08-12weechat: added new package at v2.9 (#17996)Andrew W Elble1-0/+53
2020-08-12ParaView: added v5.8.1 (#17995)Ethan Stam1-0/+1
2020-08-12Bugfix for #17999: use cudart instead of cuda. (#18000)Robert Blake1-1/+1
This is needed because libcuda is used by the driver, whereas libcudart is used by the runtime. CMake searches for cudart instead of cuda. On LLNL LC systems, libcuda is only found in compat and stubs directories, meaning that the lookup of libraries fails.
2020-08-12podio: added dependency on jinja2 for newer versions (#17990)Thomas Madlener1-0/+1
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