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2021-04-06libpcap: add v1.10.0, v1.9.1 (#22741)darmac1-1/+3
2021-04-06capnproto: add v0.8.0 (#22743)darmac1-0/+1
2021-04-06spark: add v3.1.1, v3.0.2, v3.0.2, v2.4.7 (#22753)Robert Mijakovic1-0/+4
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-04-06anaconda3: add v2020.11 (#22576)Tiziano Müller1-0/+1
2021-04-06r-assertive-base: new package (#22780)Jen Herting1-0/+24
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-06fltk: add explicit dependency on gl and a variant to activate it (#22761)Amiya Maji1-0/+9
* The fltk package can build libraries with opengl support. By default, the configure script looks for opengl headers in the sytem include paths. If 'devel' packages have not been installed on the system it omits the 'ftlk_gl.so' library. This can break packages like 'octave' which expects 'fltk' to have opengl support and looks for the library 'fltk_gl'. Make opengl support explicit in fltk by adding a dependency on 'gl' and adding a new variant of the same name 'gl' (default On). With these modifications 'fltk_gl' and 'octave' build successfully on CentOS8. The default behavior is to always enable opengl. https://www.fltk.org/doc-1.3/intro.html
2021-04-06seacas: add v2021-04-05 (#22784)Greg Sjaardema1-0/+1
2021-04-06openmpi: allow to build with ^slurm ~pmi for >3.0.0 with PMIx (#22086)Andrew W Elble1-2/+6
2021-04-06hydrogen, lbann: forward the CXXFLAGS to the HIP_HIPCC_FLAGS variable. (#22744)Brian Van Essen2-2/+5
2021-04-06zstd: add v1.4.9, switch to cmake to configure more easily (#22668)Harmen Stoppels1-37/+33
Also: - Add variants to control the build - Add a maintainer - Add master version
2021-04-06hdf5: patch for BOZ literal constant error when compiled with GCC 10. (#22509)Robert Mijakovic2-0/+17
2021-04-06doxygen: add version restriction (#22773)Seth R. Johnson1-1/+2
This triggered on my mac because clingo seems to have bootstrapped a very old version distributed by apple.
2021-04-06stress-ng: new package (#22777)Andrew W Elble1-0/+46
2021-04-06Add patch for latest hwloc@:1 to locate ncurses (#22776)Harmen Stoppels2-2/+36
* Add patch for latest hwloc@:1 to locate ncurses This way we don't have to depend on ncurses~termlib, which may run into issues when another package explicitly depends on ncurses+termlib * Move termcap to the back, cause it's a system symlink on macos and isn't set by spack
2021-04-06gpu-burn: add v1.1 and "master" (#22778)Andrew W Elble2-43/+18
2021-04-06rnaquast: add new package (#22648)Desmond Orton1-0/+37
2021-04-06trf: add v4.09.1 and other updates (#22782)Glenn Johnson1-5/+26
- add new version, 4.09.1 - use github url - convert to autotools package - deprecate version 4.07b: This version requires manual download and is a binary only installation.
2021-04-06repeatmasker: update and fix package (#22785)Glenn Johnson1-12/+23
- version 4.0.7 was not building - version 4.0.9 was not setting search correctly due to an extra "return" in config - added version 4.1.2-p1 - new version needs py-h5py - new version does not need utf8 patch - url format changed
2021-04-06hmmer: add v3.3.2 (#22787)Glenn Johnson1-1/+2
2021-04-06exabayes: add v1.5.1 (#22789)Andrew W Elble1-3/+2
2021-04-06libfabric: add v1.12.1 (#22790)Axel Huebl1-0/+1
Add latest patch release to fix build issues with unconditional usage of `infiniband/ib.h`
2021-04-04qt: backport build issue fix on 5.14 due to isystem (#22772)Valentin Volkl2-0/+108
2021-04-03rankstr: add v0.0.3 (#22763)Cameron Stanavige1-1/+2
2021-04-02New package: r-anytime (#22624)Jen Herting1-0/+25
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-02New package: r-pheatmap (#22617)Jen Herting1-0/+24
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-02New package: r-amelia (#22623)Jen Herting1-0/+27
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-02New package py-gffutils (#22552)Desmond Orton1-0/+30
2021-04-02Ascent: CUDA ~shared (#22760)Axel Huebl2-1/+10
Add a conflict for CUDA and shared libraries in Ascent. The new concretizer will automatically change the default for Ascent in that case. Until then, dependencies like WarpX need to hint the `~shared` wish explicitly.
2021-04-02WarpX: 21.04 (#22740)Axel Huebl2-0/+9
Update WarpX: add first tagged version.
2021-04-02py-wheel: new version (#22751)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-04-02igprof: new package (#22666)iarspider2-0/+165
2021-04-02sandbox: add build dependency on gawk (#22748)darmac1-0/+2
2021-04-02nekRS: new package (#22519)Thilina Rathnayake1-0/+141
This initial package recipe uses a custom-built wrapper to drive an internal CMake file. Since nekRS also includes built-in copies of several dependencies such as BLAS and HYPRE, it cannot be linked with other such dependencies. However, to work with the `ceed` metapackage, we cannot add `^blas` conflicts to nekRS. See https://github.com/spack/spack/pull/22519 for discussion.
2021-04-01axom: convert to Cached CMakePackageChris White2-357/+185
This updates axom to use the new CachedCMakePackage superclass. Co-authored-by: Greg Becker <becker33@llnl.gov>
2021-04-01Revert "CachedCMakePackage for using *.cmake initial config files (#19316)""Todd Gamblin2-185/+357
This reverts commit 7daf5823574dc18522f559a084095714cc9f3fb9.
2021-04-01Added ML Suite to ECP Proxy App Suite (#22728)Robert Pavel1-0/+8
2021-04-01argobots: add Argobots 1.1 and 1.0.1 (#22729)Shintaro Iwasaki1-0/+2
2021-04-01Update SLEPc and slepc4py to version 3.15 (#22714)Jose E. Roman4-2/+47
Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2021-04-01Fix for static library export issue in blis package (#22673)AMD Toolchain Support1-1/+4
2021-04-01gdal package needs to import the 'os' module (#22731)Amiya Maji1-0/+2
* 'gdal+java' build needs to import the 'os' module (line 191). * Make style-check happy.
2021-04-01Fix pkgconfig dependencies (#22702)Michael Kuhn4-4/+4
pkgconfig is the correct virtual provider.
2021-04-01mpark-variant: ICC Patch (#22727)Simon Bolding2-0/+36
* Add patch for Intel C++ compiler - On some machines (in particular MacOSX Catalina), the icpc in some way utilizes the preprocessor of the associated "developer tools" used by icpc. This leads to, in some cases, a preprocessor claiming support for __tuple_element_packs, even though icpc (as of version 21.1) can't actually parse such code. Just use the MPARK_TUPLE_ELEMENT_PACK impl with __icc until icpc supports it, to avoid issues with developer tools that are untested. - The same patch has been PRed against mpark-variant
2021-04-01amrex: new version 21.04 (#22730)mic841-1/+2
2021-04-01xSDK: add ArborX (#22619)Daniel Arndt1-0/+3
2021-04-01New version of OpenLoops (#22240)iarspider3-43/+264
New version of OpenLoops; new list of processes; update lcg process collection Add script to scrape openloops website for process list
2021-04-01arm-forge: cleanup and upgrade to forge v21.0 (#22015)Nick Forrington1-109/+21
Backwards incompatible cleanup to target single-tarball-per-arch builds going forwards. * Replace per-distro versions with new per-arch builds, and add url_for_version to avoid specifying per tarball. * Customise environment setup to avoid adding lib to LD_LIBRARY_PATH. * Update homepage and licensing URLs. * Avoid shell interpretation when running textinstall.sh. * Added NickRF as maintainer.
2021-04-01Extra environment variables for Qt (#22717)iarspider1-0/+6
2021-04-01Fenicsx package updates for basix install (#22679)Chris Richardson5-9/+34
Co-authored-by: Garth N. Wells <gnw20@cam.ac.uk>
2021-04-01py-cython: new version (#22712)Robert Mijakovic1-0/+1
Co-authored-by: Robert Mijakovic <robert.mijakovic@lrz.de>
2021-04-01gchp: add version 13.0.1 and remove release candidate (#22572)William Downs1-4/+4
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