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2023-10-05ecFlow update (#40305)Alex Richert1-5/+41
* Support static openssl for ecflow * Update ecflow/static openssl * Update ssl settings in ecflow * add pic variant for ecflow * style fix * Update package.py * Update package.py
2023-10-05pbmpi: adding new version and maintainer (#40319)snehring1-0/+5
2023-10-05whizard: Make sure to detect LCIO if requested (#40316)Thomas Madlener1-0/+2
2023-10-05Add pika 0.19.0 (#40313)Auriane R1-0/+1
2023-10-05exago: add and logging variant. (#40188)Cameron Rutherford2-5/+9
2023-10-04trilinos: add variant to build tests (#40284)eugeneswalker1-0/+7
* trilinos: add variant: testing * trilinos: rename +testing to +test
2023-10-04yaksa: Allow unsupported host compiler with CUDA (#40298)Ken Raffenetti1-0/+2
Fixes #40272.
2023-10-04Damaris release v1.9.2 (#40285)Josh Bowden1-2/+7
* Update to latest dot versions and improved installation of Damaris python module damaris4py * fix for visit dependency typo * whitespace check * whitespace check * fix for style issue * reviewer suggestions for integrating Python added * suggestion for boost depends statement added
2023-10-04Add new package awscli-v2 and its missing dependency awscrt (#40288)Dom Heinzeller2-0/+50
* Add new package awscli-v2 and its missing dependency awscrt * Remove boilerplate comments from awscli-v2 and awscrt packages * Fix typos in var/spack/repos/builtin/packages/awscli-v2/package.py * Update var/spack/repos/builtin/packages/awscli-v2/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/awscli-v2/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/awscli-v2/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/awscli-v2/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/awscli-v2/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Address reviewer comments * Remove py-pip version dependency from var/spack/repos/builtin/packages/awscli-v2/package.py --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-04py-isort: needs setuptools build dep before v5 (#40234)Harmen Stoppels2-1/+5
* py-isort: needs setuptools build dep before v5 Detected in #40224. In the past, system setuptools could be picked up when using an external python, so py-isort@4 would install fine. With the linked PR, pip can only consider packages that Spack controls from PYTHONPATH, so the issue of missing py-setuptools showed up. * py-importlib-metadata: fix lowerbounds on python * review * py-isort unconditionally add optional setuptools dep to prevent picking up user package at runtime * style * drop optional py-setuptools run dep
2023-10-04py-einops: add v0.7.0 (#40296)Adam J. Stewart1-0/+2
2023-10-04petsc: add conflict on rocm 5.6: for now (#40300)Harmen Stoppels1-0/+4
hipsparse@5.6.0 changed hipsparseSpSV_solve() API, but reverted in 5.6.1
2023-10-03ADIOS2: v2.8 is not compatible with HDF5 v1.14: (#40258)kwryankrattiger1-0/+1
2023-10-03fix_qgis_build_with_pysip5 (#39941)Sinan1-8/+46
* fix_qgis_build_with_pysip5 * build fails with newer protobuf * somehow findgdal can figure this out. * Update var/spack/repos/builtin/packages/qgis/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * fix gdal lib again * qgis needs QtPositioning provided by qt+location option * fix FindPyQt5 cmake file * fix bug * fix qsci sip issue * fix bug * blackify * improve * add latest LTR * add build dep * revert until bug is fixed * specify proj version for qgis 3.28 * improve gdal libs search via indicating gdal-config * make flake happy * improve deps * add 3.28.11, improve style * fix style * [@spackbot] updating style on behalf of Sinan81 --------- Co-authored-by: Sinan81 <Sinan@world> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-10-03falco: new package @1.2.1 (#40289)George Young1-0/+26
* falco: new package @1.2.1 * specifying gmake * Replacing homepage - readthedocs is empty --------- Co-authored-by: LMS Bioinformatics <bioinformatics@lms.mrc.ac.uk>
2023-10-03py-tables: add v3.8.0 (#40295)Adam J. Stewart3-12/+69
2023-10-03[add] py-graphene: new recipe, required by py-cylc-flow (#39988)Lydéric Debusschère1-0/+23
2023-10-03Fix binutils regression on +gas~ld fix (#40292)Jordan Galby1-7/+9
2023-10-03py-biom-format: Fix package file issues and bring up to date (#39962)Gavin John1-9/+19
* Fix python versioning issue for py-biom-format * Update deps according to feedback * Remove version requirement for py-cython Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Only depend on py-six for versions >=2.1.10 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Add py-future as non-dependency for 2.1.15 * There we are. Everything anyone could ever want * Missed cython version change Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-03Adding dynaconf module (#39762)GeorgeJuniorGG1-0/+18
* Adding dynaconf module * Fixing style * Adding dependency
2023-10-03py-yarl: add 1.9.2 (#40277)Manuela Kuhn1-4/+4
2023-10-03py-dipy: Update version to support python@3.10 (#40229)Tom Payerle1-0/+6
* py-dipy: Update version to support python@3.10 py-dipy only adds support to python@3.10 in py-dipy@1.5.0 See #40228 * py-dipy: fix formatting issues * py-dipy: another formatting fix * py-dipy: Use depends instead of conflicts * py-dipy: formatting fix * py-dipy: Updating for @1.7.0 Added new minimum version requirements for py-cython py-numpy py-scipy py-h5py as suggested by @manuelakuhn (py-nibabel min version unchanged for @1.7.0)
2023-10-03py-wcwidth: add 0.2.7 (#40256)Manuela Kuhn1-0/+2
2023-10-03py-virtualenv: add 20.24.5 (#40255)Manuela Kuhn4-19/+32
* py-virtualenv: add 20.22.0 * py-platformdirs: add 3.5.3 * py-filelock: add 3.12.4 * py-distlib: add 0.3.7
2023-10-03py-websocket-client: add 1.6.3 (#40274)Manuela Kuhn1-19/+16
2023-10-03py-werkzeug: add 2.3.7 and 3.0.0 (#40275)Manuela Kuhn1-2/+15
2023-10-03py-wrapt: add 1.15.0 (#40276)Manuela Kuhn1-2/+1
2023-10-03py-libEnsemble: add v1.0.0 (#40203)Stephen Hudson1-15/+22
* py-libEnsemble: add v1.0.0 * Add version ranges for deps * Add comments to variants * Put when before type * Fix line lengths * Re-format * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com> --------- Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-10-03[add] py-graphql-relay: new package (#39807)Lydéric Debusschère2-1/+27
* [add] py-graphql-relay: new package * py-graphql-relay: Update package.py Remove leftovers from version 3.2.0: * archive name in pypi * dependencies * [fix] py-graphql-relay: remove constraint on python version; add dependence py-rx because of ModuleNotFoundError during spack test * [fix] py-graphql-relay: remove py-rx dependence; py-graphql-core: add dependencies for version 2.3.2 * py-graphql-core: Update from review; set build backend, py-poetry for version 3: and py-setuptools for version 2 Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> --------- Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-10-03[add] py-metomi-isodatetime: new recipe, required by py-cylc-flow (#39990)Lydéric Debusschère1-0/+19
* [add] py-metomi-isodatetime: new recipe, required by py-cylc-flow * py-metomi-isodatetime: use sources from pypi instead of github
2023-10-02Add AdditiveFOAM package (#39295)Sam Reeve3-0/+68
* Add AdditiveFOAM package * Add AdditiveFOAM build and install Co-authored-by: kjrstory <kjrstory@gmail.com> Co-authored-by: Knapp, Gerry <knappgl@ornl.gov> --------- Co-authored-by: kjrstory <kjrstory@gmail.com> Co-authored-by: Knapp, Gerry <knappgl@ornl.gov>
2023-10-02py-torchgeo: add v0.5.0 (#40267)Adam J. Stewart1-97/+107
* py-torchgeo: add v0.5.0 * Better documentation of dependency quirks
2023-10-02vtk-m@2.0: depend on kokkos@3.7:3.9 per issue #40268 (#40281)eugeneswalker1-0/+1
2023-10-02Add ipm package (#40069)Christoph Weber2-0/+140
2023-10-02Rocm 5.6.0 & 5.6.1 release updates (#39673)renjithravindrankannath53-61/+4047
* 5.6.0 updates * Rocm 5.6.0 updates * Style and audit corrections for 5.6 * Patching smi path for tests. * Style correction * 5.6.1 updates * Updated hip tests for ci build failure Updated hiprand with the release tag Taken care the review comment rocsolver * Adding rocm-smi path for 5.6 * Adding the patch file * Setting library directory uniform * gl depends on mesa but it should not be llvm variant * Fix for the issue 39520 by setting CMAKE_INSTALL_LIBDIR=lib * i1 muls can sometimes happen after SCEV. They resulted in ISel failures because we were missing the patterns for them. * 5.6.0 & 5.6.1 updates for migraphx, miopen-hip, mivisionx * Revert "5.6.0 & 5.6.1 updates for migraphx, miopen-hip, mivisionx" This reverts commit f54c9c6c67a4e5a54859f59d6550eb8e542d6c26. * Revert operator mixup fix * Splitting compiler-rt-linkage-for-host and operator mixup patch * Adding missing patch for reverting operator mixup * 5.6 update for composable-kernel,migraphx,miopen-hip and mivisionx * Updating rvs, rcd and rccl for 5.6.1. adding comment for llvm patch
2023-10-02fix lhapdf package (#37384)Joseph Wang1-0/+9
* fix lhapdf package * [@spackbot] updating style on behalf of joequant --------- Co-authored-by: joequant <joequant@users.noreply.github.com>
2023-10-02Implemented +sycl for slate (#39927)G-Ragghianti3-4/+65
* Implemented +sycl for slate * style * style * add slate +sycl to ci * slate +sycl: explicitly specify +mpi * comment out slate+sycl+mpi in e4s oneapi stack * removing requirement of intel-oneapi-mpi * Added slate+sycl to e4s oneapi stack * Removing obsolete comment --------- Co-authored-by: eugeneswalker <eugenesunsetwalker@gmail.com>
2023-10-02libtirpc: Add latest version and allow for builds on macOS (#40189)Thomas Madlener2-4/+124
2023-10-02py-importlib-metadata: add patch releases (#40249)Harmen Stoppels1-0/+3
importlib_metadata 4.11.4 fixes some nasty issues with `metadata.entry_points(...)`, so ensure we have those bugfixes.
2023-10-02Cgns fix no fortran config (#40241)Greg Sjaardema1-3/+3
* SEACAS: Update package.py to handle new SEACAS project name The base project name for the SEACAS project has changed from "SEACASProj" to "SEACAS" as of @2022-10-14, so the package needed to be updated to use the new project name when needed. The refactor also changes several: "-DSome_CMAKE_Option:BOOL=ON" to define("Some_CMAKE_Option", True) * CGNS: If fortran not enabled, do not specify parallel fortran compiler * Update package formatting as suggested by black * Accept suggested change
2023-10-02discotec package: add selalib variant (#40222)Freifrau von Bleifrei1-0/+3
2023-10-02zoltan: Fixes for #40198 (#40199)Tom Payerle1-12/+31
Fix issue in configure_args which resulted in duplicate "--with-ldflags" arguments (with different values) being passed to configure. And extended the fix to similar arguments. Also, repeated some flags to "--with-libs" to "--with-ldflags" as when the flags were only in "--with-libs", they did not seem to be picked up everywhere. I suspect this is a bug in the configure script, but adding to both locations seems to solve it and should not have any adverse effects. Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2023-10-02xv: new package (#40032)Sinan1-0/+29
Co-authored-by: Sinan81 <Sinan@world>
2023-10-02add maintainers to py-nanobind (#40235)Matthew Archer1-1/+1
2023-10-02cabana: add v0.6 (#40168)Sam Reeve1-4/+25
2023-10-02perl-dbd-mysql update to 4.050 (#40245)snehring2-0/+22
* perl-devel-checklib: adding new package perl-devel-checklib * perl-dbd-mysql: adding new version 4.050 and a new build dep
2023-10-02petsc,py-petsc4py,slepc,py-slepc4py: add version 3.20.0 (#40260)Satish Balay4-40/+23
2023-10-02libxkbcommon: new versions 1.4.1, 1.5.0 (#40273)Wouter Deconinck1-0/+5
2023-10-02amrex: add v23.10 (#40270)Weiqun Zhang1-0/+1
2023-10-02assimp: new version 5.3.1 (#40271)Wouter Deconinck1-0/+1
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