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2018-11-19Add UCX v1.4.0 (#9881)Daniel Topa1-1/+3
Verification build dantopa@darwin-fe2.lanl.gov:pr.ucx.spack $ spack install ucx % gcc @ 4.8.5 ==> Installing libsigsegv ==> Installing m4 ==> Installing pkgconf ==> Installing ncurses ==> Installing readline ==> Installing gdbm ==> Installing perl ==> Installing autoconf ==> Installing automake ==> Installing libtool ==> Installing numactl ==> Installing zlib ==> Installing openssl ==> Installing diffutils ==> Installing bzip2 ==> Installing xz ==> Installing libxml2 ==> Installing tar ==> Installing gettext ==> Installing help2man ==> Installing bison ==> Installing flex ==> Installing libnl ==> Installing rdma-core ==> Installing ucx ==> Successfully installed ucx Fetch: 1.17s. Build: 40.59s. Total: 41.76s. [+] /scratch/users/dantopa/new-spack/pr.ucx.spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/ucx-1.4.0-ilfonxj2f5my4ur65li3sr7kuvfg3kim dantopa@darwin-fe2.lanl.gov:pr.ucx.spack $ spack spec ucx Input spec -------------------------------- ucx Concretized -------------------------------- ucx@1.4.0%gcc@4.8.5 arch=linux-centos7-x86_64 ^numactl@2.0.11%gcc@4.8.5 patches=592f30f7f5f757dfc239ad0ffd39a9a048487ad803c26b419e0f96b8cda08c1a arch=linux-centos7-x86_64 ^autoconf@2.69%gcc@4.8.5 arch=linux-centos7-x86_64 ^m4@1.4.18%gcc@4.8.5 patches=3877ab548f88597ab2327a2230ee048d2d07ace1062efe81fc92e91b7f39cd00,c0a408fbffb7255fcc75e26bd8edab116fc81d216bfd18b473668b7739a4158e,fc9b61654a3ba1a8d6cd78ce087e7c96366c290bc8d2c299f09828d793b853c8 +sigsegv arch=linux-centos7-x86_64 ^libsigsegv@2.11%gcc@4.8.5 arch=linux-centos7-x86_64 ^perl@5.26.2%gcc@4.8.5+cpanm patches=0eac10ed90aeb0459ad8851f88081d439a4e41978e586ec743069e8b059370ac +shared+threads arch=linux-centos7-x86_64 ^gdbm@1.18.1%gcc@4.8.5 arch=linux-centos7-x86_64 ^readline@7.0%gcc@4.8.5 arch=linux-centos7-x86_64 ^ncurses@6.1%gcc@4.8.5~symlinks~termlib arch=linux-centos7-x86_64 ^pkgconf@1.5.4%gcc@4.8.5 arch=linux-centos7-x86_64 ^automake@1.16.1%gcc@4.8.5 arch=linux-centos7-x86_64 ^libtool@2.4.6%gcc@4.8.5 arch=linux-centos7-x86_64 ^rdma-core@20%gcc@4.8.5 build_type=RelWithDebInfo arch=linux-centos7-x86_64 ^cmake@3.12.4%gcc@4.8.5~doc+ncurses+openssl+ownlibs patches=dd3a40d4d92f6b2158b87d6fb354c277947c776424aa03f6dc8096cf3135f5d0 ~qt arch=linux-centos7-x86_64 ^openssl@1.0.2o%gcc@4.8.5+systemcerts arch=linux-centos7-x86_64 ^zlib@1.2.11%gcc@4.8.5+optimize+pic+shared arch=linux-centos7-x86_64 ^libnl@3.3.0%gcc@4.8.5 arch=linux-centos7-x86_64 ^bison@3.0.5%gcc@4.8.5 arch=linux-centos7-x86_64 ^diffutils@3.6%gcc@4.8.5 arch=linux-centos7-x86_64 ^help2man@1.47.4%gcc@4.8.5 arch=linux-centos7-x86_64 ^gettext@0.19.8.1%gcc@4.8.5+bzip2+curses+git~libunistring+libxml2 patches=9acdb4e73f67c241b5ef32505c9ddf7cf6884ca8ea661692f21dca28483b04b8 +tar+xz arch=linux-centos7-x86_64 ^bzip2@1.0.6%gcc@4.8.5+shared arch=linux-centos7-x86_64 ^libxml2@2.9.8%gcc@4.8.5~python arch=linux-centos7-x86_64 ^xz@5.2.4%gcc@4.8.5 arch=linux-centos7-x86_64 ^tar@1.30%gcc@4.8.5 arch=linux-centos7-x86_64 ^flex@2.6.3%gcc@4.8.5+lex arch=linux-centos7-x86_64 Environment: dantopa@darwin-fe2.lanl.gov:pr.ucx.spack $ echo $HOSTNAME darwin-fe2.lanl.gov dantopa@darwin-fe2.lanl.gov:pr.ucx.spack $ grep -i 'model name' /proc/cpuinfo | sort | uniq model name : Intel(R) Xeon(R) CPU E5-2695 v3 @ 2.30GHz dantopa@darwin-fe2.lanl.gov:pr.ucx.spack $ lsb_release -d -bash: lsb_release: command not found dantopa@darwin-fe2.lanl.gov:pr.ucx.spack $ uname -a Linux darwin-fe2.lanl.gov 4.18.8-1.el7.elrepo.x86_64 #1 SMP Sat Sep 15 10:10:09 EDT 2018 x86_64 x86_64 x86_64 GNU/Linux dantopa@darwin-fe2.lanl.gov:pr.ucx.spack $ date Mon Nov 19 10:47:47 MST 2018 dantopa@darwin-fe2.lanl.gov:pr.ucx.spack $ pwd /scratch/users/dantopa/new-spack/pr.ucx.spack Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2018-11-19new package: mongo-cxx-driver (#9880)Andrea Negri1-0/+18
* new package: mongo-cxx-driver * fixed url
2018-11-19samtools: make zlib/bzip2 dependencies unconditional (#9866)Eric1-2/+2
2018-11-18libmongoc: updated versions (#9877)Andrea Negri1-2/+8
2018-11-18New package: ecFlow, a work flow manager. (#9867)Alberto Chiusole1-0/+30
* New package: ecFlow, a work flow manager. * Fix pep8 style issues.
2018-11-17Add +x variant to petsc. (#9830)Sajid Ali1-1/+9
* modified: var/spack/repos/builtin/packages/petsc/package.py * Update package.py * Update package.py * Update package.py * Update package.py
2018-11-17mixcr: Added a new package for MiXCR. (#9864)simo-tuomisto1-0/+29
* mixcr: Added a new package for MiXCR. * mixcr: Fixed spack license string.
2018-11-16lammps package: added new versions (#9868)Christoph Junghans1-0/+7
2018-11-16py-cython: add new versions (#9846)Sinan1-0/+2
2018-11-16new package: r-gensa (starting at 1.1.7) (#9858)Justin Stanley1-0/+21
2018-11-16py-ply: fix download url (#9862)Eric1-2/+2
2018-11-16vt package: add zlib dependency (#9870)Eric1-0/+2
2018-11-16r-rgl: update url, add new version (#9796)Levi Baber1-1/+5
2018-11-15py-cffi: add missing pkgconfig dependency (#9784)Michael Kuhn1-0/+1
2018-11-15py-cryptography: add 2.3.1 (#9785)Michael Kuhn1-0/+2
Required for openssl@1.1 compatibility.
2018-11-15krb5: add missing bison dependency for yacc (#9778)Michael Kuhn1-0/+1
2018-11-15globus-toolkit: add missing pkgconfig dependency (#9775)Michael Kuhn1-0/+1
2018-11-15Fix and update verrou (#9847)Hadrien G1-2/+14
* Fix verrou-python integration * Add verrou 2.1.0 * Patch level changed in v2.1.0
2018-11-15dbcsr: minor fixes due to upstream changes (#9799)Denis Davydov1-2/+3
2018-11-15Updated protobuf and py-protobuf to version 3.6.1 (#9536)Leonhard Reichenbach2-2/+5
* Updated protobuf and py-protobuf to version 3.6.1 also updated the download link as the repository has moved * protobuf: modified conflict
2018-11-14Add GMT, CitcomS, and fstrack packages (#9768)Adam J. Stewart8-0/+328
* Add initial packages for citcoms and dependencies * Ignore Pythia imports * Add py-merlin package * Add GMT package * Fixes to get GMT working * Get hc package building * Get CitcomS 3.2.0 working * Add fstrack package * Fix hash
2018-11-14r-cairo: new package (#9794)Levi Baber1-0/+20
* r-cairo: new package * Update var/spack/repos/builtin/packages/r-cairo/package.py Co-Authored-By: baberlevi <baberlevi@gmail.com>
2018-11-14Argobots: added @develop version and +valgrind variant (#9664)dorier1-0/+19
* added develop version in argobots package and added valgrind variant * made autotools required only for develop version * corrected style * Added --disable-valgrind Added --disable-valgrind to explicitly disable it when +valgrind isn't provided.
2018-11-14r-phytools: new package at 0.6-60 (#9766)Justin Stanley1-0/+32
* r-phytools: new package at 0.6-60 * r-phytools: add list_url * r-phytools: add deps, dep versions
2018-11-14openblas: add headers property (#9831)Geoffrey Oxberry1-0/+9
This commit adds only the public headers from the full list of headers installed by OpenBLAS; this list of headers is the same as in netlib-lapack.
2018-11-14elfutils: add version 0.174. (#9812)Mark W. Krentel1-0/+11
Pass cflags to configure so that configure gets the values from the spack install line. Disable -Werror so that we don't fail the build over a stray warning.
2018-11-14libunwind: add version for current snapshot (#9770)Mark W. Krentel1-0/+12
Libunwind releases are few and far between, so we need access to recent snapshots from the git repository. Pass cflags to configure so that make will respect the value from the spack install line.
2018-11-14netcdf-fortran: add LDFLAGS to fix contents of libnetcdff.la. (#9647)Sergey Kosukhin1-3/+10
2018-11-14new package: time (#9842)Levi Baber1-0/+19
2018-11-13node-js: add 10.13.0 and 11.1.0 (#9781)Michael Kuhn1-5/+8
Required for openssl@1.1 compatibility.
2018-11-13cmake: add 3.12.4 (#9758)Michael Kuhn1-0/+1
2018-11-13perl-net-ssleay: fix build (#9783)Michael Kuhn1-2/+3
- Add 1.85 - OPENSSL_PREFIX has to be set in the environment, otherwise Spack's openssl will not be found
2018-11-13erne: new package starting at 2.1.1 (#9676)Justin Stanley1-0/+36
* erne: new package starting at 2.1.1 * erne: remove unused configure args * erne: remove unused prefix arg * erne: add explicit mpi disable
2018-11-13Fix #9673 : build fonts on powerpc architecture (#9683)Luigi Calori2-8/+2
* use AutotoolsPackage so config.guess get updated by autoreconf step, fix build problem on ppc #9673 * same error, same fix under ppc arch
2018-11-13added r-bindr v 0.1.1 (#9717)Douglas Duckworth1-1/+2
2018-11-13r-genomeinfodbdata: url fix (#9732)Levi Baber1-1/+1
2018-11-13intel-parallel-studio: add missing updates (#9742)Matthias Diener2-2/+15
* intel-parallel-studio: add missing updates * add 2018.4
2018-11-13Packages/trinotate fix (#9745)Levi Baber1-0/+7
* trinotate: fix perl location * trinotate: not where that is * trinotate: glob * trinotate: needs perl-dbd-sqlite
2018-11-13Add pic variant to cflags in boost. (#9750)Alberto Chiusole1-2/+6
* Add pic variant to cflags in boost. * Improve description in pic variant of boost, see #9750.
2018-11-13new version (#9752)Miles Perry1-0/+2
2018-11-13glib: add 2.56.3 (#9754)Michael Kuhn1-0/+1
2018-11-13sqlite: add 3.25.3 (#9756)Michael Kuhn1-1/+3
2018-11-13gdbm: add 1.18.1 (#9757)Michael Kuhn1-0/+1
2018-11-13lmdb: add 0.9.22 (#9759)Michael Kuhn1-0/+1
2018-11-13eospac version bump (#9763)Daryl W. Grunau1-0/+2
2018-11-13r-combinat: new package at 0.0-8 (#9764)Justin Stanley1-0/+16
* r-combinat: new package at 0.0-8 * r-combinat: add list_url
2018-11-13glib: explicitly disable gtk-doc (#9771)Michael Kuhn1-0/+12
glib should not use the globally installed gtk-doc. Otherwise, gtk-doc can fail with Python errors such as `ImportError: No module named site`. This is due to the fact that Spack sets `PYTHONHOME`, which can confuse the global Python installation that is used by gtk-doc.
2018-11-13nginx: add 1.15.6 (#9780)Michael Kuhn1-0/+3
Needed to compile with gcc@8 and recent versions of glibc.
2018-11-13DIAMOND: add version 0.9.22 (#9790)Eric1-0/+1
2018-11-13stringtie: add version 1.3.4d (#9791)Eric1-0/+1
generated by cgit v1.2.3-60-g2f50 (git 2.42.0) at 2024-07-16 09:46:10 +0000