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2022-05-10Add a Lua build-system (#28854)Tom Scogland10-218/+324
Reworking lua to allow easier substitution of the base lua implementation. Also adding in a maintained version of luajit and re-factoring the entire stack to use a custom build-system to centralize functionality like environment variable management and luarocks installation. The `lua-lang` virtual is now versioned so that a package that requires Lua 5.1 semantics can get any lua, but one that requires 5.2 will only get upstream lua. The luaposix package requires lua-bit32, but only when built with a lua conforming to version 5.1. This adds the package, and the dependencies, but exposed a problem with luarocks dependency detection. Since we're installing each package in its own "tree" and there's no environment variable to list extra trees, spack now generates a luarocks config file that lists all the trees of all the dependencies, and references it by setting `LUAROCKS_CONFIG` in the build environment of every LuaPackage. This allows luarocks to find the spack installed dependencies correctly rather than trying (and failing) to download them. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Tom Scogland <tscogland@llnl.gov> Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-09Fix py-numpy #30373 by backporting Numpy PR (#30486)Sam Grayson1-0/+5
* Fix py-numpy #30373 * Update `when` for patch.
2022-05-09sqlite: New version 3.38.5 (#30556)Erik Schnetter1-0/+1
2022-05-09Cutlang: Create package.py (#30535)sabrivatansever1-0/+35
2022-05-09Python: add v3.8.13 and v3.7.13 (#30553)Adam J. Stewart1-0/+2
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-05-09sina: add 1.11 version (#27161)Rebecca Haluska1-0/+1
* sina: add 1.11 version * Moved 1.11 above 1.10
2022-05-09cctools: add 7.4.2 (#28766)Douglas Thain1-1/+15
* Update to cctools-7.4.2 * Add simple patch to remove broken test cases. * import unlink * add maintainers
2022-05-09Added a new patched version for parallelmergetree (#29499)Sergei Shudler1-0/+12
* Added a new patched version for parallelmergetree * Retain older versions instead of replacing them
2022-05-09hipsycl: add v0.9.2 (#30566)Will Saunders1-0/+4
2022-05-09Updated ACfL package to 22.0.1, removing 21 package, as no licence required ↵Oliver Perks1-17/+12
is now false. (#30562)
2022-05-09mpitrampoline: Correct build environment (#30549)Erik Schnetter1-10/+10
2022-05-09simulationio: add v9.0.2 (#30550)Erik Schnetter1-0/+1
2022-05-09py-radiant-mlhub: add new versions (#30555)Adam J. Stewart2-5/+23
2022-05-09py-cartopy: add new versions (#30554)Adam J. Stewart2-34/+87
2022-05-09py-geocube: add v0.3.1 (#30558)Adam J. Stewart2-2/+30
2022-05-09tcl: add v8.6.12 (#30560)Massimiliano Culpo1-0/+1
2022-05-09mpitrampoline: New version 4.0.2 (#30548)Erik Schnetter1-0/+1
2022-05-08openssl: Update to 1.1.1o (#30551)Erik Schnetter1-1/+2
2022-05-09curl: New version 7.83.0 (#30552)Erik Schnetter1-0/+1
2022-05-07Add latest Lmod 8.6, 8.7 (#30542)Derek Ryan Strong1-0/+2
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-05-07gcc: version 12.1.0 (#30537)Harmen Stoppels1-0/+2
2022-05-07Add mochi-margo 0.9.9 (#30539)Phil Carns1-0/+1
- necessary for compatibility with upcoming Mercury 2.2.0 release
2022-05-07Addition of 1.1.9dev version for py-maestrowf (#30523)Francesco Di Natale1-13/+18
* Addition of 1.1.9dev version. * Small style fix -- extra blank line. * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-maestrowf/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Additional dependencies and version constraints. * Revert to py-poetry. * Remove run from cryptography (build only). Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-07Put make() inside a self.run_test call (#30536)Erik1-2/+2
2022-05-07vim: add +gtk variant to pair with +gui (#30520)Ryan Marcellino1-1/+7
* vim: add +gtk3 variant to pair with +gui * address review comments
2022-05-07nmap: fix build issue (#30429)WYF1-0/+3
2022-05-06Eigen: turn on BUILD_TESTING for build to complete (#30528)JDBetteridge1-0/+8
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-05-06Add sphinx-tabs package (#27698)Sebastian Schmitt2-0/+25
* Add py-docutils@0.16 * Add sphinx-tabs package * Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Update var/spack/repos/builtin/packages/py-sphinx-tabs/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-06openspeedshop: fix missing import statement (#30506)Jim Galarowicz2-0/+4
2022-05-06arborx: inherit from CudaPackage, ROCmPackage (#30490)eugeneswalker1-3/+10
2022-05-06boost: add support for alternate boost-context backends (#30496)Thomas Dickerson1-0/+20
The fcontext backend is the default high-performance backend. The ucontext backend is needed when using Boost context in conjunction with ASAN. The WinFibers backend...also exists. https://www.boost.org/doc/libs/1_79_0/libs/context/doc/html/context/cc/implementations__fcontext_t__ucontext_t_and_winfiber.html
2022-05-06level-zero: add new package (#30253)Ken Raffenetti3-2/+43
Co-authored-by: Robert Cohn <rscohn2@gmail.com> Co-authored-by: Robert Cohn <robert.s.cohn@intel.com> Co-authored-by: John Mellor-Crummey <johnmc@rice.edu>
2022-05-06gdb: fix run issue with v9.2 (#30491)WYF1-0/+3
2022-05-06ci: Enable the ParaView GUI in the DAVSDK pipeline (#30473)Chuck Atkins2-0/+23
* ci: Enable the ParaView GUI in the DAVSDK pipeline * qt: Patch for long paths in ci
2022-05-06py-qrcode: new package (#30529)Seth R. Johnson1-0/+24
2022-05-06slurm: add new versions to address CVEs 2022-29500, 2022-29501 and ↵Todd Gamblin1-7/+12
2022-29502 (#30525) Due to CVE 2022-29500, CVE 2022-29501, and CVE 2022-29502, SLURM versions prior to 21.08.8 and 20.11.9 are deprecated. See: * https://www.schedmd.com/news.php?id=260#OPT_260 * https://cve.report/CVE-2022-29500 * https://cve.report/CVE-2022-29501 * https://cve.report/CVE-2022-29502 - [x] Deprecate versions prior to 21.08.8 and 20.11.9 - [x] Add 21-08-8-1, 21-08-8-2, and 20-11-9-1
2022-05-06Added a version for a tag that sets a stable version of master to pull (#30511)Brian Van Essen1-0/+1
2022-05-06Preserve jobserver file descriptors into build environment (#30302)Tom Scogland1-4/+4
This ensures that multiple spack instances called from `make` will respect the maximum number of jobs in the POSIX jobserver across packages. Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-05-05Add two critical fixes and update for version 1.0.4 (#30507)Jim Galarowicz1-5/+11
2022-05-06flux-sched: add patch for signedness compare issue on gcc@9.40 (#30514)Mark Grondona2-0/+14
Problem: GCC 9.4.0 catches a bad integer comparison in resource/hlapi/bindings/c++/reapi_cli_impl.hpp in flux-sched@0.22.0 and current master. Add a patch to work around the problem until an upstream fix is available.
2022-05-05mpich: Add ROCm variant (#30502)Ken Raffenetti1-1/+10
* mpich: Add ROCm variant * fixup
2022-05-05updated stat build dep requirements (#30505)Gregory Lee1-2/+2
2022-05-05neko: Add version 0.3.2 (#30497)Niclas Jansson1-1/+3
* neko: Add version 0.3.2 * Switch to sha256 Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> * Fix url pattern Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-05Enable PyTorch 1.10.x to build on Power systems (#30494)Brian Van Essen1-0/+18
* Use patches from IBM's Open CE project to enable PyTorch to build on Power systems. Cherry-pick a patch to allow earlier versions of PyTorch to build with CUDA 11.4. * Update var/spack/repos/builtin/packages/py-torch/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-05-05package audit: ensure stand-alone test method not include in build-phase ↵Tamara Dahlgren1-2/+2
testing (#30352)
2022-05-05clingo: add v5.5.2 (#30495)Massimiliano Culpo1-12/+14
* clingo add v5.5.2 * Unify dependencies for @spack and @master
2022-05-05Update totalview package.py with new version and maintainer (#30341)David1-3/+22
* Update totalview package.py with new version and maintainer * Update totalview/package.py version order Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com> Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-05-05Bug fix for mesa-glu: if gl is provided by mesa, need to specify argument to ↵Dom Heinzeller1-0/+6
./configure (#30082)
2022-05-05octopus: update to 11.4 and add tests (#30321)Hans Fangohr3-30/+245
* octopus: adding versions up to 11.4 * octopus: add smoke tests * octopus: add necessary flags for gcc@10 * octopus: update to compilation and dependencies * octopus: adding new variants * octopus: remove 'poke' (as this poke is not in spack [yet]) * octopus: allow compilation from git repo develop branch * octopus: adapt to spack style requirements * octopus: add maintainer * octopus: make tests after install optional Thank you @tldahlgren * octopus: follow recommended practice for test input data Move the two configuration files we use for smoke tests into `test` subdirectory. Thanks @tldahlgren. * Adding maintainer with their agreement by email * octopus: reduce duplication of flags - part of code review * octopus: https is preferred over http * octopus: remove .99 from versioning information Thanks to https://github.com/spack/spack/pull/26402, we can drop the "2:3.99" notation when we mean all versions 2.x and 3.x Examples: https://github.com/spack/spack/commit/b9e72557e8b52b63244500f226afda0efe798df2#diff-b8373d30b3a141c495c2281273ee6184fc513413142afaf2adac1f406cd6b0d7 (from review) * octopus: args.extend([x]) -> args.append(x) (hint from review)
2022-05-05yaksa: Add support for cuda_arch variants (#30471)Ken Raffenetti1-0/+5
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