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2016-09-29Add cube variant for building GUI component with qt, parallel built ↵Pramod Kumbhar1-4/+9
supported (#1525)
2016-09-29updated to latest available package and fixed installation issue (old ↵Pramod Kumbhar1-2/+8
packages are no longer available for download) (#1523)
2016-09-29added libxstream (#1454)Mitchell Devlin1-0/+50
2016-09-29Add libint package (#1264)Adam J. Stewart3-5/+127
* Add libint package * Add Intel optimization flags recommended by CP2K * Add new version and Intel compiler optimization flags for libxc * Add older version of libint * Libint depends on GMP C++ library
2016-09-28Library for manipulating grib1 and grib2 files (#1736)Robert D. French1-0/+50
Pro tips from @adamjstewart: * line too long in package description * name it grib-api instead of grib_api * depend on netcdf without reference to unnecessary constraints
2016-09-28py-pil: Protect against building with Python3. (#1868)Elizabeth Fischer1-0/+3
* py-pil: Does not build with Python3. * Set py-pillow to be the default pil provider * Update package.py * Change to comments requested by adamjstewart * Remove version constraint from extends(), avoid a Spack bug.
2016-09-28Update Qthreads to 1.11 (#1863)Erik Schnetter1-2/+3
2016-09-28Fixes #1860. Subversion builds sequentially due to race.Todd Gamblin1-0/+3
2016-09-28vim8 is out! (#1753)Robert D. French1-0/+3
* depends on ncurses for 8.0 or higher
2016-09-28Tell Mercurial where to find CA certs (#1873)Adam J. Stewart1-5/+30
2016-09-27Various updates to scipy and numpy (#1856)Adam J. Stewart2-4/+14
2016-09-27Update cdo to 1.7.2 (#1858)Michael Kuhn1-2/+2
2016-09-26Make PETSc build on Darwin (#1835)Erik Schnetter1-4/+7
Don't set cpp when building on Darwin.
2016-09-26Update OpenSSL (#1853)Erik Schnetter1-0/+1
2016-09-26some fixes to blas/lapack usage in packages (#1852)Denis Davydov12-43/+29
* atlas: fix unit test * openblas: remove symlinks; use lapack_libs.ld_flags in the test * mkl: fix openmp variant of blas/lapack libs * intel-parallel-studio: fix openmp variant of blas/lapack libs * netlib-scalapack: fix blas/lapack for multilib case (e.g. mkl) * arpack-ng: fix blas/lapack for multilib case (e.g. mkl) * petsc: explicitly specify blas/lapack * minor * cantera: fix blas/lapack usage * ipopt: fix blas/lapack usage * netlib-lapack: fix external blas usage * mfem: fix lapack/blas usage * superlu-mt: fix blas usage * flake8 fixes
2016-09-23Fix doc bugs, widen columns in the package listTodd Gamblin1-1/+1
2016-09-23a few package used in HEP including ROOT6Patrick Gartung10-0/+607
2016-09-23Remove duplicate ICU package (#1837)Adam J. Stewart6-62/+14
* Remove duplicate ICU package * Ignore deleted files during flake8 tests * Rename Boost ICU variant
2016-09-23m4: fix compilation on Sierra with GCC (#1844)Denis Davydov1-0/+6
* m4: fix compilation on Sierra with GCC * m4: check macOS version
2016-09-23Add Trilinos 12.8.1 (#1843)Bruno Turcksin1-0/+1
2016-09-23Don't require git for Julia @0.5: (#1834)Erik Schnetter1-1/+2
2016-09-23Update jemalloc to 4.2.1 (#1839)Erik Schnetter1-0/+2
2016-09-23Add libmesh, needed for some FEM applications (#1846)Robert D. French1-0/+42
2016-09-23hypre: fix a bug with blas/lapack names (#1841)Denis Davydov1-7/+2
2016-09-23Update OpenSSL (#1836)Erik Schnetter1-0/+2
This is a security update with priority "HIGH".
2016-09-22boost: fix a bug which broke it on macOS with clang+gfortran (#1816)Denis Davydov2-4/+19
* dealii: add missing python dependency * boost: fix a bug which broke it on macOS with clang+gfortran Boost was using gcc compiler instead of clang++, which lead to cryptic Undefined symbols linking errors for boost::python::objects::function_object() when building other packages against boost+python. * boost: add exceptions for intel * boost: use spack_cxx
2016-09-22Updates to CGAL and ICU4C packages (#1828)Adam J. Stewart2-26/+42
2016-09-22suitesparse: Added +fpic (for linking with shared libraries) (#1542)Elizabeth Fischer1-0/+3
2016-09-22New package "charm" for the Charm++ parallel programming framework (#1766)Erik Schnetter2-0/+191
2016-09-21Reworking of `lapack_shared_libs` and similar properties (#1682)Massimiliano Culpo27-206/+223
* Turned <provider>_libs into an iterable Modifications : - added class LibraryList + unit tests - added convenience functions `find_libraries` and `dedupe` - modifed non Intel blas/lapack providers - modified packages using blas_shared_libs and similar functions * atlas : added pthread variant * intel packages : added lapack_libs and blas_libs * find_library_path : removed unused function * PR review : fixed last issues * LibraryList : added test on __add__ return type * LibraryList : added __radd__ fixed unit tests fix : failing unit tests due to missing `self` * cp2k and dependecies : fixed blas-lapack related statements in package.py
2016-09-21Flake8 fixes.Todd Gamblin1-23/+23
2016-09-21Merge branch 'qt-osx' of git://github.com/mathstuf/spack into mathstuf-qt-osxTodd Gamblin7-12/+158
2016-09-21Add package for bedtools2 (#1572)George Hartzell1-0/+43
Add package for bedtools2, with support for v2.25.0 and v2.26.0.
2016-09-21Add package for bamtools (#1571)George Hartzell1-0/+45
bamtools provides a C++ API & command-line toolkit for working with BAM data.
2016-09-21Update espresso recipe to track change in spack internals (#1734)Mayeul d'Avezac1-1/+1
2016-09-21Add missing build dependencies to hdf package (#1812)Adam J. Stewart1-7/+7
2016-09-21Update to allow netlib-scalapack to build against netlib-lapack. (#1539)Kelly Thompson1-5/+7
2016-09-21Stop python from linking with system ncurses (#1672)Glenn Johnson2-0/+13
Python will look to link with libncursesw in preference to libncurses. Since ncurses in spack is built without suffixes there is no libncursesw and python will link to the system libncursesw for _curses.so and _curses_panel.so, as well as libpanelw for _curses_panel.so. This PR introduces a patch that simple removes the check for ncursesw in setup.py and therefore sets `curses_library` to `ncurses`.
2016-09-21Build pkg-config files for ncurses (#1673)Glenn Johnson1-1/+4
2016-09-21Rework libgd package (#1679)Glenn Johnson1-10/+25
* Added missing libtiff dependency * added dependency on fontconfig * Added version 2.2.3 * use autotools rather than cmake The cmake build was not producing a complete install. * There was no versioning of the installed libraries. * gdlib-config was missing * pkgconfig directory was missing These problems do not happen when built with autotools.
2016-09-21Merge branch 'efischer/160914-FixBinutils226Question' of ↵Todd Gamblin3-4/+5
git://github.com/citibeth/spack into bugfix/efischer-160914-FixBinutils226Question
2016-09-21Close #1683 Apply ADIOS 1.10.0 Patch (HDF5 1.10+) (#1699)Axel Huebl2-9/+42
* Close #1683 Apply ADIOS 1.10.0 Patch Also correct version dependencies and comments. * Clean Up ADIOS - add develop - simplify HDF5 options (parallel only) - remove optional netCDF (not fully v4)
2016-09-21cp2k : added dependencies (#1724)Massimiliano Culpo4-7/+157
* wannier90 : added package (#24) * wannier90 : added package * cp2k : added dependency on wannier90 * elpa : updated package, added cp2k dependency (#26) Conflicts: var/spack/repos/builtin/packages/elpa/package.py
2016-09-21Set JAVA_HOME on module load and on dependent installs. (#1716)Alfredo Adolfo Gimenez1-0/+6
* Set JAVA_HOME on module load and on dependent installs. * Include environment setup from dependencies in dependee module (#1714)
2016-09-21grackle : added package (#1725)Massimiliano Culpo2-0/+160
Modifications : * grackle : added package * grackle : added version 2.2
2016-09-21Wrap yt package (#1751)Erik Schnetter1-0/+78
yt is a python package for analyzing and visualizing volumetric, multi-resolution data from astrophysical simulations, radio telescopes, and a burgeoning interdisciplinary community.
2016-09-21Qt library: added variant to enable/disable compilation of examples (#1763)Sergey Kosukhin1-1/+7
2016-09-20Compiling python with gnu c++ on macos fails with toolboxglue enabled.Patrick Gartung1-0/+2
2016-09-20added STAT release 3.0.0Gregory L. Lee1-2/+2
2016-09-20Julia: Add version 0.5.0 (#1809)Erik Schnetter1-2/+3
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