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Ref: https://github.com/dealii/dealii/issues/7934
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Fixes #11226
MySQL 5.7.X and Boost 1.59.0 have a closer relationship than
MySQL >= 8.0 and their corresponding Boost versions: 5.7.X needs to
link against boost libraries which is indicated by marking boost as
a link dependency (removing the 'type' reverts to the default, which
includes link and build).
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Starting with version 7.64.0, curl skips cookies specified with "-H"
(generic custom header specification) when following redirects, which
causes the "accept-license"-cookie for jdk to disappear. The result
is that jdk fails to download. This uses the "-b" option (which is
used specifically for configuring cookies) instead, which is more
permissive.
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spec['dep'].libs.ld_flags can return system paths in some cases.
This is a targeted fix for the petsc package when retrieving
suite-sparse dependency libraries.
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* added latest versions + malloc variant
* added a variant to activate different instrumentations
* added a variant to activate or not networking
* added a variant to activate or not cuda and tools
* enforce c++ standard and make it consistent with boost
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* cflags and cxxflags from packages.yaml need to be passed into QMCPACK's CMake explictly for now.
* You need the ifcore library from the Intel compler to be manually linked in when you linked against a LAPACK provider that is not MKL.
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tarball posted 2019-04-15
https://www.open-mpi.org/software/ompi/v3.0/
dantopa@cn209:openmpi-3.0.4-5ienfvwpcxky3nz5jt3rygxzxzltkwm4 $ cd lib/
dantopa@cn209:lib $ ls -alh
total 27M
...
lrwxrwxrwx 1 dantopa dantopa 16 Apr 17 10:01 libmpi.so -> libmpi.so.40.0.5
confirmation builds Darwin (LANL):
x86_64
-- linux-centos7-x86_64 / gcc@4.8.5 -----------------------------
5ienfvw openmpi@3.0.4%gcc
bkkhvej ^hwloc@1.11.11%gcc
5chyfxo ^libpciaccess@0.13.5%gcc
bcnjbc3 ^libxml2@2.9.8%gcc
tt2hkol ^numactl@2.0.12%gcc
64vg6e4 ^zlib@1.2.11%gcc
ARM
-- linux-rhel7-aarch64 / gcc@4.8.5 ------------------------------
cq2y6b3 openmpi@3.0.4%gcc
7gqvelc ^hwloc@1.11.11%gcc
6a4he35 ^libpciaccess@0.13.5%gcc
6a5uzd6 ^libxml2@2.9.8%gcc
m5neuus ^numactl@2.0.12%gcc
67s2oqn ^zlib@1.2.11%gcc
Power9
-- linux-rhel7-ppc64le / gcc@4.8.5 ------------------------------
otirvfn openmpi@3.0.4%gcc
r6cylpu ^hwloc@1.11.11%gcc
uzm3xdv ^libpciaccess@0.13.5%gcc
trik6hj ^libxml2@2.9.8%gcc
pmgndwh ^numactl@2.0.12%gcc
4v3ticy ^zlib@1.2.11%gcc
2019-04-18
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
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pumi
slepc
plasma
magma
trilinos
alquimia
pflotran
strumpack
tasmanian
amrex
hypre
omega-h
superlu-dist
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* Update spec format to simpler syntax, maintain backwards compatibility
* Switch to new spec.format method throughout internals
* update package files for new format strings
* documentation and minor code cleanup. removed nonsensical variant sigils
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* Initial commit for v2.0 of the CEED software suite.
* Update Nek packages and gslib
* Help spack concretize the hypre version for ceed-2.0.
* Fix nekcem install error
* Add support for gfortran v8 in nek5000 and nekcem.
* Split Nek5000 into Nek5000 and Nektools
* Get Nektools to build fine in Theta
* Fix travis failure: remove unused 'import numbers' from nek5000.
* Check for gfortran if it is wrapped
* Tweak the detection of gfortran in nek5000.
* Fix Nek packages to add -std=legacy when FC=gcc
* spack install ceed~petsc works fine on Theta
* Fix flake8 errors
* Fix more flake8 tests
* Fix an import issue
* Tweak the suite-sparse package to avoid interaction with existing system
installations of suite-sparse.
* petsc: update superlu-dist dependency
* Updates in the packages: occa, libceed, and ceed.
* In the libceed package, explicitly tell nvcc which host compiler to use.
* Fix python formatting.
* Simplify the test for gfortran in nek* packages.
* ceed: 2.0 uses petsc@3.11.0
* hpgmg-0.4; use from ceed@2.0.0
* Update the hypre dependency for ceed 2.0.
* Disable the superlu-dist dependency (through hypre) when using a
+quickbuild of ceed 2.0.
* petsc-3.11.0: add xlf fix
* nekcem: has a build dependency on Python 2.7+
* hpgmg: better setting of compiler options and use python for configure
* libceed: use v0.4 tag
* libceed: fix 0.4 release oops (pkgconfig version)
* Add a patch for magma-2.5.0 that brings it up the current 'master'.
* In the mfem package, install the examples, miniapps, and data under
$prefix/share/mfem.
* In the magma package, apply a patch to v2.5.0 that disables
magma_sparse - for testing purposes.
* In the magma package, link the 'magma' library with the
'nvToolsExt' library.
* In the magma package, update the 'magma-2.5.0.patch' with the latest
commits from the magma source repository. Also, remove the library
'nvToolsExt' from the 'magma-2.5.0-cmake.patch' - now it is not
needed.
* In the magma package, disable OpenMP when using v2.5.0 with the
IBM XL compiler.
Please enter the commit message for your changes. Lines starting
* In the mfem package, add version for the 'laghos-v2.0' tag; also,
prefix the versions `laghos-v*` with their respective development
version numbers -- this way they are properly ordered within spack
relative to the official numbered versions.
* petsc: add version 3.11.1 (#11179)
(cherry picked from commit 1eab6e3c865836d209db4621d0cd44bc8663656b)
* ceed-2.0: use petsc-3.11.1
* this-is-so-dumb.f -> empty.f
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* mpifileutils v0.9.1
* mpifileutils v0.9.1 for realz
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- Add 3.2.1
- Reformat versions to include proper upstream version tags
- Add gtk dependency
- Add prefix to PATH so sublime_text can be found
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If specifying ~openssl, the post-install step will still try to install
the non-existent certificate, leading to an IOError.
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Ref: https://github.com/spack/spack/issues/11202
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* Added openmpi 3.1.4
* fix suffix comment
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* Add versions 1.4.0, 1.3.0, and 1.2.0
* Add dependencies and update constraints (e.g. version 1.4.0 of
precice requires a later version of boost)
* Add maintainers
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A Spack hack for MKL usage was needed in QMCPACK prior to version 3.5
when non-Intel compilers were used. This Spack hack could have
undesirable side-effects and led to ugly code that was extra work to
maintain. For older versions of QMCPACK, we throw a conflict if you
want to use Intel MKL with the other compilers commonly found on x86.
Note that there is no impact to version of QMCPACK since 3.5.
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explicitly specified (#11187)
Version 6 added dependency on LAPACK - so additional -DTPL_LAPACK_LIBRARIES option is required
Ref: https://github.com/xiaoyeli/superlu_dist/issues/36
Ref: https://github.com/spack/spack/issues/10173
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Similar to #10956 flex needs to be a link-dependency for verilator in
order for FlexLexer.h to be found during install.
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Also added maintainers
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* Limit to FASTMath-only packages
* Replace boxlib with amrex
As requested by @asalmgren
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This commit edits the Makefile to use github.com mirrors rather than the
default mirrors of the dependency packages installed by GO.
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