summaryrefslogtreecommitdiff
path: root/var
AgeCommit message (Collapse)AuthorFilesLines
2018-07-11beast1: new version (#8691)Levi Baber1-0/+2
2018-07-11mothur: new version (#8692)Levi Baber1-0/+1
2018-07-11py-ply: added version 3.11 (#8383)Massimiliano Culpo1-2/+3
2018-07-11Don't propagate version-specific URL overrides to newer versions (#8565)Massimiliano Culpo1-0/+34
When a user specifies a URL for a specific version of a package, Spack originally would use that URL for all newer versions of the package. This behavior has proven to be generally more harmful than useful, so this PR removes the feature such that a version-specific URL override affects only that version.
2018-07-11py-cutadapt: needs py-setuptools at runtime (#8689)Levi Baber1-1/+1
2018-07-11openmpi: add 3.1.1 (#8684)Howard Pritchard1-0/+1
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2018-07-11Adjusted sublime-text package (#8685)Jannek Squar1-2/+3
2018-07-11perl-math-cephes: new package (#8671)Levi Baber1-0/+35
2018-07-11Update kaldi (#8682)Jimmy Tang1-8/+8
* Update kaldi always use the --fst-version otherwise it does the wrong thing with selecting the fst version. also enable speex by default * Give version a more meaningful name * Update older version with a date string instead
2018-07-11New packages: libbeato bwtool. (#8681)健美猞猁2-0/+72
2018-07-11Retire the py-dev package (#8679)Adam J. Stewart2-48/+0
2018-07-11Patch for 'netlib-lapack'. (#8677)Sergey Kosukhin2-0/+31
2018-07-11Bump gromacs versions. (#8676)健美猞猁1-0/+2
2018-07-10Adding psm as a dependency of mvapich2. (#8674)Jon Rood1-1/+5
2018-07-10Gtkorvo updates (#8663)Kshitij Mehta5-9/+57
* gtkorvo-atl: Updated to version 2.2 * gtkorvo-dill: Updated to version 2.4 * gtkorvo-enet: Updated to version 1.3.14 * libevpath: Updated to version 4.4.0 * libffs: Updated to version 1.5 * gtkorvo-atl: Bugfix: Fixed cmake args * gtkorvo-enet: Switched order of versions to have the latest version on the top * gtkorvo-atl: Cleaned up cmake_args. Added conditional self.run_tests * gtkorvo-dill: Cleaned up cmake_args. Added conditional self.run_tests * libffs: Correction in dependency versions. Cleaned up cmake_args. Added conditional self.run_tests * libevpath: Correction in dependency versions. Cleaned up cmake_args. Added conditional self.run_tests * gtkorvo-atl: Removed unused option from cmake args
2018-07-10libxshmfence: Update to 1.3 (#8667)Michael Kuhn1-2/+3
libxshmfence@1.2 does not compile with recent versions of glibc.
2018-07-09charm: add possibility to run tests (#8665)Matthias Diener1-0/+6
2018-07-09libnova: new package (#8666)Levi Baber1-0/+42
* libnova: new package * libnova: flake8
2018-07-09Make 'netlib-lapack' a CMakePackage. (#8661)Sergey Kosukhin1-48/+70
* Make 'netlib-lapack' a CMakePackage. * Add a comment. * Some refactoring.
2018-07-09express: bamtools lib handling (#8552)Levi Baber1-5/+2
* express: bamtools lib handling * express: use libs property * express: remove old comment
2018-07-08trilinos: update dtk dependencies (#8660)Andrey Prokopenko1-0/+3
2018-07-07blasr: new package (#8367)Miles Perry1-0/+96
* blasr: new package * blasr: changed version release, created list with 9 things, seperated make into build phase. * blasr: fixed build phase by adding : * blasr: fixed syntax for configure_args * blasr: flake8 edits * blasr-libcpp: fixed configure_args syntax * blasr: fixed install issues resulting from PacBio changes * blasr: removed accidental blasr-libcpp upload * blasr: removed accidental blasr-libcpp upload * blasr: removed blasr-libcpp * blasr: edited out comment
2018-07-07ECP VELOC (#8581)Elsa Gonsiorowski, PhD7-0/+388
* kvtree package file * MPI is default on * proper mpi compiler * rankstr package * better rankstr description * typo * redset package * shuffile package * er package * axl package * proper pythor * mpi is default on * alpha releases and master versions * veloc package with boost headers dep * cmake version * added C++11 requirement * flake8 * flake8 * ecp tag * axl: better async api option handling * veloc package description * prettier args list * C++11 flag handler * v1.0 of veloc
2018-07-06Added support for uncrustify 0.67. (#8655)estebanpauli1-1/+17
* Added support for uncrustify 0.67. Since the build system changed for uncrustify at version 0.64, I had to change the package from an AutotoolsPackage to a plain Package and use @when annotations to build the packages differently. * Removed blank line at end of file * Added support for python2.6 in uncrustify configuration.
2018-07-06Fix security issue in singularity + misc cleanups (#8657)George Hartzell1-9/+15
- Versions before 2.5.2 suffer from a serious security problem (https://nvd.nist.gov/vuln/detail/CVE-2018-12021). Deleted all versions prior to v2.5.2. - Update homepage (looks like singularity's going Freemium). - Use release tarball instead of automagically generated archive tarball (digest values are more stable). - No longer need autotools for released versions, just @devel. - Install needs to be single-threaded, otherwise when installed as root the various 'chmod' operations race against the copies.
2018-07-06Fix digests for git@2.17.0 and git@2.17.1 (#8652)George Hartzell1-4/+4
The entries for git@2.17.1 and git@2.17.0 were swapped. This fixes them.
2018-07-06Update nettle package with info for v3.4 (#8653)George Hartzell1-0/+1
2018-07-06Add url_for_version and list_url to Ruby package (#8216)Adam J. Stewart1-0/+6
2018-07-06precice: new package (issue #8643) (#8644)Mark Olesen2-0/+181
preCICE (Precise Code Interaction Coupling Environment) is a coupling library for partitioned multi-physics simulations. Partitioned means that preCICE couples existing programs (solvers) capable of simulating a subpart of the complete physics involved in a simulation. of-precice: new package preCICE adapter for OpenFOAM
2018-07-06switch git to kernel.org source and sha256 (#8580)Andreas Baumbach1-48/+49
* switch git to kernel.org source and sha256 Change-Id: I5fe15689adb1163e9ed2b7127b52c95bd0d48564 * fix forgotton md5s Change-Id: Ib01f21e20678d9aac3344b6ee311134a90b87bdd * remove old url Change-Id: I717a084a0357a84b83bc6c8542749aac7e04f68b
2018-07-06Glog: make is a function (#8648)Adam J. Stewart1-2/+2
2018-07-05cleverleaf: Intel compiler fails compilation without c++11 flag (#8550) (#8598)twang151-0/+6
2018-07-05Add missing dependencies and variants to wcslib (#8603)Adam J. Stewart1-2/+34
* Add missing dependencies and variants to wcslib * Add flex version requirement
2018-07-05ncbitoolkit: Create new package. (#8591)lingnanyuan1-0/+65
* ncbitoolkit: Create new package. * Fix Flake8 Error. * Add version constraints and change format. * Fix version constraints.
2018-07-05added rpy2 2.9.4 and added py-jinja2 dependency (#8645)Gregory Lee1-3/+14
2018-07-04gcc: Fix build of older versions with recent versions of glibc (#8510)Michael Kuhn6-0/+455
2018-07-04Parquet: new packages (#8601)Matthias Wolf6-0/+184
* parquet: new package Includes the following dependencies: * arrow * flatbuffers Changes for compilation: * snappy * thrift * zstd * parquet: improve recipes (including dependencies) * arrow: remove unused import in recipe * parquet: fix line length for flake8/py27 * parquet, arrow: fix py26 format strings * Address review comments. * arrow: simplify recipe
2018-07-03disable openblas intel openmp patch for versions > 0.2.20, fixed upstream ↵becker331-1/+1
(#8638)
2018-07-03Add new versions for log4cplus. (#8621)健美猞猁1-1/+3
* Add new versions for log4cplus. * Update log4cplus versions. * Add urls. * Add url_for_version. * Remove url_for_version.
2018-07-03Bump sbt to 1.1.6. (#8634)健美猞猁1-2/+1
2018-07-02Fix base class for py-pyserial (#8633)Adam J. Stewart1-1/+1
2018-07-02Pxz: new package (#8631)Matthias Diener1-0/+43
2018-07-02screen: update package (#8630)Matthias Diener1-0/+1
2018-07-02petsc: add in latest release 3.9.3. (#8627)Satish Balay2-62/+1
xl related fixes are 3.9.3 so remove xlc-test-3.9.0.diff
2018-07-02byobu: update package (#8628)Matthias Diener1-0/+1
2018-07-02Bump gradle to 4.8.1. (#8625)健美猞猁1-0/+1
2018-07-02Add Amrvis package (#8590)Jon Rood1-0/+188
* First draft of amrvis package file. * More additions to amrvis. * Formatting. * Forcing compiler environment variables to point to spack mpi compilers when using mpi. * Disabling intel compiler for amrvis. * Comments. * Refining amrvis package file. * Moving library and include locations variables to be inserted at the first lines of the makefile. * Globbing amrvis binary instead of constructing its name. * Making env variable setting consistent and fixing globbing of executable. * Using iglob instead of glob. * Turning MPI on by default for Amrvis.
2018-07-02ENH: Building OpenFOAM sub-packages (issue #8579) (#8592)Mark Olesen4-55/+156
* ENH: Building OpenFOAM sub-packages (issue #8579) * Some support for packages building with OpenFOAM - Adjust the wrappers calling the OpenFOAM Allwmake script. Have them look for a Allwmake-spack file first, which is assumed to contain special adjustments for compiling with spack. This file could be delivered as part of a tarball (which is unlikely) or generated on the fly by the spack sub-package as part of its patch or configure stage. CONFIG: change the default paraview variant for openfoam to be False - the different combinations of paraview backends, off-screen etc make it difficult to suggest that building with paraview as a standard dependency makes much sense. Additionally, building paraview with qt can become quite an issue. So it makes much more sense to only enable that upon request. ENH: add a +vtk variant. - for VTK with off-screen rendering to be used by the runTimePostProcessing function object, which is a fairly simple framework for generating images of some OpenFOAM derived objects (eg, sampling planes). SPACK spec problem: - reflect the flex restriction impose by the scotch dependency within the openfoam spec as well, as partial workaround for buggy or annoying spec resolution. OTHER: - updated the backstop foamEtcFile file to include args handling as per the OpenFOAM-v1806 updates. * new version: OpenFOAM-v1806 - https://www.openfoam.com/releases/openfoam-v1806/
2018-07-02A new package: xhmm. (#8620)健美猞猁1-0/+51
* A new package: xhmm. * Flake8. * Support general BLAS.
2018-06-29Add Python 3.7.0 (#8619)Adam J. Stewart1-0/+1