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2020-10-20boost: fix building old versions with non-system glib and bzip2 (#19389)ketsubouchi2-0/+35
2020-10-20krims: disable float80 when non x86_64. (#19388)Toyohisa Kameyama2-0/+19
2020-10-20MRCPP: added new versions up to v1.3.5 (#19257)Roberto Di Remigio1-5/+16
Removed all alpha versions too
2020-10-20py-pyqt4: Require older version of PySIP (#19391)Seth R. Johnson1-1/+1
Fixes #19322, thanks sto @Sinan81.
2020-10-19add updated version of py-dnaio (#19374)Glenn Johnson1-1/+4
* add updated version of py-dnaio * Add py-setuptools-scm build dependency * Fine tune the py-xopen dependency constraint The needed version of xopen does not become specific until v0.4 of dnaio. * Set constraint on py-setuptools-scm The py-setuptools-scm dependency is needed beginning with v0.4.
2020-10-19updated version of py-cutadapt (#19373)Glenn Johnson1-4/+14
* updated version of py-cutadapt * Update dependency specs * Add py-setuptools-scm build dependency * More constraint fixes * Fix version range for py-xopen
2020-10-19Add new package: botan (#19362)Martin Aumüller1-0/+50
2020-10-19gdbm patch (#19380)Sajid Ali2-1/+2
* gdbm patching * compiler name fix * rename patch
2020-10-19external find for cpio (#19379)Sajid Ali1-0/+9
* external find for cpio * address reviewer comments
2020-10-19Added tau version 2.29.1 hash (#19329)wspear1-1/+2
* Added tau version 2.29.1 hash * Update var/spack/repos/builtin/packages/tau/package.py Make version name match branch name (master) Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19add updated version of py-xopen (#19375)Glenn Johnson1-2/+5
* add updated version of py-xopen * Update dependency constraints * Further refine the python constraints Also, put them all together. * Put python constraints at top of list
2020-10-19netcdf-fortran: support for Cray compiler (#18971)Sergey Kosukhin1-0/+36
2020-10-19New package - pulseaudio (#19378)Glenn Johnson4-0/+153
This PR adds the pulseaudio package and the speexdsp package as a dependency. In addition, this PR adds a `libs` property to the libtool package.
2020-10-19New package - Gate (#19377)Glenn Johnson5-0/+556
* New package - Gate This PR adds the Gate package as well as the ITK dependency. * Fix flake 8 errors * Be more explicit with CMake options Make sure Cmake values related to variants are explicitly set to either ON/OFF. The ITK_USE_MKL flag will turn on the following: - USE_FFTWD=ON - USE_FFTWF=ON - USE_SYSTEM_FFTW=ON Since the package depends on fftw-api, those options will always be set.
2020-10-19add updated version of trimgalore (#19376)Glenn Johnson1-0/+1
2020-10-19Add updated version of fastqc (#19372)Glenn Johnson1-0/+1
2020-10-19util-linux: Add version 2.33.1 (#19370)Dr. Christian Tacke1-0/+1
2020-10-19Added thrust@1.8.3 (#19368)Robert Pavel1-0/+1
Added version 1.8.3 to thrust
2020-10-19Remove version in extends (#19366)Sebastian Schmitt5-5/+9
extends expects the package name only. Cf. #12480.
2020-10-19A collection of tensorflow fixes and updates (#19371)Andrew W Elble6-8/+93
* A collection of tensorflow fixes and updates * tensorflow 2.3.1 requires the workaround for external protobuf as well * Update tensorflow-estimator to 2.3.0 * Update tensorboard to 2.3.0 * Update tensorboard-plugin-wit to use actual releases * Patch that potentially fixes #16073 * add myself to maintainer list
2020-10-19Slate package: resolves missing header issue (#19032)G-Ragghianti1-27/+29
* Changed make command to support new slate build variable 'blas=' * Updated to use package's "make install" target * Added variant 'blas' to support switching blas provider and removed legacy 'mkl' variant. * Fixed problem caused by systems which use a non-bash /bin/sh * Removed blas= variant in preference for setting blas provider via spec syntax (e.g., ^openblas). * Fixed formating * Changed to MakefilePackage and cleaned up make argument generation * Implemented "edit" method * Removed blank line * Sqitched to using mpi compiler wrapper variables * Update var/spack/repos/builtin/packages/slate/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19r-rgeos: fix build error (#19360)darmac1-1/+1
2020-10-19openssh: new version 8.4p1 (#19358)Amjad Kotobi1-0/+1
2020-10-19anaconda3: new versions (#19357)Amjad Kotobi1-0/+2
2020-10-19Add new package: py-mido (#19355)darmac1-0/+21
2020-10-19Add new package: py-cekit (#18813)darmac1-0/+30
* Add new package: py-cekit * refine dependencies
2020-10-19Add new package: tpm2-tss (#18824)darmac1-0/+43
* Add new package: tpm2-tss * remove patch(), there's no need to use it
2020-10-19Add new package: percona-server (#18818)darmac1-0/+29
2020-10-19py-coapthon3: added new package at v1.0.1 (#18990)darmac1-0/+21
* Add new package: py-coapthon3 * remove mistake version
2020-10-19premake-core: added new package at v5.0.0-alpha15 (#18807)darmac1-0/+27
2020-10-19wsmancli: added new package at v2.6.0 (#18906)darmac1-0/+27
2020-10-19junit4: added new package at v4.13 (#18769)darmac1-0/+19
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-18butterflypack: Support fj Fortran (#17514)ketsubouchi4-0/+1137
* butterflypack: Support fj Fortran * butterflypack: split patch * butteflypack: add ieee_support_nan
2020-10-18nag: added external detection capabilities (#18153)Massimiliano Culpo1-2/+61
2020-10-18mpich: Add `external find` support (#18330)Robert Blake1-0/+106
* Adding external support to mpich * Removing debugging print statement.
2020-10-18remove package: libglvnd (#18363)Omar Padron1-44/+0
2020-10-18Add new package: vvtest (#18701)Miranda Mundt1-0/+29
* Adding vvtest to spack * Fixing flake8 failures * Adding suggestions * Removing unnecessary import * Incorporating suggested changes
2020-10-18Add new package: soci (#18816)darmac1-0/+17
2020-10-18AMD ROCm rccl - numa.h issue fix (#19317)arjun-raj-kuppala3-1/+36
2020-10-18Dataviz sdk update dep variants (#19327)Chuck Atkins2-31/+18
* ecp-io-sdk: Add preferred variants to all dependencies * ecp-viz-sdk: Add preferred variants to all dependencies
2020-10-18Revert "ipopt: Add condition for 'aarch64' to Ipopt/config.guess (#13499)" ↵Massimiliano Culpo2-13/+0
(#19341) This reverts commit e7f574aad5e89be222fbee0dff72f685f87f165c.
2020-10-18Add new package: e2fsprogs (#18763)darmac1-0/+22
* Add new package: e2fsprogs * refine setup_run_environment()
2020-10-18vdt: Removed the -mfpu=neon option for aarch64. (#18134)t-nojiri2-0/+13
2020-10-18coevp: use libquadmath only x86_64 and ppcle. (#18130)t-nojiri1-0/+7
2020-10-18dmtcp: Fix for aarch64 (#19246)t-nojiri2-0/+322
2020-10-18bash: add ssh flag (#18992)Adam J. Stewart1-0/+3
* bash: add flag on macOS * Add flag unconditionally
2020-10-18py-scipy: added v1.5.3 (#19353)Adam J. Stewart1-14/+15
2020-10-17Update libensemble to v0.7.1 (#19349)Stephen Hudson1-2/+4
* Update libensemble to v0.7.1 * Update var/spack/repos/builtin/packages/py-libensemble/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-17Removing classic flang. (#19350)Nichols A. Romero4-523/+0
2020-10-17helics: Add version 2.6.1 (#19348)Ryan Mast1-0/+1
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