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2023-09-06g2: add dependencies, build options, and v3.4.6 release (#39717)Edward Hartnett1-5/+23
* adding bacio to g2 dependencies * edited documentation * added version 3.4.6 * starting with 3.4.6, can use any version of jasper * adding w3emc dependency for versions up to 3.4.5 * removed t-brown as maintainer at his request
2023-09-06Add cmdlime package (#39835)Matheus Henrique1-0/+16
* Add cmdlime package * remove the blank line at the end of file
2023-09-05cabana: fix gtest dependency (#39811)Sam Reeve1-1/+1
2023-09-05new package: Yade (#39786)leonardo araujo1-0/+46
* feat: yade package * fix: dependencies for Yade * feat: yade versions * fix: cmake_args and version_url * fix: Spack license identifier * fix: black formatter * fix: black would be reformatted? yes! * feat: add maintainer --------- Co-authored-by: leo magdanello <araujo.leonardo@luizalabs.com>
2023-09-05umpire: Add 2022.10.0 (#37998)Mikael Simberg2-0/+23
* Add umpire 2022.10.0 * Add patches to umpire@2022.10.0 * Add axom 0.8.0 and 0.8.1 * Remove Umpire 2023.06.0
2023-09-05xerces-c: support variant cxxstd=20 (#39784)Wouter Deconinck1-1/+1
2023-09-05podio, edm4hep and lcio: add lib and lib64 to LD_LIBRARY_PATH (#37881)Juan Miguel Carceller2-1/+3
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-09-05boost: support variant cxxstd=20 (#39769)Wouter Deconinck1-0/+1
2023-09-05hpx-kokkos: add 0.4.0 and other minor changes (#39723)Mikael Simberg1-1/+39
* Add hpx-kokkos 0.4.0 * Make git global package property in hpx-kokkos instead of having it version-specific * Add variant for choosing future type in hpx-kokkos * Add support for testing hpx-kokkos
2023-09-05Add maintainers to some bioconductor packages (#39801)pabloaledo5-0/+5
Signed-off-by: Pablo <pablo.aledo@seqera.io>
2023-09-05clhep: support variant cxxstd=20 (#39768)Wouter Deconinck1-3/+6
2023-09-04glibc: add package (#39695)Harmen Stoppels9-0/+385
2023-09-02py-dataclasses-json: add new package (#39493)Jen Herting1-0/+20
* [py-dataclasses-json] New package * [py-dataclasses-json] limiting py-poetry-core versions
2023-09-02[py-preshed] added version 3.0.8 (#38969)Jen Herting1-0/+2
* [py-preshed] added version 3.0.8 * [py-preshed] reordered for consistancy
2023-08-31py-pandas: add v2.1.0 (#39707)Adam J. Stewart1-47/+52
2023-08-31[NVHPC] add a possibility to control default CUDA version (#38909)Anton Kozhevnikov1-0/+5
* add a possibility to control default cuda version * fix stype * style fix * resolve comment * resolve comment * Fix style in nvhpc package.py --------- Co-authored-by: antonk <antonk@cscs.ch> Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>
2023-08-31dla-future: add v0.2.0 (#39705)Raffaele Solcà1-7/+47
2023-08-30llvm: fix for Flang variant due to exception handling (#36171)Pat McCormick1-1/+10
* The flang project does not support exceptions enabled in the core llvm library (and developer guidelines explicitly state they should not be used). For this reason, when the flang variant is selected, LLVM_ENABLE_EH needs to be disabled. In the current main branch of llvm (and thus future releases), enabling flang and setting LLVM_ENABLE_EH will cause the overall build to fail. * Update var/spack/repos/builtin/packages/llvm/package.py Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> * fix syntax --------- Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2023-08-30py-llvmlite: add Python version requirements (#39711)Adam J. Stewart1-16/+15
2023-08-30[procps] New versions (#38650)Chris Green4-2/+70
* [procps] New versions 3.3.14, 3.3.3.15..3.3.17, 4.0.0..4.0.3 * Put upper bound on patch application * [Patch was merged](https://gitlab.com/procps-ng/procps/-/merge_requests/189) for upcoming 4.0.4.
2023-08-29py-parsl: add v2023.08.21 (#39642)Ryan Marcellino1-8/+19
* py-parsl: add v2023.08.21 * fix style * add missing deps
2023-08-29amg2023 package: cmake build (#39618)Dewi1-56/+24
Switch from makefile to CMake-based build. CMake support is currently in a specific branch of the amg2023 repo, so add this branch as a version in the package.
2023-08-29Upgrading py-pika versions (#39670)Loïc Pottier1-2/+13
* Upgraded py-pika versions Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * Upgraded py-pika versions Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * added variants and adding setuptools constraint Signed-off-by: Loïc Pottier <pottier1@llnl.gov> * missing setuptools for older versions Signed-off-by: Loïc Pottier <pottier1@llnl.gov> --------- Signed-off-by: Loïc Pottier <pottier1@llnl.gov>
2023-08-29libpng: add libs property (#39638)Adam J. Stewart1-0/+7
2023-08-29boxlib: Add BL_USE_PARTICLES cmake var (#39660)Tom Payerle1-0/+1
Set BL_USE_PARTICLES to 1, which should case boxlib build to include Particles classes according to CMakeLists.txt. This seems to fix #18172 The aforementioned error seems to occur in cmake phase while processing CMakeLists.txt in Src/C_ParticleLib, and appears to be due to the variable containing the list of src files for the add_library() call being empty unless BL_USE_PARTICLES is set to 1.
2023-08-29Added release 2023.08.25 (#39665)G-Ragghianti3-0/+11
2023-08-29[mathematica] added version 13.0.1 (#39675)Jen Herting1-0/+5
2023-08-29Jedwards/parallelio262 (#39676)Jim Edwards1-2/+3
* add parallelio@2.6.2 * add comments
2023-08-29justbuild: add v1.2.1 (#39679)Alberto Sartori1-1/+6
2023-08-29[py-tiktoken] added verison 0.3.1 (#39677)Jen Herting1-0/+1
2023-08-29py-torchmetrics: add v1.1.1 (#39685)Adam J. Stewart1-0/+1
2023-08-29mapl: Fix pflogger dependency (#39683)Matthew Thompson1-3/+3
2023-08-29[py-gradio] New package (#39304)Jen Herting1-0/+46
* [py-gradio] New package * [py-gradio] added deps from requirements.txt * [py-gradio] py-pillow -> pil
2023-08-29py-lightly: add v1.4.17 (#39686)Adam J. Stewart1-0/+1
2023-08-29py-distributed: use py-jinja2 versions from 2.10.3 (#39658)LydDeb1-1/+1
In depends_on py-jinja2, use versions from 2.10.3, instead of strict equality, according to the pyproject.toml of py-distributed 2023.4.1
2023-08-29Automated git version fixes (#39637)Harmen Stoppels148-586/+1273
Use full length commit sha instead of short prefixes, to improve reproducibility (future clashes) and guard against compromised repos and man in the middle attacks. Abbreviated commit shas are expanded to full length, to guard against future clashes on short hash. It also guards against compromised repos and man in the middle attacks, where attackers can easily fabricate a malicious commit with a shasum prefix collision. Versions with just tags now also get a commit sha, which can later be used to check for retagged commits.
2023-08-29fmt: 10.1.1 (#39664)Harmen Stoppels1-0/+1
2023-08-28Patch VTK to enable python 3.8 in VTK 8.2 (#38735)kwryankrattiger9-9/+363
* VTK: Add patch for python 3.8 support * CI: Re-enable VisIt in CI * Configure spec matrix for stack with VisIt * Add pugixml dep for 8.2.0 * Make VTK and ParaView consistent on proj dep * OpenMPI 3: provides MP support by default * Add details on proj dep in ParaView * Add python 3.8 to test mock repo * Patches to get VisIt VTK interface * CI: Disable VisIt with GUI in DAV
2023-08-28singularityce: arg handling fix (#39663)Brian Vanderwende1-2/+2
2023-08-28kokkos: avoid setting multiple `cuda_arch` (#38723)Loris Ercole1-5/+21
The kokkos package does not support building with cuda with multiple `cuda_arch`. An error is raised if multiple `cuda_arch` are specified.
2023-08-28mapl: add 2.40, deprecate old versions (#39615)Matthew Thompson1-21/+74
* Add MAPL 2.40, deprecated old versions * Undo some variant changes * style fixes * Make variants reflect Cmake options * Remove pnetcdf variant * Clean up depends_on
2023-08-28octopus: specify the scalapack library not the directory (#39109)Ashwin Kumar Karnad1-2/+2
* octopus: specify the scalapack library not the directory * octopus: use spec.scalapack.libs.ld_flags
2023-08-28GnuPG: add v2.4.3 (#39654)Massimiliano Culpo3-0/+3
Also updates a few dependencies
2023-08-28Fix a few issues with git versions / moving targets in packages (#39635)Harmen Stoppels8-7/+12
2023-08-28py-scikit-optimize: add v0.9.0 and move gptune patch (#38738)Jen Herting3-7/+9
Co-authored-by: liuyangzhuan <liuyangzhuan@gmail.com>
2023-08-28libarchive: use openssl by default (#39640)Harmen Stoppels1-1/+1
2023-08-28magma: add v2.7.2 (#39645)Stan Tomov1-0/+1
2023-08-28libarchive: new versions (#39646)Harmen Stoppels1-0/+2
2023-08-28libuv: add versions up to v1.46.0 (#39647)Harmen Stoppels1-0/+5
2023-08-27py-igraph: new package with version 0.10.6 (#39179)Christopher Christofi2-1/+64