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2020-08-12mpich, mvapich2: fixed setup_*_environment (#18032)Massimiliano Culpo2-4/+8
fixes #18028 Since now external packages support multiple modules the correct thing to do is to check if the name of the *first* module to be loaded contains the string "cray"
2020-08-12Make the build stage of OpenSSL parallel (#18024)Harmen Stoppels1-4/+4
2020-08-12libpciaccess: New version 0.16 (#18035)Erik Schnetter1-0/+1
2020-08-12cmake: Add version 3.16.3 (#18034)Erik Schnetter1-0/+1
`cmake @3.16.3` is the version provided by Ubuntu 20.04. Adding this version here avoids the warning ``` ==> Warning: Missing a source id for cmake@3.16.3 ``` when using the system `cmake`.
2020-08-12Spack recipes for ROCm software components-Phase1 (#17422)srekolam26-0/+1027
* Spack recipes for ROCm Stage 1 Build components * fix flake8 errors * fixes for flake8 errors * Add a patch for cmake 3.x suport * Fix rpath issue where hsa-rocr-dev does not allow it to be filled in by spack * Remove inherited cmake args from comgr * Make hsakmt-roct compile: no -Werror because with const cast in numa, and actually add the numa dependency * Remove redundant cmake args which is inherited * Fix some dependencies * Fix some python 2.x compatibilities * Add amd gpu targets to rocfft * Make comgr a link dep of rocm-dbgapi and remove redundant cmake args * Remove redundant cmake args * Remove more redundant cmake args * Final redundant args * Use cmake 3.x instead of a fixed version * Remove random variable * Use installed rocclr instead of nonexisting directory * Don't build outside the staging folder * Deploy some missing cmake target file * Formatting * Fix target list * Properly handle the rocclr dependency * Formatting * Fix vermin test * Make all 3.5.0 package depend exactly on eachother * Add a few missing link dependencies * Fix flake8 * Remove some other redundant flags * Add gcc install prefix for gcc builds of llvm-amdgpu * review changes for the spack recipes * Do not hard-code versions * Fix atmi install - no more relative rpaths outside of install directory (required patch) - fix build -> link dependencies - remove unused build dependency * Fix flake8 errors * Remove unused variable and make things python 2.x compatible * Fix flake8 * Move compiler config from rocfft -> hipcc * Remove redundant dependency on fftw-api * Remove redundant import * Avoid hitting the ROCM_PATH variable altogether with a patch; also just fill in all variables * Add missing deps z3, zlib and ncurses+termlib to llvm-amdgpu * Fix perl shebang and add dep * Fix typo and patch HIP_CLANG_ROOT detection in hip's cmake files * fixing build failure due z3 and adding zlib for rocgdb * new changes to add z3,curses dependency for llvm-amdgpu * fix flake8 error Co-authored-by: root <root@localhost.localdomain> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2020-08-12petsc: add explicit build dependency: diffutils (#17979)eugeneswalker1-0/+2
2020-08-12Update FleCSPH package (#17997)Julien Loiseau1-9/+18
* Update FleCSPH package * Flake8 corrections * Update FleCSI version
2020-08-12Adding externals support for CUDA. (#18011)Robert Blake1-0/+10
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-08-12Use configure-release instead of configure for UCX (#17941)Jon Rood1-2/+4
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-12librsb: added v1.2.0.9 (#18015)Michele Martone1-1/+2
2020-08-12weechat: added new package at v2.9 (#17996)Andrew W Elble1-0/+53
2020-08-12ParaView: added v5.8.1 (#17995)Ethan Stam1-0/+1
2020-08-12Bugfix for #17999: use cudart instead of cuda. (#18000)Robert Blake1-1/+1
This is needed because libcuda is used by the driver, whereas libcudart is used by the runtime. CMake searches for cudart instead of cuda. On LLNL LC systems, libcuda is only found in compat and stubs directories, meaning that the lookup of libraries fails.
2020-08-12podio: added dependency on jinja2 for newer versions (#17990)Thomas Madlener1-0/+1
2020-08-11Adding external recognition to perl (#17756)Robert Blake1-0/+37
* Perl now has external recognition. * Changing code to use the new external packages API.
2020-08-11Libtool: add spack external find support (#16691)Adam J. Stewart1-1/+10
* Libtool: add spack external find support * Less specific regex * match -> search * Clarify that min returns first alphabetically, not shortest * Simplify version determination
2020-08-11elpa: add cuda support, add libtool dep, fix parallel build failure (#17969)Harmen Stoppels1-3/+20
2020-08-11py-pyinstrument: added v3.1.3 (#17976)Adam J. Stewart1-1/+2
2020-08-11py-sphinx: added v3.2.0 (#17977)Adam J. Stewart1-2/+3
2020-08-11py-sphinx-rtd-theme: added v0.5.0 (#17978)Adam J. Stewart1-4/+8
2020-08-11libcroco: added build dependency on pkg-config (#17970)darmac1-0/+1
2020-08-11openssl: added detection capabilities (#16653)Sajid Ali1-0/+9
2020-08-11sprng: added new package (#17570)Kurt Sansom1-0/+132
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-10UCX: add version 1.8.1 (#17972)Howard Pritchard1-0/+1
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
2020-08-10Add fenicsx packages (#17743)Jeffrey Salmond6-0/+193
* add py-ufl package from fenics * add py-fiat package from fenics * add py-ffcx package from fenics * add py-dijitso package from fenics * add dolfinx library from fenics * amend ffcx to use ufl and fiat master branches * setup variants complex and int64 of dolfinx * add dolfinx python library as package * add test dependencies to py-dolfinx * remove broken doc variant * remove test dependencies from py-dolfinx * flake8 fixes to dolfinx and py-dolfinx * make sure dolfinx cmake picks up the correct python version * list build phases in py-dolfinx package * remove unnecessary package url * make pkgconf a build dependency * make all python dependencies build+run * py-ffcx needs py-setuptools to be a build/run dependency to support ffcx executable * remove unnecessary variants from dolfinx * add missing dependencies to py-dijitso * remove stray line from py-dolfinx * simplify definition of build_directory in py-dolfinx Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * use depends_on("python") rather than extends("python") in py-ffcx Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * use depends_on("python") rather than extends("python") in py-fiat Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * use depends_on("python") rather than extends("python") in py-ufl Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * rename py-fiat to py-fenics-fiat * rename py-ufl to py-fenics-ufl * fix error in depends_on(petsc) definition * add missing dep on numpy to py-fenics-fiat * specify python@3.8: as requirement for all fenics components * use tuples rather than list for depends_on type= * specify eigen@3.3.7: as dependency for dolfinx * add js947 and chrisrichardson as maintainers for the fenics packages * remove scipy dependency from py-dolfinx * rename package py-ffcx -> py-fenics-ffcx * rename package dolfinx -> fenics-dolfinx * rename package py-dolfinx -> py-fenics-dolfinx * remove pointless URL from py-fenics-dolfinx package * rename package py-dijitso -> py-fenics-dijitso * formatting * remove unecessary cmake args from fenics-dolfinx * revert py-fenics-fiat python version to 3: Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * revert py-fenics-ufl python version to 3.5: Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * add conflict to fenics-dolfinx for C++17 support * revert py-fenics-ffcx python version to 3.5: Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-10Updated docstring description for MVAPICH2 (#17921)Nithin Senthil Kumar1-1/+6
* Updated docstring description for MVAPICH2 * Fixed flake8 character count warning and added maintainers * Removed trailing whitespaces Co-authored-by: nithintsk <nithintsk@github.com>
2020-08-10aperture-photometry: add v2.8.4 (#17953)darmac1-0/+1
2020-08-10Add new package: tiptop (#17907)darmac2-0/+34
* Add new package: tiptop * fix flake8 error * tiptop: remove sha256 value
2020-08-10pbbam: fix build error (#17955)darmac1-2/+3
* pbbam: fix build error * Update var/spack/repos/builtin/packages/pbbam/package.py Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-10kibana: support aarch64 (#17910)darmac1-1/+1
* kibana: support aarch64 * kibana: change jdk to java
2020-08-10fix apex sha256 and depends constraint (#17902)darmac1-2/+2
2020-08-10Removed references to BlueGene/Q in Spack builtin packagesMassimiliano Culpo16-95/+4
2020-08-10petsc: update hypre dependency wrt 2.18.2 -> 2.19.0 API change (#17973)Satish Balay1-2/+4
2020-08-10Simplify the detection protocol for packagesMassimiliano Culpo3-45/+118
Packages can implement “detect_version” to support detection of external instances of a package. This is generally easier than implementing “determine_spec_details”. The API for determine_version is similar: for example you can return “None” to indicate that an executable is not an instance of a package. Users may implement a “determine_variants” method for a package. When doing external detection, executables are grouped by version and each group results in a single invocation of “determine_variants” for the associated spec. The method returns a string specifying the variants for the package. The method may additionally return a dictionary representing extra attributes for the package. These will be stored in the spec yaml and can be retrieved from self.spec.extra_attributes The Spack GCC package has been updated with an implementation of “determine_variants” which adds the following extra attributes to the package: c, cxx, fortran
2020-08-10Update packages.yaml format and support configuration updatesMassimiliano Culpo3-8/+9
The YAML config for paths and modules of external packages has changed: the new format allows a single spec to load multiple modules. Spack will automatically convert from the old format when reading the configs (the updates do not add new essential properties, so this change in Spack is backwards-compatible). With this update, Spack cannot modify existing configs/environments without updating them (e.g. “spack config add” will fail if the configuration is in a format that predates this PR). The user is prompted to do this explicitly and commands are provided. All config scopes can be updated at once. Each environment must be updated one at a time.
2020-08-10git: new version 2.28 (#17848)Amjad Kotobi1-0/+5
* git: new version 2.28 * git: man page version 2.28
2020-08-10DiHydrogen: adding blas and associated variants (#17911)Brian Van Essen1-3/+29
2020-08-09Add new package: libhugetlbfs (#17904)darmac1-0/+19
2020-08-09LLVM minor cleanup (#17905)Nichols A. Romero1-4/+0
* Since LLVM already depends on the CUDA build system, these lines are redundant. * This conflict doesn't do anything.
2020-08-09libtirpc: fix krb5 depends and remove --disable-gssapi configure (#17926)darmac1-3/+2
2020-08-09Add new package: hazelcast (#17928)darmac1-0/+29
2020-08-09FFTW: "configure" script failed with Intel compilers on some systems. (#17936)Rémi Lacroix2-0/+55
Next version of FFTW won't use `-no-gcc` so add a patch to backport the fix to older versions. Fixes #17810.
2020-08-09blaspp: added explicit dependency on CUDA (#17965)Teodor Nikolov1-1/+11
2020-08-09add variant `tests` which can be one of (none, tests, benchmarks) (#17949)eugeneswalker1-1/+6
2020-08-09libxscrnsaver: fix depends scrnsaverproto error (#17951)darmac1-1/+1
2020-08-09blaze: fix build error (#17954)darmac1-0/+1
2020-08-09KNEM and XPMEM support for UCX (#17215)Alex Margolin2-40/+39
* KNEM url updated Signed-off-by: Alex Margolin <alex.margolin@huawei.com> * Allow UCX to be built against KNEM and XPMEM Signed-off-by: Alex Margolin <alex.margolin@huawei.com>
2020-08-09dire: new package at v2.004 (#17749)Wouter Deconinck1-0/+39
Older versions do not compile correctly. New users should use 2.004, not any of the older versions. Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-08-09py-scikit-learn: added v0.23.2 (#17876)Adam J. Stewart1-1/+2
2020-08-09charliecloud: added v0.17 (#17855)Jordan Ogas1-2/+16