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2020-05-20r-spatstat: New package (#16729)Amjad Kotobi1-0/+32
* r-spatstat: New package * r-spatstat: version dependency added
2020-05-20Install gaussian using their scripts (#16723)Antonio Arena1-34/+42
* Create VMD recipe This is a new recipe to install VMD on Spack-managed hosts. * Fix lint errors. * Use plain Package As per peer-review: - Use Package to build - Use configure to create a Makefile - Use install to copy files to prefix directory * Move VMD package to correct path, duh... * Restructure description so first short paragraph can be used by module files. * Add an empty line as suggested by peer-review. That's how you separate paragraphs. * Remove extra spaces. * Use setup_build_environment since that's where you're supposed to export OS variblaes. Thanks to peer-review for spotting this. * Create VMD recipe This is a new recipe to install VMD on Spack-managed hosts. * Fix lint errors. * Use plain Package As per peer-review: - Use Package to build - Use configure to create a Makefile - Use install to copy files to prefix directory * Move VMD package to correct path, duh... * Add Cubist (#16069) * Add Cubist * enhance recipe * Not using OS module anymore * remove white space * Fix build shell * make Flake8 happy * use bash shell for build * Convert it To MakefilePackage as per peer-review * dbcsr: expose all options, check openblas feats (#16034) * dbcsr: expose all options, check openblas feats * dbcsr: use Ninja to build, ensure serialized tests * dbcsr: add myself as maintainer * MPark.Variant: GCC 7.3.1 Conflict (#16081) * MPark.Variant: GCC 7.3.1 Conflict Due to an ICE in this specific patch-release of GCC, compile errors in downstream packages should be avoided with a clean conflict. * Fix superfluous spaces Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com> * Fix typo Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> * Move VMD package to correct path, duh... * Add an empty line as suggested by peer-review. That's how you separate paragraphs. * New matlab versions (#16086) * Add new version 1.1.1 (#16087) * New package bonniepp added (#16091) * openbabel: fix compilation errors (#16090) - Disable maeparser as it is broken with CMake - Added missing dependencies * singularity: updated maintainer list (#16093) * New version xrootd-4.11.3 (#16092) * I added Gaussian 16. I also execute bsd/install to fix scripts instead of filtering them. * revert VMD so only Gaussian is in my PR. * revert VMD so only Gaussian is in my PR. * revert VMD so only Gaussian is in my PR. * I added myself as a package maintainer. Co-authored-by: asmaahassan90 <31959389+asmaahassan90@users.noreply.github.com> Co-authored-by: Tiziano Müller <tiziano.mueller@chem.uzh.ch> Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja> Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com> Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com> Co-authored-by: Amjad Kotobi <amjadkotbi@gmail.com> Co-authored-by: athanasio <athanasio@users.noreply.github.com> Co-authored-by: Carlos Arango Gutierrez <arangogutierrez@gmail.com>
2020-05-20mxnet: Fix dependency and add new version. (#16714)Toyohisa Kameyama2-7/+59
* mxnet: Fix dependency and add new version. 1. Fix opencv and numpy dependency. 2. Add version 1.6.0. * typo in patch is fixed. fixed spec access.
2020-05-20add SST packages and dependencies (#16618)Jeremy14-56/+713
2020-05-19py-scikit-learn: add latest version (#16731)Adam J. Stewart1-1/+2
2020-05-19mantevo: update urls to new website (#16732)Christoph Junghans9-9/+9
2020-05-19py-tensorflow-estimator: new version 2.2.0 (#16726)Andrew W Elble1-3/+5
2020-05-19Add new Acts release (#16718)Hadrien G1-0/+1
2020-05-19Introduce version 1.0.0 for py-xenv and remove unreleased development ↵Thomas Madlener2-5/+3
release (#16722) Problems in 0.0.4 should be fixed for 1.0.0
2020-05-19update URL and sha256 for aws-parallelcluster 2.7.0 (#16717)ddeidda1-1/+2
Signed-off-by: ddeidda <ddeidda@amazon.com>
2020-05-19openssl: Be Explicit About perl Usage (#16721)Dr. Christian Tacke1-0/+3
The openssl build process can use the wrong perl for various reasons, including: * Wrong value in PERL env var * The build process first looks for `perl5`, which the spack system does not provide, but some other distributions provide it. That way, the build process can end up using the wrong perl. Stop all of these problems by explicitly setting PERL to the to be used dependency.
2020-05-19Add new package: http-post (#16678)darmac1-0/+35
* Add new package: http-post * refine version name
2020-05-19Add new package: http-ping (#16675)darmac1-0/+34
* Add new package: http-ping * refine version name
2020-05-18[podio] fix root cxxstd dependency (#16708)vvolkl1-11/+6
2020-05-18Add new package: http-load (#16676)darmac1-0/+33
* Add new package: http-load * refine version format * fix date/version error
2020-05-18Add new package: http-get (#16677)darmac1-0/+35
* Add new package: http-get * refine version name
2020-05-18TensorFlow: add new versions (#16703)Adam J. Stewart1-0/+3
2020-05-18r-decipher: new package at 2.12.0 (#16705)Justin S1-0/+27
2020-05-18angsd: add 0.933, add misc programs to install (#16669)Justin S1-1/+17
* angsd: add 0.933, add misc programs to install * angsd: add r variant
2020-05-18paraview: use kits by default (#16698)Utkarsh Ayachit1-0/+13
Adding a variant to enable/disable kits and making the default use kits.
2020-05-18r-tensor: New package (#16697)Amjad Kotobi1-0/+20
2020-05-18r-goftest: New package (#16699)Amjad Kotobi1-0/+20
2020-05-18Update Apache arrow to 0.17.1 (#16701)Nick Robison1-0/+2
Update Arrow to the latest version. Also add an additional dependency on `thrift` when building with Parquet support.
2020-05-18Add new package: hyperscan (#16681)darmac1-0/+31
* Add new package: hyperscan * hyperscan: remove cmake_args()
2020-05-18New package: py-pyeda (#16416)archxlith1-0/+18
* New package: py-pyeda * py-pyeda: added dep for python 3.3 or greater * [py-pyeda] Added space in depends_on python line
2020-05-18PyYAML: fix linking to libyaml (#16682)Adam J. Stewart1-0/+32
2020-05-18revocap-refiner: fixed typo in pic flags (#16694)h-denpo1-1/+1
2020-05-17hwloc: Add libudev variant. (#16615)Toyohisa Kameyama1-0/+7
* hwloc: Add libudev variant. * typo fix. * Wrong version for libudev variant is fixed. * Add maintainers.
2020-05-17Add new version of COSMA: 2.2.0 (#16672)Marko Kabic1-13/+10
* Updated versions of COSMA. * Added an empty line for formatting. * Switched to sha256. * Renamed gpu variant to cuda. Extending the CudaPackage base class.
2020-05-17r-spatstat-data: New package (#16688)Amjad Kotobi1-0/+21
2020-05-17r-rms: New package (#16683)Amjad Kotobi1-0/+48
* r-rms: New package * r-rms: deleted duplicated dependency * r-rms: deleting comma
2020-05-17r-spatialpack : New package (#16664)Amjad Kotobi1-0/+19
* r-spatialpack : New package * r-spatialpack : R dependeny added type * r-spatialpack: Description was missing
2020-05-16py-scipy: Fix build with gcc@10: (#16687)Michael Kuhn1-0/+5
2020-05-16py-fastcluster: new package at 1.1.26 (#16588)Justin S1-0/+18
* py-fastcluster: new package at 1.1.26 * py-fastcluster: add py-setuptools dep
2020-05-16r-yaimpute: New package (#16658)Amjad Kotobi1-0/+20
2020-05-16r-envstats: New package (#16659)Amjad Kotobi1-0/+26
2020-05-16New package frontistr (#16660)h-denpo1-0/+33
"""Open-Source Large-Scale Parallel FEM Program for Nonlinear Structural Analysis"""
2020-05-16r-spatstat-utils : New package (#16663)Amjad Kotobi1-0/+21
2020-05-16hpctoolkit: add dependency on gotcha (#16670)Mark W. Krentel1-0/+2
2020-05-16Add Go versions 1.14.3 and 1.13.11 (#16673)Paul1-0/+2
2020-05-16Add new package: hiredis (#16679)darmac1-0/+21
2020-05-16Add new package: guacamole-server (#16680)darmac1-0/+26
2020-05-16r-polspline: new package (#16648)Amjad Kotobi1-0/+22
* r-polspline: new package * r-polspline: updated urls
2020-05-15fix catalyst so that it doesn't depend on a particular spelling of python ↵Omar Padron1-1/+7
(#16667)
2020-05-15py-petsc4py: allow ~mpi variant (#16595)Stephen Hudson1-13/+16
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-15likwid: fix build with gcc@10: (#16641)Michael Kuhn1-0/+6
2020-05-15binutils: fix build with gcc@10: (#16661)Michael Kuhn1-0/+3
The issue seems to be fixed in the development version already.
2020-05-14Pipelines: Support DAG scheduling and dynamic child pipelinesScott Wittenburg1-0/+3
This change also adds a code path through the spack ci pipelines infrastructure which supports PR testing on the Spack repository. Gitlab pipelines run as a result of a PR (either creation or pushing to a PR branch) will only verify that the packages in the environment build without error. When the PR branch is merged to develop, another pipeline will run which results in the generated binaries getting pushed to the binary mirror.
2020-05-14namd: build on aarch64. (#16639)Toyohisa Kameyama1-2/+3
2020-05-14Fixing the build directory for cardioid. (#16640)Robert Blake1-16/+0
* Fixing the build directory for cardioid. * These imports are no longer needed due to deletions. Co-authored-by: Robert Blake <rob.c.blake.3@gmail.com>