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2016-07-15Merge pull request #1254 from mdevlin1/features/hmmerbecker331-0/+76
add HMMER package
2016-07-15add HMMER packageMitchell Devlin1-0/+76
2016-07-15Merge pull request #378 from mathstuf/dep-typesTodd Gamblin203-314/+535
dependency types
2016-07-14Fix package name bug.Todd Gamblin1-1/+1
2016-07-14added py-pydatalog packageGregory Becker1-0/+38
2016-07-14Add GNU Prolog package.Todd Gamblin1-0/+41
2016-07-14foam-extend, sundials: add cmake as a builddepBen Boeckel2-0/+2
The sundials doesn't use CMake directly, but it is referenced in the patch step. I suspect it calls CMake somewhere else in its build system.
2016-07-14cantera: use nolink for python module dependenciesBen Boeckel1-4/+4
Unsure about this, but this is probably true.
2016-07-14lua: bring in run deps of build and run depsBen Boeckel1-1/+1
2016-07-14R: look only at run dependencies of build and run depsBen Boeckel1-1/+1
2016-07-14python: setup the dependent environment properlyBen Boeckel1-1/+1
We want the run dependencies of all build and run dependencies of the current package.
2016-07-14msgpack-c: add missing dependency on cmakeBen Boeckel1-0/+2
2016-07-14py-matplotlib: require py-setuptools to buildBen Boeckel1-0/+1
2016-07-14deptypes: mark deptypes in packagesBen Boeckel183-305/+329
2016-07-14spack: introduce dependency typesBen Boeckel14-1/+191
deptypes: allow for different queries For things like Python modules, they are required for the build and runtime, but rather than adding a new parameter for what to query across the dependency DAG, just expose the recursive query parameter.
2016-07-14darwin: explicitly use the 'when=' kwargBen Boeckel3-3/+3
2016-07-14doxygen: add missing importBen Boeckel1-0/+2
2016-07-13Flake8Adam J. Stewart1-19/+19
2016-07-13Filter both makefiles to allow intel to build bzip2Adam J. Stewart1-3/+8
2016-07-12Merge pull request #1223 from glennpj/tidyrTodd Gamblin1-0/+49
New package - r-tidyr
2016-07-12Merge pull request #1222 from glennpj/libxml2Todd Gamblin1-4/+0
Use the site_packages_dir from the Python class
2016-07-11New package - r-tidyrGlenn Johnson1-0/+49
Tools for changing the layout of data sets.
2016-07-11Remove import of osGlenn Johnson1-1/+0
The import of `os` is no longer needed.
2016-07-11Use the site_packages_dir from the Python classGlenn Johnson1-3/+0
It is not necessary to set site_packages_dir in this package as it is already provided by the Python package class.
2016-07-11Merge pull request #1207 from davydden/pkg/dealii_update_petsc37Todd Gamblin1-93/+107
dealii: update for petsc37
2016-07-11Fix flake8 errorGlenn Johnson1-2/+2
2016-07-11Fix error reported on Google Groups listGlenn Johnson1-2/+6
Fixes the reported `TypeError: not enough arguments for format string` error.
2016-07-11Merge pull request #1218 from glennpj/dplyrTodd Gamblin4-0/+182
New package - r-dplyr
2016-07-11New package - r-lubridateGlenn Johnson1-0/+47
Functions to work with date-times and timespans.
2016-07-11New package - r-dplyrGlenn Johnson4-0/+182
This brings in dplyr and dependencies.
2016-07-11Merge pull request #1214 from glennpj/rfilterTodd Gamblin1-0/+24
Filter compilers for R
2016-07-11Filter compilers for RGlenn Johnson1-0/+24
This adds a filter_compilers function to have the Makeconf file for R point to the actual compilers rather than the spack wrappers. Also added version 3.3.1.
2016-07-11Merge pull request #1206 from davydden/pkg/slepc_371_fixTodd Gamblin2-5/+42
slepc: fix install_name for binaries on macOS for 3.7.1
2016-07-11Fix typo in Octave variant suitesparsePaul Hopkins1-1/+1
2016-07-11dealii: fix directory structureDenis Davydov1-0/+10
2016-07-11dealii: flake8 fixesDenis Davydov1-2/+4
2016-07-11dealii: run tests only when self.run_tests=trueDenis Davydov1-87/+88
2016-07-11dealii: add petsc/slepc 3.7 supportDenis Davydov1-6/+7
2016-07-11slepc: fix install_name for binaries on macOS for 3.7.1Denis Davydov2-5/+42
2016-07-09Merge pull request #1169 from ↵Todd Gamblin1-14/+16
davydden/feature/install_argument_tests_petsc_fixes --run-tests install argument and petsc fixes
2016-07-09petsc: add -lm when building exampleDenis Davydov1-1/+1
2016-07-08Update Cereal to 1.2.0Erik Schnetter1-0/+1
2016-07-08Merge pull request #1192 from SteVwonder/developTodd Gamblin1-7/+7
docbook-xml: replace 'cp -t' with install_tree
2016-07-08Merge pull request #1194 from SteVwonder/lua-fixTodd Gamblin1-2/+2
lua: switch self.version[:2] to .up_to(2)
2016-07-08json-c: fix build by running seriallyStephen Herbein1-1/+2
2016-07-07lua: switch self.version[:2] to .up_to(2)Stephen Herbein1-2/+2
Previous package would not install correctly, would throw: return os.path.join('share', 'lua', '%d.%d' % self.version[:2]) TypeError: %d format: a number is required, not Version
2016-07-07docbook-xml: replace 'cp -t' with install_treeStephen Herbein1-7/+7
'-t' is not supported by the default cp on Mac OS X replace with install/install_tree cannot just use install_tree since shutil.copytree insists that the dst directory not exist
2016-07-06Merge pull request #1175 from davydden/pkg/arpack-3.4.0Todd Gamblin3-17/+93
Pkg/arpack 3.4.0
2016-07-06Merge pull request #1174 from LLNL/bugfix/github-1172-suite-sparseTodd Gamblin1-18/+23
Bugfix/GitHub 1172 suite sparse
2016-07-06Merge pull request #1180 from davydden/pkg/oce_update_and_fixTodd Gamblin1-19/+14
oce: add 0.17.2; fix running tests
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